data_3VC4
#
_model_server_result.job_id            HDSKxjGfw2QdCVy6QwtNNQ 
_model_server_result.datetime_utc      '2024-11-05 19:47:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vc4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    3VC4 
#
_exptl.entry_id    3VC4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3VC4 
_cell.length_a            98.496 
_cell.length_b            98.496 
_cell.length_c            81.025 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VC4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 198 n y 
N1 C5 IMD sing 199 n y 
N1 HN1 IMD sing 200 n n 
C2 N3 IMD doub 201 n y 
C2 H2 IMD sing 202 n n 
N3 C4 IMD sing 203 n y 
N3 HN3 IMD sing 204 n n 
C4 C5 IMD doub 205 n y 
C4 H4 IMD sing 206 n n 
C5 H5 IMD sing 207 n n 
#
_atom_sites.entry_id                     3VC4 
_atom_sites.fract_transf_matrix[1][1]    0.010153 
_atom_sites.fract_transf_matrix[1][2]    0.005862 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011723 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012342 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IMD A 1 1001 1001 IMD IMD . 
C 3 0FS A 1 1 1 0FS LIG . 
D 2 IMD A 1 327 1 IMD IMD . 
E 4 HOH A 1 2 2 HOH HOH . 
E 4 HOH A 2 3 3 HOH HOH . 
E 4 HOH A 3 4 4 HOH HOH . 
E 4 HOH A 4 5 5 HOH HOH . 
E 4 HOH A 5 6 6 HOH HOH . 
E 4 HOH A 6 7 7 HOH HOH . 
E 4 HOH A 7 8 8 HOH HOH . 
E 4 HOH A 8 9 9 HOH HOH . 
E 4 HOH A 9 10 10 HOH HOH . 
E 4 HOH A 10 11 11 HOH HOH . 
E 4 HOH A 11 12 12 HOH HOH . 
E 4 HOH A 12 13 13 HOH HOH . 
E 4 HOH A 13 14 14 HOH HOH . 
E 4 HOH A 14 15 15 HOH HOH . 
E 4 HOH A 15 16 16 HOH HOH . 
E 4 HOH A 16 17 17 HOH HOH . 
E 4 HOH A 17 18 18 HOH HOH . 
E 4 HOH A 18 19 19 HOH HOH . 
E 4 HOH A 19 20 20 HOH HOH . 
E 4 HOH A 20 21 21 HOH HOH . 
E 4 HOH A 21 22 22 HOH HOH . 
E 4 HOH A 22 23 23 HOH HOH . 
E 4 HOH A 23 24 24 HOH HOH . 
E 4 HOH A 24 25 25 HOH HOH . 
E 4 HOH A 25 26 26 HOH HOH . 
E 4 HOH A 26 27 27 HOH HOH . 
E 4 HOH A 27 328 1 HOH HOH . 
E 4 HOH A 28 329 28 HOH HOH . 
E 4 HOH A 29 330 29 HOH HOH . 
E 4 HOH A 30 331 30 HOH HOH . 
E 4 HOH A 31 332 31 HOH HOH . 
E 4 HOH A 32 333 32 HOH HOH . 
E 4 HOH A 33 334 33 HOH HOH . 
E 4 HOH A 34 335 34 HOH HOH . 
E 4 HOH A 35 336 35 HOH HOH . 
E 4 HOH A 36 337 36 HOH HOH . 
E 4 HOH A 37 338 37 HOH HOH . 
E 4 HOH A 38 339 38 HOH HOH . 
E 4 HOH A 39 340 39 HOH HOH . 
E 4 HOH A 40 341 40 HOH HOH . 
E 4 HOH A 41 342 41 HOH HOH . 
E 4 HOH A 42 343 42 HOH HOH . 
E 4 HOH A 43 344 43 HOH HOH . 
E 4 HOH A 44 345 44 HOH HOH . 
E 4 HOH A 45 346 45 HOH HOH . 
E 4 HOH A 46 347 46 HOH HOH . 
E 4 HOH A 47 348 47 HOH HOH . 
E 4 HOH A 48 349 48 HOH HOH . 
E 4 HOH A 49 350 49 HOH HOH . 
E 4 HOH A 50 351 50 HOH HOH . 
E 4 HOH A 51 352 51 HOH HOH . 
E 4 HOH A 52 353 52 HOH HOH . 
E 4 HOH A 53 354 53 HOH HOH . 
E 4 HOH A 54 355 54 HOH HOH . 
E 4 HOH A 55 356 55 HOH HOH . 
E 4 HOH A 56 357 56 HOH HOH . 
E 4 HOH A 57 358 57 HOH HOH . 
E 4 HOH A 58 359 58 HOH HOH . 
E 4 HOH A 59 360 59 HOH HOH . 
E 4 HOH A 60 361 60 HOH HOH . 
E 4 HOH A 61 362 61 HOH HOH . 
E 4 HOH A 62 363 62 HOH HOH . 
E 4 HOH A 63 364 63 HOH HOH . 
E 4 HOH A 64 365 64 HOH HOH . 
E 4 HOH A 65 366 65 HOH HOH . 
E 4 HOH A 66 367 66 HOH HOH . 
E 4 HOH A 67 368 67 HOH HOH . 
E 4 HOH A 68 369 68 HOH HOH . 
E 4 HOH A 69 370 69 HOH HOH . 
E 4 HOH A 70 371 70 HOH HOH . 
E 4 HOH A 71 372 71 HOH HOH . 
E 4 HOH A 72 373 72 HOH HOH . 
E 4 HOH A 73 374 73 HOH HOH . 
E 4 HOH A 74 375 74 HOH HOH . 
E 4 HOH A 75 376 75 HOH HOH . 
E 4 HOH A 76 377 76 HOH HOH . 
E 4 HOH A 77 378 77 HOH HOH . 
E 4 HOH A 78 379 78 HOH HOH . 
E 4 HOH A 79 380 79 HOH HOH . 
E 4 HOH A 80 381 80 HOH HOH . 
E 4 HOH A 81 382 81 HOH HOH . 
E 4 HOH A 82 383 82 HOH HOH . 
E 4 HOH A 83 384 83 HOH HOH . 
E 4 HOH A 84 385 84 HOH HOH . 
E 4 HOH A 85 386 85 HOH HOH . 
E 4 HOH A 86 387 86 HOH HOH . 
E 4 HOH A 87 388 87 HOH HOH . 
E 4 HOH A 88 389 88 HOH HOH . 
E 4 HOH A 89 390 89 HOH HOH . 
E 4 HOH A 90 391 90 HOH HOH . 
E 4 HOH A 91 392 91 HOH HOH . 
E 4 HOH A 92 393 92 HOH HOH . 
E 4 HOH A 93 394 93 HOH HOH . 
E 4 HOH A 94 395 94 HOH HOH . 
E 4 HOH A 95 396 95 HOH HOH . 
E 4 HOH A 96 397 96 HOH HOH . 
E 4 HOH A 97 398 97 HOH HOH . 
E 4 HOH A 98 399 98 HOH HOH . 
E 4 HOH A 99 400 99 HOH HOH . 
E 4 HOH A 100 401 100 HOH HOH . 
E 4 HOH A 101 402 101 HOH HOH . 
E 4 HOH A 102 403 102 HOH HOH . 
E 4 HOH A 103 404 103 HOH HOH . 
E 4 HOH A 104 405 104 HOH HOH . 
E 4 HOH A 105 406 105 HOH HOH . 
E 4 HOH A 106 407 106 HOH HOH . 
E 4 HOH A 107 408 107 HOH HOH . 
E 4 HOH A 108 409 108 HOH HOH . 
E 4 HOH A 109 410 109 HOH HOH . 
E 4 HOH A 110 411 110 HOH HOH . 
E 4 HOH A 111 412 111 HOH HOH . 
E 4 HOH A 112 413 112 HOH HOH . 
E 4 HOH A 113 414 113 HOH HOH . 
E 4 HOH A 114 415 114 HOH HOH . 
E 4 HOH A 115 416 115 HOH HOH . 
E 4 HOH A 116 417 116 HOH HOH . 
E 4 HOH A 117 418 117 HOH HOH . 
E 4 HOH A 118 419 118 HOH HOH . 
E 4 HOH A 119 420 119 HOH HOH . 
E 4 HOH A 120 421 120 HOH HOH . 
E 4 HOH A 121 422 121 HOH HOH . 
E 4 HOH A 122 423 122 HOH HOH . 
E 4 HOH A 123 424 123 HOH HOH . 
E 4 HOH A 124 425 124 HOH HOH . 
E 4 HOH A 125 426 125 HOH HOH . 
E 4 HOH A 126 427 126 HOH HOH . 
E 4 HOH A 127 428 127 HOH HOH . 
E 4 HOH A 128 429 128 HOH HOH . 
E 4 HOH A 129 430 129 HOH HOH . 
E 4 HOH A 130 431 130 HOH HOH . 
E 4 HOH A 131 432 131 HOH HOH . 
E 4 HOH A 132 433 132 HOH HOH . 
E 4 HOH A 133 434 133 HOH HOH . 
E 4 HOH A 134 435 134 HOH HOH . 
E 4 HOH A 135 436 135 HOH HOH . 
E 4 HOH A 136 437 136 HOH HOH . 
E 4 HOH A 137 438 137 HOH HOH . 
E 4 HOH A 138 439 138 HOH HOH . 
E 4 HOH A 139 440 139 HOH HOH . 
E 4 HOH A 140 441 140 HOH HOH . 
E 4 HOH A 141 442 141 HOH HOH . 
E 4 HOH A 142 443 142 HOH HOH . 
E 4 HOH A 143 444 143 HOH HOH . 
E 4 HOH A 144 445 144 HOH HOH . 
E 4 HOH A 145 446 145 HOH HOH . 
E 4 HOH A 146 447 146 HOH HOH . 
E 4 HOH A 147 448 147 HOH HOH . 
E 4 HOH A 148 449 148 HOH HOH . 
E 4 HOH A 149 450 149 HOH HOH . 
E 4 HOH A 150 451 150 HOH HOH . 
E 4 HOH A 151 452 151 HOH HOH . 
E 4 HOH A 152 453 152 HOH HOH . 
E 4 HOH A 153 454 153 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . B 2 41.701 -13.307 -12.493 1 49.07 ? N1 IMD 1001 A 1 
HETATM 2 C C2 IMD . . . B 2 42.646 -12.404 -12.854 1 47.73 ? C2 IMD 1001 A 1 
HETATM 3 N N3 IMD . . . B 2 42.706 -12.361 -14.206 1 47.97 ? N3 IMD 1001 A 1 
HETATM 4 C C4 IMD . . . B 2 41.798 -13.239 -14.718 1 49.22 ? C4 IMD 1001 A 1 
HETATM 5 C C5 IMD . . . B 2 41.164 -13.833 -13.628 1 48.73 ? C5 IMD 1001 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           489 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           5 
#