data_3VE5 # _model_server_result.job_id 0dnxiPZTb2fzW8D-KL6njQ _model_server_result.datetime_utc '2024-11-08 19:03:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ve5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 3VE5 # _exptl.entry_id 3VE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VE5 _cell.length_a 84.384 _cell.length_b 84.753 _cell.length_c 72.613 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 53 D CYS 55 1_555 C ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc2 A SG CYS 56 D CYS 58 1_555 C ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc3 A SG CYS 65 D CYS 67 1_555 C ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc4 A SG CYS 68 D CYS 70 1_555 C ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc5 B SG CYS 53 A CYS 55 1_555 F ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 B SG CYS 56 A CYS 58 1_555 F ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc7 B SG CYS 65 A CYS 67 1_555 F ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc8 B SG CYS 68 A CYS 70 1_555 F ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 3VE5 _atom_sites.fract_transf_matrix[1][1] 0.011851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN D 1 201 2 ZN ZN . D 3 IMD D 1 202 1 IMD IMD . E 3 IMD D 1 203 1 IMD IMD . F 2 ZN A 1 201 1 ZN ZN . G 3 IMD A 1 202 1 IMD IMD . H 4 HOH D 1 301 1 HOH HOH . H 4 HOH D 2 302 2 HOH HOH . H 4 HOH D 3 303 3 HOH HOH . H 4 HOH D 4 304 4 HOH HOH . H 4 HOH D 5 305 5 HOH HOH . H 4 HOH D 6 306 12 HOH HOH . H 4 HOH D 7 307 13 HOH HOH . H 4 HOH D 8 308 15 HOH HOH . H 4 HOH D 9 309 20 HOH HOH . H 4 HOH D 10 310 21 HOH HOH . H 4 HOH D 11 311 32 HOH HOH . H 4 HOH D 12 312 34 HOH HOH . H 4 HOH D 13 313 36 HOH HOH . H 4 HOH D 14 314 39 HOH HOH . H 4 HOH D 15 315 41 HOH HOH . H 4 HOH D 16 316 46 HOH HOH . H 4 HOH D 17 317 49 HOH HOH . H 4 HOH D 18 318 54 HOH HOH . H 4 HOH D 19 319 6 HOH HOH . H 4 HOH D 20 320 23 HOH HOH . H 4 HOH D 21 321 24 HOH HOH . H 4 HOH D 22 322 33 HOH HOH . H 4 HOH D 23 323 42 HOH HOH . H 4 HOH D 24 324 53 HOH HOH . I 4 HOH A 1 301 7 HOH HOH . I 4 HOH A 2 302 8 HOH HOH . I 4 HOH A 3 303 9 HOH HOH . I 4 HOH A 4 304 10 HOH HOH . I 4 HOH A 5 305 11 HOH HOH . I 4 HOH A 6 306 14 HOH HOH . I 4 HOH A 7 307 17 HOH HOH . I 4 HOH A 8 308 18 HOH HOH . I 4 HOH A 9 309 19 HOH HOH . I 4 HOH A 10 310 22 HOH HOH . I 4 HOH A 11 311 25 HOH HOH . I 4 HOH A 12 312 26 HOH HOH . I 4 HOH A 13 313 27 HOH HOH . I 4 HOH A 14 314 28 HOH HOH . I 4 HOH A 15 315 29 HOH HOH . I 4 HOH A 16 316 30 HOH HOH . I 4 HOH A 17 317 31 HOH HOH . I 4 HOH A 18 318 35 HOH HOH . I 4 HOH A 19 319 37 HOH HOH . I 4 HOH A 20 320 38 HOH HOH . I 4 HOH A 21 321 40 HOH HOH . I 4 HOH A 22 322 43 HOH HOH . I 4 HOH A 23 323 44 HOH HOH . I 4 HOH A 24 324 45 HOH HOH . I 4 HOH A 25 325 47 HOH HOH . I 4 HOH A 26 326 48 HOH HOH . I 4 HOH A 27 327 50 HOH HOH . I 4 HOH A 28 328 51 HOH HOH . I 4 HOH A 29 329 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . G 3 -10.687 26.137 -67.934 1 39.96 ? N1 IMD 202 A 1 HETATM 2 C C2 IMD . . . G 3 -10.77 25.909 -69.261 1 33.81 ? C2 IMD 202 A 1 HETATM 3 N N3 IMD . . . G 3 -10.266 26.989 -69.892 1 31.84 ? N3 IMD 202 A 1 HETATM 4 C C4 IMD . . . G 3 -9.849 27.88 -68.979 1 32.44 ? C4 IMD 202 A 1 HETATM 5 C C5 IMD . . . G 3 -10.112 27.332 -67.731 1 36.96 ? C5 IMD 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #