data_3VC4 # _model_server_result.job_id ZzGWQOMXWmld4pc4OQNaAw _model_server_result.datetime_utc '2024-11-05 19:37:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":327}' # _entry.id 3VC4 # _exptl.entry_id 3VC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VC4 _cell.length_a 98.496 _cell.length_b 98.496 _cell.length_c 81.025 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 198 n y N1 C5 IMD sing 199 n y N1 HN1 IMD sing 200 n n C2 N3 IMD doub 201 n y C2 H2 IMD sing 202 n n N3 C4 IMD sing 203 n y N3 HN3 IMD sing 204 n n C4 C5 IMD doub 205 n y C4 H4 IMD sing 206 n n C5 H5 IMD sing 207 n n # _atom_sites.entry_id 3VC4 _atom_sites.fract_transf_matrix[1][1] 0.010153 _atom_sites.fract_transf_matrix[1][2] 0.005862 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 1001 1001 IMD IMD . C 3 0FS A 1 1 1 0FS LIG . D 2 IMD A 1 327 1 IMD IMD . E 4 HOH A 1 2 2 HOH HOH . E 4 HOH A 2 3 3 HOH HOH . E 4 HOH A 3 4 4 HOH HOH . E 4 HOH A 4 5 5 HOH HOH . E 4 HOH A 5 6 6 HOH HOH . E 4 HOH A 6 7 7 HOH HOH . E 4 HOH A 7 8 8 HOH HOH . E 4 HOH A 8 9 9 HOH HOH . E 4 HOH A 9 10 10 HOH HOH . E 4 HOH A 10 11 11 HOH HOH . E 4 HOH A 11 12 12 HOH HOH . E 4 HOH A 12 13 13 HOH HOH . E 4 HOH A 13 14 14 HOH HOH . E 4 HOH A 14 15 15 HOH HOH . E 4 HOH A 15 16 16 HOH HOH . E 4 HOH A 16 17 17 HOH HOH . E 4 HOH A 17 18 18 HOH HOH . E 4 HOH A 18 19 19 HOH HOH . E 4 HOH A 19 20 20 HOH HOH . E 4 HOH A 20 21 21 HOH HOH . E 4 HOH A 21 22 22 HOH HOH . E 4 HOH A 22 23 23 HOH HOH . E 4 HOH A 23 24 24 HOH HOH . E 4 HOH A 24 25 25 HOH HOH . E 4 HOH A 25 26 26 HOH HOH . E 4 HOH A 26 27 27 HOH HOH . E 4 HOH A 27 328 1 HOH HOH . E 4 HOH A 28 329 28 HOH HOH . E 4 HOH A 29 330 29 HOH HOH . E 4 HOH A 30 331 30 HOH HOH . E 4 HOH A 31 332 31 HOH HOH . E 4 HOH A 32 333 32 HOH HOH . E 4 HOH A 33 334 33 HOH HOH . E 4 HOH A 34 335 34 HOH HOH . E 4 HOH A 35 336 35 HOH HOH . E 4 HOH A 36 337 36 HOH HOH . E 4 HOH A 37 338 37 HOH HOH . E 4 HOH A 38 339 38 HOH HOH . E 4 HOH A 39 340 39 HOH HOH . E 4 HOH A 40 341 40 HOH HOH . E 4 HOH A 41 342 41 HOH HOH . E 4 HOH A 42 343 42 HOH HOH . E 4 HOH A 43 344 43 HOH HOH . E 4 HOH A 44 345 44 HOH HOH . E 4 HOH A 45 346 45 HOH HOH . E 4 HOH A 46 347 46 HOH HOH . E 4 HOH A 47 348 47 HOH HOH . E 4 HOH A 48 349 48 HOH HOH . E 4 HOH A 49 350 49 HOH HOH . E 4 HOH A 50 351 50 HOH HOH . E 4 HOH A 51 352 51 HOH HOH . E 4 HOH A 52 353 52 HOH HOH . E 4 HOH A 53 354 53 HOH HOH . E 4 HOH A 54 355 54 HOH HOH . E 4 HOH A 55 356 55 HOH HOH . E 4 HOH A 56 357 56 HOH HOH . E 4 HOH A 57 358 57 HOH HOH . E 4 HOH A 58 359 58 HOH HOH . E 4 HOH A 59 360 59 HOH HOH . E 4 HOH A 60 361 60 HOH HOH . E 4 HOH A 61 362 61 HOH HOH . E 4 HOH A 62 363 62 HOH HOH . E 4 HOH A 63 364 63 HOH HOH . E 4 HOH A 64 365 64 HOH HOH . E 4 HOH A 65 366 65 HOH HOH . E 4 HOH A 66 367 66 HOH HOH . E 4 HOH A 67 368 67 HOH HOH . E 4 HOH A 68 369 68 HOH HOH . E 4 HOH A 69 370 69 HOH HOH . E 4 HOH A 70 371 70 HOH HOH . E 4 HOH A 71 372 71 HOH HOH . E 4 HOH A 72 373 72 HOH HOH . E 4 HOH A 73 374 73 HOH HOH . E 4 HOH A 74 375 74 HOH HOH . E 4 HOH A 75 376 75 HOH HOH . E 4 HOH A 76 377 76 HOH HOH . E 4 HOH A 77 378 77 HOH HOH . E 4 HOH A 78 379 78 HOH HOH . E 4 HOH A 79 380 79 HOH HOH . E 4 HOH A 80 381 80 HOH HOH . E 4 HOH A 81 382 81 HOH HOH . E 4 HOH A 82 383 82 HOH HOH . E 4 HOH A 83 384 83 HOH HOH . E 4 HOH A 84 385 84 HOH HOH . E 4 HOH A 85 386 85 HOH HOH . E 4 HOH A 86 387 86 HOH HOH . E 4 HOH A 87 388 87 HOH HOH . E 4 HOH A 88 389 88 HOH HOH . E 4 HOH A 89 390 89 HOH HOH . E 4 HOH A 90 391 90 HOH HOH . E 4 HOH A 91 392 91 HOH HOH . E 4 HOH A 92 393 92 HOH HOH . E 4 HOH A 93 394 93 HOH HOH . E 4 HOH A 94 395 94 HOH HOH . E 4 HOH A 95 396 95 HOH HOH . E 4 HOH A 96 397 96 HOH HOH . E 4 HOH A 97 398 97 HOH HOH . E 4 HOH A 98 399 98 HOH HOH . E 4 HOH A 99 400 99 HOH HOH . E 4 HOH A 100 401 100 HOH HOH . E 4 HOH A 101 402 101 HOH HOH . E 4 HOH A 102 403 102 HOH HOH . E 4 HOH A 103 404 103 HOH HOH . E 4 HOH A 104 405 104 HOH HOH . E 4 HOH A 105 406 105 HOH HOH . E 4 HOH A 106 407 106 HOH HOH . E 4 HOH A 107 408 107 HOH HOH . E 4 HOH A 108 409 108 HOH HOH . E 4 HOH A 109 410 109 HOH HOH . E 4 HOH A 110 411 110 HOH HOH . E 4 HOH A 111 412 111 HOH HOH . E 4 HOH A 112 413 112 HOH HOH . E 4 HOH A 113 414 113 HOH HOH . E 4 HOH A 114 415 114 HOH HOH . E 4 HOH A 115 416 115 HOH HOH . E 4 HOH A 116 417 116 HOH HOH . E 4 HOH A 117 418 117 HOH HOH . E 4 HOH A 118 419 118 HOH HOH . E 4 HOH A 119 420 119 HOH HOH . E 4 HOH A 120 421 120 HOH HOH . E 4 HOH A 121 422 121 HOH HOH . E 4 HOH A 122 423 122 HOH HOH . E 4 HOH A 123 424 123 HOH HOH . E 4 HOH A 124 425 124 HOH HOH . E 4 HOH A 125 426 125 HOH HOH . E 4 HOH A 126 427 126 HOH HOH . E 4 HOH A 127 428 127 HOH HOH . E 4 HOH A 128 429 128 HOH HOH . E 4 HOH A 129 430 129 HOH HOH . E 4 HOH A 130 431 130 HOH HOH . E 4 HOH A 131 432 131 HOH HOH . E 4 HOH A 132 433 132 HOH HOH . E 4 HOH A 133 434 133 HOH HOH . E 4 HOH A 134 435 134 HOH HOH . E 4 HOH A 135 436 135 HOH HOH . E 4 HOH A 136 437 136 HOH HOH . E 4 HOH A 137 438 137 HOH HOH . E 4 HOH A 138 439 138 HOH HOH . E 4 HOH A 139 440 139 HOH HOH . E 4 HOH A 140 441 140 HOH HOH . E 4 HOH A 141 442 141 HOH HOH . E 4 HOH A 142 443 142 HOH HOH . E 4 HOH A 143 444 143 HOH HOH . E 4 HOH A 144 445 144 HOH HOH . E 4 HOH A 145 446 145 HOH HOH . E 4 HOH A 146 447 146 HOH HOH . E 4 HOH A 147 448 147 HOH HOH . E 4 HOH A 148 449 148 HOH HOH . E 4 HOH A 149 450 149 HOH HOH . E 4 HOH A 150 451 150 HOH HOH . E 4 HOH A 151 452 151 HOH HOH . E 4 HOH A 152 453 152 HOH HOH . E 4 HOH A 153 454 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 2 38.637 -3.268 -2.461 1 50.81 ? N1 IMD 327 A 1 HETATM 2 C C2 IMD . . . D 2 38.026 -4.412 -2.024 1 49.71 ? C2 IMD 327 A 1 HETATM 3 N N3 IMD . . . D 2 38.458 -5.417 -2.841 1 48.74 ? N3 IMD 327 A 1 HETATM 4 C C4 IMD . . . D 2 39.325 -4.895 -3.769 1 49.11 ? C4 IMD 327 A 1 HETATM 5 C C5 IMD . . . D 2 39.441 -3.538 -3.535 1 47.04 ? C5 IMD 327 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #