data_3VDR # _model_server_result.job_id 52sUgX0yk_WqM70zKnlDrw _model_server_result.datetime_utc '2024-11-17 07:32:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 3VDR # _exptl.entry_id 3VDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VDR _cell.length_a 91.1 _cell.length_b 91.1 _cell.length_c 262 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OXT ARG 260 A ARG 260 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc2 E CA CA . A CA 301 1_555 Z O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc3 E CA CA . A CA 301 1_555 Z O HOH . A HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 E CA CA . A CA 301 1_555 C OXT ARG 260 C ARG 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc5 B OXT ARG 260 B ARG 260 1_555 K CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc6 K CA CA . B CA 301 1_555 AA O HOH . B HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? metalc ? metalc7 K CA CA . B CA 301 1_555 D OXT ARG 260 D ARG 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 K CA CA . B CA 301 1_555 CA O HOH . D HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VDR _atom_sites.fract_transf_matrix[1][1] 0.010977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 301 262 CA CA . F 3 CL A 1 302 265 CL CL . G 4 NAD A 1 303 501 NAD NAD . H 5 NAI A 1 304 505 NAI NAI . I 6 3HR A 1 305 954 3HR 3HL . J 7 AAE A 1 306 958 AAE AAE . K 2 CA B 1 301 261 CA CA . L 3 CL B 1 302 264 CL CL . M 4 NAD B 1 303 502 NAD NAD . N 5 NAI B 1 304 506 NAI NAI . O 6 3HR B 1 305 955 3HR 3HL . P 7 AAE B 1 306 959 AAE AAE . Q 4 NAD C 1 301 503 NAD NAD . R 5 NAI C 1 302 507 NAI NAI . S 6 3HR C 1 303 956 3HR 3HL . T 7 AAE C 1 304 960 AAE AAE . U 3 CL D 1 301 266 CL CL . V 4 NAD D 1 302 504 NAD NAD . W 5 NAI D 1 303 508 NAI NAI . X 6 3HR D 1 304 957 3HR 3HL . Y 7 AAE D 1 305 961 AAE AAE . Z 8 HOH A 1 401 261 HOH HOH . Z 8 HOH A 2 402 263 HOH HOH . Z 8 HOH A 3 403 264 HOH HOH . Z 8 HOH A 4 404 266 HOH HOH . Z 8 HOH A 5 405 267 HOH HOH . Z 8 HOH A 6 406 268 HOH HOH . Z 8 HOH A 7 407 269 HOH HOH . Z 8 HOH A 8 408 270 HOH HOH . Z 8 HOH A 9 409 271 HOH HOH . Z 8 HOH A 10 410 272 HOH HOH . Z 8 HOH A 11 411 273 HOH HOH . Z 8 HOH A 12 412 274 HOH HOH . Z 8 HOH A 13 413 275 HOH HOH . Z 8 HOH A 14 414 276 HOH HOH . Z 8 HOH A 15 415 277 HOH HOH . Z 8 HOH A 16 416 278 HOH HOH . Z 8 HOH A 17 417 279 HOH HOH . Z 8 HOH A 18 418 280 HOH HOH . Z 8 HOH A 19 419 281 HOH HOH . Z 8 HOH A 20 420 282 HOH HOH . Z 8 HOH A 21 421 283 HOH HOH . Z 8 HOH A 22 422 284 HOH HOH . Z 8 HOH A 23 423 285 HOH HOH . Z 8 HOH A 24 424 286 HOH HOH . Z 8 HOH A 25 425 287 HOH HOH . Z 8 HOH A 26 426 288 HOH HOH . Z 8 HOH A 27 427 289 HOH HOH . Z 8 HOH A 28 428 290 HOH HOH . Z 8 HOH A 29 429 291 HOH HOH . Z 8 HOH A 30 430 292 HOH HOH . Z 8 HOH A 31 431 293 HOH HOH . Z 8 HOH A 32 432 294 HOH HOH . Z 8 HOH A 33 433 295 HOH HOH . Z 8 HOH A 34 434 296 HOH HOH . Z 8 HOH A 35 435 297 HOH HOH . Z 8 HOH A 36 436 298 HOH HOH . Z 8 HOH A 37 437 299 HOH HOH . Z 8 HOH A 38 438 300 HOH HOH . Z 8 HOH A 39 439 301 HOH HOH . Z 8 HOH A 40 440 302 HOH HOH . Z 8 HOH A 41 441 303 HOH HOH . Z 8 HOH A 42 442 304 HOH HOH . Z 8 HOH A 43 443 305 HOH HOH . Z 8 HOH A 44 444 306 HOH HOH . Z 8 HOH A 45 445 307 HOH HOH . Z 8 HOH A 46 446 308 HOH HOH . Z 8 HOH A 47 447 309 HOH HOH . Z 8 HOH A 48 448 310 HOH HOH . Z 8 HOH A 49 449 311 HOH HOH . Z 8 HOH A 50 450 312 HOH HOH . Z 8 HOH A 51 451 313 HOH HOH . Z 8 HOH A 52 452 314 HOH HOH . Z 8 HOH A 53 453 315 HOH HOH . Z 8 HOH A 54 454 316 HOH HOH . Z 8 HOH A 55 455 317 HOH HOH . Z 8 HOH A 56 456 318 HOH HOH . Z 8 HOH A 57 457 319 HOH HOH . Z 8 HOH A 58 458 320 HOH HOH . Z 8 HOH A 59 459 321 HOH HOH . Z 8 HOH A 60 460 322 HOH HOH . Z 8 HOH A 61 461 323 HOH HOH . Z 8 HOH A 62 462 324 HOH HOH . Z 8 HOH A 63 463 325 HOH HOH . Z 8 HOH A 64 464 326 HOH HOH . Z 8 HOH A 65 465 327 HOH HOH . Z 8 HOH A 66 466 298 HOH HOH . Z 8 HOH A 67 467 304 HOH HOH . AA 8 HOH B 1 401 262 HOH HOH . AA 8 HOH B 2 402 263 HOH HOH . AA 8 HOH B 3 403 265 HOH HOH . AA 8 HOH B 4 404 266 HOH HOH . AA 8 HOH B 5 405 267 HOH HOH . AA 8 HOH B 6 406 268 HOH HOH . AA 8 HOH B 7 407 269 HOH HOH . AA 8 HOH B 8 408 270 HOH HOH . AA 8 HOH B 9 409 271 HOH HOH . AA 8 HOH B 10 410 272 HOH HOH . AA 8 HOH B 11 411 273 HOH HOH . AA 8 HOH B 12 412 274 HOH HOH . AA 8 HOH B 13 413 275 HOH HOH . AA 8 HOH B 14 414 276 HOH HOH . AA 8 HOH B 15 415 277 HOH HOH . AA 8 HOH B 16 416 278 HOH HOH . AA 8 HOH B 17 417 279 HOH HOH . AA 8 HOH B 18 418 280 HOH HOH . AA 8 HOH B 19 419 281 HOH HOH . AA 8 HOH B 20 420 282 HOH HOH . AA 8 HOH B 21 421 283 HOH HOH . AA 8 HOH B 22 422 284 HOH HOH . AA 8 HOH B 23 423 285 HOH HOH . AA 8 HOH B 24 424 286 HOH HOH . AA 8 HOH B 25 425 287 HOH HOH . AA 8 HOH B 26 426 288 HOH HOH . AA 8 HOH B 27 427 289 HOH HOH . AA 8 HOH B 28 428 291 HOH HOH . AA 8 HOH B 29 429 292 HOH HOH . AA 8 HOH B 30 430 293 HOH HOH . AA 8 HOH B 31 431 294 HOH HOH . AA 8 HOH B 32 432 295 HOH HOH . AA 8 HOH B 33 433 297 HOH HOH . AA 8 HOH B 34 434 298 HOH HOH . AA 8 HOH B 35 435 299 HOH HOH . AA 8 HOH B 36 436 300 HOH HOH . AA 8 HOH B 37 437 302 HOH HOH . AA 8 HOH B 38 438 303 HOH HOH . AA 8 HOH B 39 439 304 HOH HOH . AA 8 HOH B 40 440 305 HOH HOH . AA 8 HOH B 41 441 306 HOH HOH . AA 8 HOH B 42 442 307 HOH HOH . AA 8 HOH B 43 443 308 HOH HOH . AA 8 HOH B 44 444 309 HOH HOH . AA 8 HOH B 45 445 310 HOH HOH . AA 8 HOH B 46 446 311 HOH HOH . AA 8 HOH B 47 447 312 HOH HOH . AA 8 HOH B 48 448 313 HOH HOH . AA 8 HOH B 49 449 314 HOH HOH . AA 8 HOH B 50 450 297 HOH HOH . AA 8 HOH B 51 451 315 HOH HOH . BA 8 HOH C 1 401 296 HOH HOH . BA 8 HOH C 2 402 301 HOH HOH . BA 8 HOH C 3 403 261 HOH HOH . BA 8 HOH C 4 404 262 HOH HOH . BA 8 HOH C 5 405 263 HOH HOH . BA 8 HOH C 6 406 264 HOH HOH . BA 8 HOH C 7 407 265 HOH HOH . BA 8 HOH C 8 408 266 HOH HOH . BA 8 HOH C 9 409 267 HOH HOH . BA 8 HOH C 10 410 268 HOH HOH . BA 8 HOH C 11 411 269 HOH HOH . BA 8 HOH C 12 412 270 HOH HOH . BA 8 HOH C 13 413 271 HOH HOH . BA 8 HOH C 14 414 272 HOH HOH . BA 8 HOH C 15 415 273 HOH HOH . BA 8 HOH C 16 416 274 HOH HOH . BA 8 HOH C 17 417 275 HOH HOH . BA 8 HOH C 18 418 276 HOH HOH . BA 8 HOH C 19 419 277 HOH HOH . BA 8 HOH C 20 420 278 HOH HOH . BA 8 HOH C 21 421 279 HOH HOH . BA 8 HOH C 22 422 280 HOH HOH . BA 8 HOH C 23 423 281 HOH HOH . BA 8 HOH C 24 424 282 HOH HOH . BA 8 HOH C 25 425 283 HOH HOH . BA 8 HOH C 26 426 284 HOH HOH . BA 8 HOH C 27 427 285 HOH HOH . BA 8 HOH C 28 428 286 HOH HOH . BA 8 HOH C 29 429 287 HOH HOH . BA 8 HOH C 30 430 288 HOH HOH . BA 8 HOH C 31 431 289 HOH HOH . BA 8 HOH C 32 432 290 HOH HOH . BA 8 HOH C 33 433 291 HOH HOH . BA 8 HOH C 34 434 292 HOH HOH . BA 8 HOH C 35 435 293 HOH HOH . BA 8 HOH C 36 436 294 HOH HOH . BA 8 HOH C 37 437 295 HOH HOH . BA 8 HOH C 38 438 296 HOH HOH . BA 8 HOH C 39 439 299 HOH HOH . BA 8 HOH C 40 440 300 HOH HOH . BA 8 HOH C 41 441 301 HOH HOH . BA 8 HOH C 42 442 302 HOH HOH . BA 8 HOH C 43 443 303 HOH HOH . BA 8 HOH C 44 444 304 HOH HOH . BA 8 HOH C 45 445 305 HOH HOH . BA 8 HOH C 46 446 306 HOH HOH . BA 8 HOH C 47 447 307 HOH HOH . BA 8 HOH C 48 448 308 HOH HOH . BA 8 HOH C 49 449 309 HOH HOH . BA 8 HOH C 50 450 310 HOH HOH . BA 8 HOH C 51 451 311 HOH HOH . BA 8 HOH C 52 452 312 HOH HOH . BA 8 HOH C 53 453 313 HOH HOH . BA 8 HOH C 54 454 314 HOH HOH . BA 8 HOH C 55 455 316 HOH HOH . BA 8 HOH C 56 456 317 HOH HOH . BA 8 HOH C 57 457 318 HOH HOH . BA 8 HOH C 58 458 319 HOH HOH . BA 8 HOH C 59 459 320 HOH HOH . BA 8 HOH C 60 460 321 HOH HOH . BA 8 HOH C 61 461 322 HOH HOH . BA 8 HOH C 62 462 323 HOH HOH . BA 8 HOH C 63 463 324 HOH HOH . BA 8 HOH C 64 464 325 HOH HOH . BA 8 HOH C 65 465 326 HOH HOH . BA 8 HOH C 66 466 327 HOH HOH . BA 8 HOH C 67 467 328 HOH HOH . BA 8 HOH C 68 468 329 HOH HOH . BA 8 HOH C 69 469 330 HOH HOH . BA 8 HOH C 70 470 331 HOH HOH . BA 8 HOH C 71 471 332 HOH HOH . BA 8 HOH C 72 472 333 HOH HOH . BA 8 HOH C 73 473 277 HOH HOH . CA 8 HOH D 1 401 261 HOH HOH . CA 8 HOH D 2 402 262 HOH HOH . CA 8 HOH D 3 403 263 HOH HOH . CA 8 HOH D 4 404 264 HOH HOH . CA 8 HOH D 5 405 265 HOH HOH . CA 8 HOH D 6 406 267 HOH HOH . CA 8 HOH D 7 407 268 HOH HOH . CA 8 HOH D 8 408 269 HOH HOH . CA 8 HOH D 9 409 270 HOH HOH . CA 8 HOH D 10 410 271 HOH HOH . CA 8 HOH D 11 411 272 HOH HOH . CA 8 HOH D 12 412 273 HOH HOH . CA 8 HOH D 13 413 274 HOH HOH . CA 8 HOH D 14 414 275 HOH HOH . CA 8 HOH D 15 415 276 HOH HOH . CA 8 HOH D 16 416 278 HOH HOH . CA 8 HOH D 17 417 279 HOH HOH . CA 8 HOH D 18 418 280 HOH HOH . CA 8 HOH D 19 419 281 HOH HOH . CA 8 HOH D 20 420 282 HOH HOH . CA 8 HOH D 21 421 283 HOH HOH . CA 8 HOH D 22 422 284 HOH HOH . CA 8 HOH D 23 423 285 HOH HOH . CA 8 HOH D 24 424 286 HOH HOH . CA 8 HOH D 25 425 287 HOH HOH . CA 8 HOH D 26 426 288 HOH HOH . CA 8 HOH D 27 427 289 HOH HOH . CA 8 HOH D 28 428 290 HOH HOH . CA 8 HOH D 29 429 291 HOH HOH . CA 8 HOH D 30 430 292 HOH HOH . CA 8 HOH D 31 431 293 HOH HOH . CA 8 HOH D 32 432 294 HOH HOH . CA 8 HOH D 33 433 295 HOH HOH . CA 8 HOH D 34 434 296 HOH HOH . CA 8 HOH D 35 435 297 HOH HOH . CA 8 HOH D 36 436 298 HOH HOH . CA 8 HOH D 37 437 299 HOH HOH . CA 8 HOH D 38 438 300 HOH HOH . CA 8 HOH D 39 439 301 HOH HOH . CA 8 HOH D 40 440 302 HOH HOH . CA 8 HOH D 41 441 303 HOH HOH . CA 8 HOH D 42 442 305 HOH HOH . CA 8 HOH D 43 443 306 HOH HOH . CA 8 HOH D 44 444 307 HOH HOH . CA 8 HOH D 45 445 308 HOH HOH . CA 8 HOH D 46 446 309 HOH HOH . CA 8 HOH D 47 447 310 HOH HOH . CA 8 HOH D 48 448 311 HOH HOH . CA 8 HOH D 49 449 312 HOH HOH . CA 8 HOH D 50 450 313 HOH HOH . CA 8 HOH D 51 451 314 HOH HOH . CA 8 HOH D 52 452 315 HOH HOH . CA 8 HOH D 53 453 316 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 6.704 _atom_site.Cartn_y 66.583 _atom_site.Cartn_z 11.184 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 81.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #