data_3VE9 # _model_server_result.job_id 7Y7O2Wud0oxx1M6HT-VErg _model_server_result.datetime_utc '2024-11-05 01:28:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ve9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3VE9 # _exptl.entry_id 3VE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.54 _cell.angle_gamma 90 _cell.entry_id 3VE9 _cell.length_a 46.097 _cell.length_b 74.87 _cell.length_c 55.097 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3VE9 _atom_sites.fract_transf_matrix[1][1] 0.021693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002104 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 2 GOL GOL . D 3 PEG A 1 302 1 PEG PEG . E 4 HOH A 1 401 3 HOH HOH . E 4 HOH A 2 402 4 HOH HOH . E 4 HOH A 3 403 5 HOH HOH . E 4 HOH A 4 404 6 HOH HOH . E 4 HOH A 5 405 8 HOH HOH . E 4 HOH A 6 406 9 HOH HOH . E 4 HOH A 7 407 11 HOH HOH . E 4 HOH A 8 408 12 HOH HOH . E 4 HOH A 9 409 14 HOH HOH . E 4 HOH A 10 410 18 HOH HOH . E 4 HOH A 11 411 20 HOH HOH . E 4 HOH A 12 412 26 HOH HOH . E 4 HOH A 13 413 27 HOH HOH . E 4 HOH A 14 414 28 HOH HOH . E 4 HOH A 15 415 31 HOH HOH . E 4 HOH A 16 416 33 HOH HOH . E 4 HOH A 17 417 35 HOH HOH . E 4 HOH A 18 418 36 HOH HOH . E 4 HOH A 19 419 39 HOH HOH . E 4 HOH A 20 420 40 HOH HOH . E 4 HOH A 21 421 42 HOH HOH . E 4 HOH A 22 422 46 HOH HOH . E 4 HOH A 23 423 57 HOH HOH . E 4 HOH A 24 424 59 HOH HOH . E 4 HOH A 25 425 60 HOH HOH . E 4 HOH A 26 426 63 HOH HOH . E 4 HOH A 27 427 67 HOH HOH . E 4 HOH A 28 428 68 HOH HOH . E 4 HOH A 29 429 69 HOH HOH . E 4 HOH A 30 430 71 HOH HOH . E 4 HOH A 31 431 72 HOH HOH . E 4 HOH A 32 432 79 HOH HOH . E 4 HOH A 33 433 81 HOH HOH . E 4 HOH A 34 434 82 HOH HOH . E 4 HOH A 35 435 83 HOH HOH . E 4 HOH A 36 436 86 HOH HOH . E 4 HOH A 37 437 88 HOH HOH . E 4 HOH A 38 438 89 HOH HOH . E 4 HOH A 39 439 91 HOH HOH . E 4 HOH A 40 440 92 HOH HOH . E 4 HOH A 41 441 93 HOH HOH . E 4 HOH A 42 442 94 HOH HOH . E 4 HOH A 43 443 105 HOH HOH . E 4 HOH A 44 444 106 HOH HOH . E 4 HOH A 45 445 107 HOH HOH . E 4 HOH A 46 446 111 HOH HOH . E 4 HOH A 47 447 114 HOH HOH . E 4 HOH A 48 448 115 HOH HOH . E 4 HOH A 49 449 116 HOH HOH . E 4 HOH A 50 450 119 HOH HOH . E 4 HOH A 51 451 120 HOH HOH . E 4 HOH A 52 452 125 HOH HOH . E 4 HOH A 53 453 128 HOH HOH . E 4 HOH A 54 454 130 HOH HOH . E 4 HOH A 55 455 131 HOH HOH . E 4 HOH A 56 456 134 HOH HOH . E 4 HOH A 57 457 135 HOH HOH . E 4 HOH A 58 458 140 HOH HOH . E 4 HOH A 59 459 141 HOH HOH . E 4 HOH A 60 460 142 HOH HOH . E 4 HOH A 61 461 147 HOH HOH . E 4 HOH A 62 462 148 HOH HOH . E 4 HOH A 63 463 150 HOH HOH . E 4 HOH A 64 464 152 HOH HOH . E 4 HOH A 65 465 153 HOH HOH . E 4 HOH A 66 466 154 HOH HOH . E 4 HOH A 67 467 155 HOH HOH . E 4 HOH A 68 468 156 HOH HOH . E 4 HOH A 69 469 162 HOH HOH . E 4 HOH A 70 470 163 HOH HOH . E 4 HOH A 71 471 164 HOH HOH . E 4 HOH A 72 472 170 HOH HOH . E 4 HOH A 73 473 173 HOH HOH . E 4 HOH A 74 474 174 HOH HOH . E 4 HOH A 75 475 176 HOH HOH . E 4 HOH A 76 476 177 HOH HOH . E 4 HOH A 77 477 178 HOH HOH . E 4 HOH A 78 478 179 HOH HOH . E 4 HOH A 79 479 180 HOH HOH . E 4 HOH A 80 480 181 HOH HOH . E 4 HOH A 81 481 183 HOH HOH . E 4 HOH A 82 482 184 HOH HOH . E 4 HOH A 83 483 188 HOH HOH . E 4 HOH A 84 484 189 HOH HOH . E 4 HOH A 85 485 191 HOH HOH . E 4 HOH A 86 486 192 HOH HOH . E 4 HOH A 87 487 193 HOH HOH . E 4 HOH A 88 488 194 HOH HOH . E 4 HOH A 89 489 198 HOH HOH . E 4 HOH A 90 490 199 HOH HOH . E 4 HOH A 91 491 202 HOH HOH . E 4 HOH A 92 492 204 HOH HOH . E 4 HOH A 93 493 212 HOH HOH . E 4 HOH A 94 494 214 HOH HOH . E 4 HOH A 95 495 219 HOH HOH . E 4 HOH A 96 496 220 HOH HOH . E 4 HOH A 97 497 221 HOH HOH . E 4 HOH A 98 498 222 HOH HOH . E 4 HOH A 99 499 223 HOH HOH . E 4 HOH A 100 500 225 HOH HOH . E 4 HOH A 101 501 228 HOH HOH . E 4 HOH A 102 502 234 HOH HOH . E 4 HOH A 103 503 235 HOH HOH . E 4 HOH A 104 504 239 HOH HOH . E 4 HOH A 105 505 242 HOH HOH . E 4 HOH A 106 506 243 HOH HOH . E 4 HOH A 107 507 246 HOH HOH . E 4 HOH A 108 508 249 HOH HOH . E 4 HOH A 109 509 250 HOH HOH . E 4 HOH A 110 510 254 HOH HOH . E 4 HOH A 111 511 255 HOH HOH . E 4 HOH A 112 512 256 HOH HOH . E 4 HOH A 113 513 258 HOH HOH . E 4 HOH A 114 514 261 HOH HOH . E 4 HOH A 115 515 262 HOH HOH . E 4 HOH A 116 516 263 HOH HOH . E 4 HOH A 117 517 264 HOH HOH . E 4 HOH A 118 518 266 HOH HOH . E 4 HOH A 119 519 267 HOH HOH . E 4 HOH A 120 520 279 HOH HOH . E 4 HOH A 121 521 285 HOH HOH . E 4 HOH A 122 522 286 HOH HOH . E 4 HOH A 123 523 288 HOH HOH . E 4 HOH A 124 524 290 HOH HOH . E 4 HOH A 125 525 291 HOH HOH . E 4 HOH A 126 526 292 HOH HOH . E 4 HOH A 127 527 295 HOH HOH . E 4 HOH A 128 528 296 HOH HOH . E 4 HOH A 129 529 297 HOH HOH . E 4 HOH A 130 530 303 HOH HOH . E 4 HOH A 131 531 304 HOH HOH . E 4 HOH A 132 532 305 HOH HOH . E 4 HOH A 133 533 308 HOH HOH . E 4 HOH A 134 534 310 HOH HOH . E 4 HOH A 135 535 311 HOH HOH . E 4 HOH A 136 536 314 HOH HOH . E 4 HOH A 137 537 315 HOH HOH . E 4 HOH A 138 538 318 HOH HOH . E 4 HOH A 139 539 321 HOH HOH . E 4 HOH A 140 540 322 HOH HOH . E 4 HOH A 141 541 330 HOH HOH . E 4 HOH A 142 542 331 HOH HOH . E 4 HOH A 143 543 336 HOH HOH . E 4 HOH A 144 544 338 HOH HOH . E 4 HOH A 145 545 341 HOH HOH . E 4 HOH A 146 546 342 HOH HOH . E 4 HOH A 147 547 356 HOH HOH . E 4 HOH A 148 548 357 HOH HOH . E 4 HOH A 149 549 358 HOH HOH . E 4 HOH A 150 550 359 HOH HOH . E 4 HOH A 151 551 361 HOH HOH . E 4 HOH A 152 552 372 HOH HOH . E 4 HOH A 153 553 375 HOH HOH . E 4 HOH A 154 554 376 HOH HOH . F 4 HOH B 1 301 1 HOH HOH . F 4 HOH B 2 302 2 HOH HOH . F 4 HOH B 3 303 7 HOH HOH . F 4 HOH B 4 304 10 HOH HOH . F 4 HOH B 5 305 13 HOH HOH . F 4 HOH B 6 306 15 HOH HOH . F 4 HOH B 7 307 16 HOH HOH . F 4 HOH B 8 308 17 HOH HOH . F 4 HOH B 9 309 19 HOH HOH . F 4 HOH B 10 310 21 HOH HOH . F 4 HOH B 11 311 22 HOH HOH . F 4 HOH B 12 312 23 HOH HOH . F 4 HOH B 13 313 24 HOH HOH . F 4 HOH B 14 314 25 HOH HOH . F 4 HOH B 15 315 29 HOH HOH . F 4 HOH B 16 316 30 HOH HOH . F 4 HOH B 17 317 32 HOH HOH . F 4 HOH B 18 318 34 HOH HOH . F 4 HOH B 19 319 37 HOH HOH . F 4 HOH B 20 320 38 HOH HOH . F 4 HOH B 21 321 41 HOH HOH . F 4 HOH B 22 322 43 HOH HOH . F 4 HOH B 23 323 44 HOH HOH . F 4 HOH B 24 324 45 HOH HOH . F 4 HOH B 25 325 47 HOH HOH . F 4 HOH B 26 326 48 HOH HOH . F 4 HOH B 27 327 49 HOH HOH . F 4 HOH B 28 328 50 HOH HOH . F 4 HOH B 29 329 51 HOH HOH . F 4 HOH B 30 330 53 HOH HOH . F 4 HOH B 31 331 54 HOH HOH . F 4 HOH B 32 332 55 HOH HOH . F 4 HOH B 33 333 56 HOH HOH . F 4 HOH B 34 334 58 HOH HOH . F 4 HOH B 35 335 61 HOH HOH . F 4 HOH B 36 336 62 HOH HOH . F 4 HOH B 37 337 64 HOH HOH . F 4 HOH B 38 338 65 HOH HOH . F 4 HOH B 39 339 70 HOH HOH . F 4 HOH B 40 340 73 HOH HOH . F 4 HOH B 41 341 74 HOH HOH . F 4 HOH B 42 342 75 HOH HOH . F 4 HOH B 43 343 76 HOH HOH . F 4 HOH B 44 344 77 HOH HOH . F 4 HOH B 45 345 78 HOH HOH . F 4 HOH B 46 346 80 HOH HOH . F 4 HOH B 47 347 85 HOH HOH . F 4 HOH B 48 348 87 HOH HOH . F 4 HOH B 49 349 95 HOH HOH . F 4 HOH B 50 350 96 HOH HOH . F 4 HOH B 51 351 97 HOH HOH . F 4 HOH B 52 352 98 HOH HOH . F 4 HOH B 53 353 99 HOH HOH . F 4 HOH B 54 354 101 HOH HOH . F 4 HOH B 55 355 103 HOH HOH . F 4 HOH B 56 356 104 HOH HOH . F 4 HOH B 57 357 108 HOH HOH . F 4 HOH B 58 358 109 HOH HOH . F 4 HOH B 59 359 110 HOH HOH . F 4 HOH B 60 360 113 HOH HOH . F 4 HOH B 61 361 117 HOH HOH . F 4 HOH B 62 362 118 HOH HOH . F 4 HOH B 63 363 122 HOH HOH . F 4 HOH B 64 364 124 HOH HOH . F 4 HOH B 65 365 126 HOH HOH . F 4 HOH B 66 366 127 HOH HOH . F 4 HOH B 67 367 129 HOH HOH . F 4 HOH B 68 368 132 HOH HOH . F 4 HOH B 69 369 133 HOH HOH . F 4 HOH B 70 370 136 HOH HOH . F 4 HOH B 71 371 137 HOH HOH . F 4 HOH B 72 372 138 HOH HOH . F 4 HOH B 73 373 143 HOH HOH . F 4 HOH B 74 374 145 HOH HOH . F 4 HOH B 75 375 146 HOH HOH . F 4 HOH B 76 376 149 HOH HOH . F 4 HOH B 77 377 151 HOH HOH . F 4 HOH B 78 378 157 HOH HOH . F 4 HOH B 79 379 158 HOH HOH . F 4 HOH B 80 380 159 HOH HOH . F 4 HOH B 81 381 160 HOH HOH . F 4 HOH B 82 382 161 HOH HOH . F 4 HOH B 83 383 165 HOH HOH . F 4 HOH B 84 384 169 HOH HOH . F 4 HOH B 85 385 171 HOH HOH . F 4 HOH B 86 386 172 HOH HOH . F 4 HOH B 87 387 175 HOH HOH . F 4 HOH B 88 388 182 HOH HOH . F 4 HOH B 89 389 185 HOH HOH . F 4 HOH B 90 390 187 HOH HOH . F 4 HOH B 91 391 190 HOH HOH . F 4 HOH B 92 392 195 HOH HOH . F 4 HOH B 93 393 196 HOH HOH . F 4 HOH B 94 394 197 HOH HOH . F 4 HOH B 95 395 200 HOH HOH . F 4 HOH B 96 396 201 HOH HOH . F 4 HOH B 97 397 203 HOH HOH . F 4 HOH B 98 398 206 HOH HOH . F 4 HOH B 99 399 207 HOH HOH . F 4 HOH B 100 400 208 HOH HOH . F 4 HOH B 101 401 209 HOH HOH . F 4 HOH B 102 402 211 HOH HOH . F 4 HOH B 103 403 215 HOH HOH . F 4 HOH B 104 404 218 HOH HOH . F 4 HOH B 105 405 226 HOH HOH . F 4 HOH B 106 406 229 HOH HOH . F 4 HOH B 107 407 230 HOH HOH . F 4 HOH B 108 408 231 HOH HOH . F 4 HOH B 109 409 232 HOH HOH . F 4 HOH B 110 410 233 HOH HOH . F 4 HOH B 111 411 238 HOH HOH . F 4 HOH B 112 412 240 HOH HOH . F 4 HOH B 113 413 241 HOH HOH . F 4 HOH B 114 414 244 HOH HOH . F 4 HOH B 115 415 245 HOH HOH . F 4 HOH B 116 416 247 HOH HOH . F 4 HOH B 117 417 248 HOH HOH . F 4 HOH B 118 418 253 HOH HOH . F 4 HOH B 119 419 257 HOH HOH . F 4 HOH B 120 420 265 HOH HOH . F 4 HOH B 121 421 269 HOH HOH . F 4 HOH B 122 422 271 HOH HOH . F 4 HOH B 123 423 272 HOH HOH . F 4 HOH B 124 424 273 HOH HOH . F 4 HOH B 125 425 274 HOH HOH . F 4 HOH B 126 426 275 HOH HOH . F 4 HOH B 127 427 276 HOH HOH . F 4 HOH B 128 428 277 HOH HOH . F 4 HOH B 129 429 278 HOH HOH . F 4 HOH B 130 430 280 HOH HOH . F 4 HOH B 131 431 287 HOH HOH . F 4 HOH B 132 432 289 HOH HOH . F 4 HOH B 133 433 294 HOH HOH . F 4 HOH B 134 434 298 HOH HOH . F 4 HOH B 135 435 299 HOH HOH . F 4 HOH B 136 436 300 HOH HOH . F 4 HOH B 137 437 301 HOH HOH . F 4 HOH B 138 438 302 HOH HOH . F 4 HOH B 139 439 307 HOH HOH . F 4 HOH B 140 440 309 HOH HOH . F 4 HOH B 141 441 312 HOH HOH . F 4 HOH B 142 442 313 HOH HOH . F 4 HOH B 143 443 316 HOH HOH . F 4 HOH B 144 444 319 HOH HOH . F 4 HOH B 145 445 320 HOH HOH . F 4 HOH B 146 446 323 HOH HOH . F 4 HOH B 147 447 324 HOH HOH . F 4 HOH B 148 448 325 HOH HOH . F 4 HOH B 149 449 326 HOH HOH . F 4 HOH B 150 450 327 HOH HOH . F 4 HOH B 151 451 328 HOH HOH . F 4 HOH B 152 452 329 HOH HOH . F 4 HOH B 153 453 332 HOH HOH . F 4 HOH B 154 454 333 HOH HOH . F 4 HOH B 155 455 334 HOH HOH . F 4 HOH B 156 456 335 HOH HOH . F 4 HOH B 157 457 337 HOH HOH . F 4 HOH B 158 458 340 HOH HOH . F 4 HOH B 159 459 344 HOH HOH . F 4 HOH B 160 460 353 HOH HOH . F 4 HOH B 161 461 354 HOH HOH . F 4 HOH B 162 462 355 HOH HOH . F 4 HOH B 163 463 360 HOH HOH . F 4 HOH B 164 464 374 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -4.482 12.603 -12.514 1 26.21 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 2 -5.045 13.829 -12.926 1 30.56 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 2 -3.109 12.356 -13.129 1 28.93 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 2 -2.299 11.744 -12.156 1 31.68 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 2 -3.221 11.436 -14.34 1 28.12 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 2 -2.742 10.141 -14.031 1 36.83 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #