data_3VES # _model_server_result.job_id R1Efr5iHl6aLZesptc2koQ _model_server_result.datetime_utc '2024-11-05 00:58:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ves # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 3VES # _exptl.entry_id 3VES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VES _cell.length_a 98.741 _cell.length_b 98.741 _cell.length_c 281.099 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VES _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 120 A HIS 114 1_555 F FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc2 A NE2 HIS 124 A HIS 118 1_555 F FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc3 A OD2 ASP 143 A ASP 137 1_555 F FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 A OD1 ASP 143 A ASP 137 1_555 F FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc5 A OD2 ASP 344 A ASP 338 1_555 F FE FE2 . A FE2 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc6 A OG SER 536 A SER 530 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc7 B O2P CP . A CP 601 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc8 C O2G APC . A APC 602 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc9 C O2B APC . A APC 602 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc10 D MN MN . A MN 603 1_555 H O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc11 D MN MN . A MN 603 1_555 H O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc12 F FE FE2 . A FE2 605 1_555 H O HOH . A HOH 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 145 n n C1 C2 EDO sing 146 n n C1 H11 EDO sing 147 n n C1 H12 EDO sing 148 n n O1 HO1 EDO sing 149 n n C2 O2 EDO sing 150 n n C2 H21 EDO sing 151 n n C2 H22 EDO sing 152 n n O2 HO2 EDO sing 153 n n # _atom_sites.entry_id 3VES _atom_sites.fract_transf_matrix[1][1] 0.010128 _atom_sites.fract_transf_matrix[1][2] 0.005847 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CP A 1 601 1 CP CP . C 3 APC A 1 602 2 APC APC . D 4 MN A 1 603 3 MN MN . E 5 K A 1 604 2 K K . F 6 FE2 A 1 605 1 FE2 FE . G 7 EDO A 1 606 1 EDO EDO . H 8 HOH A 1 701 1 HOH HOH . H 8 HOH A 2 702 2 HOH HOH . H 8 HOH A 3 703 3 HOH HOH . H 8 HOH A 4 704 4 HOH HOH . H 8 HOH A 5 705 5 HOH HOH . H 8 HOH A 6 706 6 HOH HOH . H 8 HOH A 7 707 7 HOH HOH . H 8 HOH A 8 708 8 HOH HOH . H 8 HOH A 9 709 9 HOH HOH . H 8 HOH A 10 710 10 HOH HOH . H 8 HOH A 11 711 11 HOH HOH . H 8 HOH A 12 712 12 HOH HOH . H 8 HOH A 13 713 13 HOH HOH . H 8 HOH A 14 714 14 HOH HOH . H 8 HOH A 15 715 15 HOH HOH . H 8 HOH A 16 716 16 HOH HOH . H 8 HOH A 17 717 17 HOH HOH . H 8 HOH A 18 718 18 HOH HOH . H 8 HOH A 19 719 19 HOH HOH . H 8 HOH A 20 720 20 HOH HOH . H 8 HOH A 21 721 21 HOH HOH . H 8 HOH A 22 722 22 HOH HOH . H 8 HOH A 23 723 23 HOH HOH . H 8 HOH A 24 724 24 HOH HOH . H 8 HOH A 25 725 25 HOH HOH . H 8 HOH A 26 726 26 HOH HOH . H 8 HOH A 27 727 27 HOH HOH . H 8 HOH A 28 728 28 HOH HOH . H 8 HOH A 29 729 29 HOH HOH . H 8 HOH A 30 730 30 HOH HOH . H 8 HOH A 31 731 31 HOH HOH . H 8 HOH A 32 732 32 HOH HOH . H 8 HOH A 33 733 33 HOH HOH . H 8 HOH A 34 734 34 HOH HOH . H 8 HOH A 35 735 35 HOH HOH . H 8 HOH A 36 736 36 HOH HOH . H 8 HOH A 37 737 37 HOH HOH . H 8 HOH A 38 738 38 HOH HOH . H 8 HOH A 39 739 39 HOH HOH . H 8 HOH A 40 740 40 HOH HOH . H 8 HOH A 41 741 41 HOH HOH . H 8 HOH A 42 742 42 HOH HOH . H 8 HOH A 43 743 43 HOH HOH . H 8 HOH A 44 744 44 HOH HOH . H 8 HOH A 45 745 45 HOH HOH . H 8 HOH A 46 746 46 HOH HOH . H 8 HOH A 47 747 47 HOH HOH . H 8 HOH A 48 748 48 HOH HOH . H 8 HOH A 49 749 49 HOH HOH . H 8 HOH A 50 750 50 HOH HOH . H 8 HOH A 51 751 51 HOH HOH . H 8 HOH A 52 752 52 HOH HOH . H 8 HOH A 53 753 53 HOH HOH . H 8 HOH A 54 754 54 HOH HOH . H 8 HOH A 55 755 55 HOH HOH . H 8 HOH A 56 756 56 HOH HOH . H 8 HOH A 57 757 57 HOH HOH . H 8 HOH A 58 758 58 HOH HOH . H 8 HOH A 59 759 59 HOH HOH . H 8 HOH A 60 760 60 HOH HOH . H 8 HOH A 61 761 61 HOH HOH . H 8 HOH A 62 762 62 HOH HOH . H 8 HOH A 63 763 63 HOH HOH . H 8 HOH A 64 764 64 HOH HOH . H 8 HOH A 65 765 65 HOH HOH . H 8 HOH A 66 766 66 HOH HOH . H 8 HOH A 67 767 67 HOH HOH . H 8 HOH A 68 768 68 HOH HOH . H 8 HOH A 69 769 69 HOH HOH . H 8 HOH A 70 770 70 HOH HOH . H 8 HOH A 71 771 71 HOH HOH . H 8 HOH A 72 772 72 HOH HOH . H 8 HOH A 73 773 73 HOH HOH . H 8 HOH A 74 774 74 HOH HOH . H 8 HOH A 75 775 75 HOH HOH . H 8 HOH A 76 776 76 HOH HOH . H 8 HOH A 77 777 77 HOH HOH . H 8 HOH A 78 778 78 HOH HOH . H 8 HOH A 79 779 79 HOH HOH . H 8 HOH A 80 780 80 HOH HOH . H 8 HOH A 81 781 81 HOH HOH . H 8 HOH A 82 782 83 HOH HOH . H 8 HOH A 83 783 84 HOH HOH . H 8 HOH A 84 784 85 HOH HOH . H 8 HOH A 85 785 86 HOH HOH . H 8 HOH A 86 786 87 HOH HOH . H 8 HOH A 87 787 88 HOH HOH . H 8 HOH A 88 788 89 HOH HOH . H 8 HOH A 89 789 90 HOH HOH . H 8 HOH A 90 790 91 HOH HOH . H 8 HOH A 91 791 92 HOH HOH . H 8 HOH A 92 792 93 HOH HOH . H 8 HOH A 93 793 94 HOH HOH . H 8 HOH A 94 794 95 HOH HOH . H 8 HOH A 95 795 96 HOH HOH . H 8 HOH A 96 796 97 HOH HOH . H 8 HOH A 97 797 98 HOH HOH . H 8 HOH A 98 798 99 HOH HOH . H 8 HOH A 99 799 100 HOH HOH . H 8 HOH A 100 800 101 HOH HOH . H 8 HOH A 101 801 102 HOH HOH . H 8 HOH A 102 802 103 HOH HOH . H 8 HOH A 103 803 104 HOH HOH . H 8 HOH A 104 804 106 HOH HOH . H 8 HOH A 105 805 107 HOH HOH . H 8 HOH A 106 806 108 HOH HOH . H 8 HOH A 107 807 109 HOH HOH . H 8 HOH A 108 808 110 HOH HOH . H 8 HOH A 109 809 112 HOH HOH . H 8 HOH A 110 810 113 HOH HOH . H 8 HOH A 111 811 114 HOH HOH . H 8 HOH A 112 812 115 HOH HOH . H 8 HOH A 113 813 116 HOH HOH . H 8 HOH A 114 814 117 HOH HOH . H 8 HOH A 115 815 118 HOH HOH . H 8 HOH A 116 816 119 HOH HOH . H 8 HOH A 117 817 120 HOH HOH . H 8 HOH A 118 818 122 HOH HOH . H 8 HOH A 119 819 123 HOH HOH . H 8 HOH A 120 820 124 HOH HOH . H 8 HOH A 121 821 125 HOH HOH . H 8 HOH A 122 822 126 HOH HOH . H 8 HOH A 123 823 128 HOH HOH . H 8 HOH A 124 824 129 HOH HOH . H 8 HOH A 125 825 131 HOH HOH . H 8 HOH A 126 826 132 HOH HOH . H 8 HOH A 127 827 133 HOH HOH . H 8 HOH A 128 828 134 HOH HOH . H 8 HOH A 129 829 135 HOH HOH . H 8 HOH A 130 830 136 HOH HOH . H 8 HOH A 131 831 137 HOH HOH . H 8 HOH A 132 832 138 HOH HOH . H 8 HOH A 133 833 139 HOH HOH . H 8 HOH A 134 834 140 HOH HOH . H 8 HOH A 135 835 141 HOH HOH . H 8 HOH A 136 836 142 HOH HOH . H 8 HOH A 137 837 143 HOH HOH . H 8 HOH A 138 838 144 HOH HOH . H 8 HOH A 139 839 145 HOH HOH . H 8 HOH A 140 840 146 HOH HOH . H 8 HOH A 141 841 147 HOH HOH . H 8 HOH A 142 842 148 HOH HOH . H 8 HOH A 143 843 149 HOH HOH . H 8 HOH A 144 844 151 HOH HOH . H 8 HOH A 145 845 152 HOH HOH . H 8 HOH A 146 846 153 HOH HOH . H 8 HOH A 147 847 154 HOH HOH . H 8 HOH A 148 848 155 HOH HOH . H 8 HOH A 149 849 156 HOH HOH . H 8 HOH A 150 850 157 HOH HOH . H 8 HOH A 151 851 158 HOH HOH . H 8 HOH A 152 852 161 HOH HOH . H 8 HOH A 153 853 162 HOH HOH . H 8 HOH A 154 854 163 HOH HOH . H 8 HOH A 155 855 164 HOH HOH . H 8 HOH A 156 856 165 HOH HOH . H 8 HOH A 157 857 166 HOH HOH . H 8 HOH A 158 858 167 HOH HOH . H 8 HOH A 159 859 168 HOH HOH . H 8 HOH A 160 860 169 HOH HOH . H 8 HOH A 161 861 171 HOH HOH . H 8 HOH A 162 862 172 HOH HOH . H 8 HOH A 163 863 173 HOH HOH . H 8 HOH A 164 864 174 HOH HOH . H 8 HOH A 165 865 175 HOH HOH . H 8 HOH A 166 866 176 HOH HOH . H 8 HOH A 167 867 177 HOH HOH . H 8 HOH A 168 868 178 HOH HOH . H 8 HOH A 169 869 179 HOH HOH . H 8 HOH A 170 870 180 HOH HOH . H 8 HOH A 171 871 181 HOH HOH . H 8 HOH A 172 872 182 HOH HOH . H 8 HOH A 173 873 183 HOH HOH . H 8 HOH A 174 874 184 HOH HOH . H 8 HOH A 175 875 185 HOH HOH . H 8 HOH A 176 876 186 HOH HOH . H 8 HOH A 177 877 187 HOH HOH . H 8 HOH A 178 878 189 HOH HOH . H 8 HOH A 179 879 190 HOH HOH . H 8 HOH A 180 880 191 HOH HOH . H 8 HOH A 181 881 192 HOH HOH . H 8 HOH A 182 882 193 HOH HOH . H 8 HOH A 183 883 194 HOH HOH . H 8 HOH A 184 884 195 HOH HOH . H 8 HOH A 185 885 196 HOH HOH . H 8 HOH A 186 886 197 HOH HOH . H 8 HOH A 187 887 198 HOH HOH . H 8 HOH A 188 888 199 HOH HOH . H 8 HOH A 189 889 200 HOH HOH . H 8 HOH A 190 890 201 HOH HOH . H 8 HOH A 191 891 203 HOH HOH . H 8 HOH A 192 892 204 HOH HOH . H 8 HOH A 193 893 205 HOH HOH . H 8 HOH A 194 894 207 HOH HOH . H 8 HOH A 195 895 208 HOH HOH . H 8 HOH A 196 896 209 HOH HOH . H 8 HOH A 197 897 210 HOH HOH . H 8 HOH A 198 898 211 HOH HOH . H 8 HOH A 199 899 212 HOH HOH . H 8 HOH A 200 900 213 HOH HOH . H 8 HOH A 201 901 214 HOH HOH . H 8 HOH A 202 902 216 HOH HOH . H 8 HOH A 203 903 217 HOH HOH . H 8 HOH A 204 904 218 HOH HOH . H 8 HOH A 205 905 219 HOH HOH . H 8 HOH A 206 906 221 HOH HOH . H 8 HOH A 207 907 222 HOH HOH . H 8 HOH A 208 908 223 HOH HOH . H 8 HOH A 209 909 224 HOH HOH . H 8 HOH A 210 910 225 HOH HOH . H 8 HOH A 211 911 226 HOH HOH . H 8 HOH A 212 912 227 HOH HOH . H 8 HOH A 213 913 228 HOH HOH . H 8 HOH A 214 914 229 HOH HOH . H 8 HOH A 215 915 230 HOH HOH . H 8 HOH A 216 916 231 HOH HOH . H 8 HOH A 217 917 232 HOH HOH . H 8 HOH A 218 918 233 HOH HOH . H 8 HOH A 219 919 234 HOH HOH . H 8 HOH A 220 920 235 HOH HOH . H 8 HOH A 221 921 238 HOH HOH . H 8 HOH A 222 922 240 HOH HOH . H 8 HOH A 223 923 241 HOH HOH . H 8 HOH A 224 924 242 HOH HOH . H 8 HOH A 225 925 243 HOH HOH . H 8 HOH A 226 926 244 HOH HOH . H 8 HOH A 227 927 245 HOH HOH . H 8 HOH A 228 928 246 HOH HOH . H 8 HOH A 229 929 247 HOH HOH . H 8 HOH A 230 930 249 HOH HOH . H 8 HOH A 231 931 250 HOH HOH . H 8 HOH A 232 932 251 HOH HOH . H 8 HOH A 233 933 252 HOH HOH . H 8 HOH A 234 934 253 HOH HOH . H 8 HOH A 235 935 255 HOH HOH . H 8 HOH A 236 936 258 HOH HOH . H 8 HOH A 237 937 259 HOH HOH . H 8 HOH A 238 938 260 HOH HOH . H 8 HOH A 239 939 262 HOH HOH . H 8 HOH A 240 940 263 HOH HOH . H 8 HOH A 241 941 265 HOH HOH . H 8 HOH A 242 942 267 HOH HOH . H 8 HOH A 243 943 268 HOH HOH . H 8 HOH A 244 944 269 HOH HOH . H 8 HOH A 245 945 270 HOH HOH . H 8 HOH A 246 946 271 HOH HOH . H 8 HOH A 247 947 272 HOH HOH . H 8 HOH A 248 948 273 HOH HOH . H 8 HOH A 249 949 274 HOH HOH . H 8 HOH A 250 950 275 HOH HOH . H 8 HOH A 251 951 277 HOH HOH . H 8 HOH A 252 952 278 HOH HOH . H 8 HOH A 253 953 279 HOH HOH . H 8 HOH A 254 954 280 HOH HOH . H 8 HOH A 255 955 281 HOH HOH . H 8 HOH A 256 956 283 HOH HOH . H 8 HOH A 257 957 285 HOH HOH . H 8 HOH A 258 958 286 HOH HOH . H 8 HOH A 259 959 287 HOH HOH . H 8 HOH A 260 960 288 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 7 36.158 40.525 29.034 1 38.05 ? C1 EDO 606 A 1 HETATM 2 O O1 EDO . . . G 7 35.202 41.185 29.881 1 33.15 ? O1 EDO 606 A 1 HETATM 3 C C2 EDO . . . G 7 37.563 40.944 29.455 1 34.69 ? C2 EDO 606 A 1 HETATM 4 O O2 EDO . . . G 7 37.592 42.372 29.645 1 31.94 ? O2 EDO 606 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #