data_3VEY # _model_server_result.job_id isw-rjznFLCYIj2TEPAoIQ _model_server_result.datetime_utc '2024-12-08 05:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3VEY # _exptl.entry_id 3VEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VEY _cell.length_a 80.387 _cell.length_b 80.387 _cell.length_c 324.334 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 228 A MET 238 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc2 A O VAL 231 A VAL 241 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc3 A O VAL 234 A VAL 244 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc4 A O GLY 236 A GLY 246 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 166 n n C1 O1 GLC sing 167 n n C1 O5 GLC sing 168 n n C1 H1 GLC sing 169 n n C2 C3 GLC sing 170 n n C2 O2 GLC sing 171 n n C2 H2 GLC sing 172 n n C3 C4 GLC sing 173 n n C3 O3 GLC sing 174 n n C3 H3 GLC sing 175 n n C4 C5 GLC sing 176 n n C4 O4 GLC sing 177 n n C4 H4 GLC sing 178 n n C5 C6 GLC sing 179 n n C5 O5 GLC sing 180 n n C5 H5 GLC sing 181 n n C6 O6 GLC sing 182 n n C6 H61 GLC sing 183 n n C6 H62 GLC sing 184 n n O1 HO1 GLC sing 185 n n O2 HO2 GLC sing 186 n n O3 HO3 GLC sing 187 n n O4 HO4 GLC sing 188 n n O6 HO6 GLC sing 189 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3VEY _atom_sites.fract_transf_matrix[1][1] 0.01244 _atom_sites.fract_transf_matrix[1][2] 0.007182 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 501 500 GLC GLC . C 3 NA A 1 502 600 NA NA . D 4 AGS A 1 503 604 AGS AGS . E 5 0H5 A 1 504 501 0H5 0H5 . F 6 HOH A 1 601 1 HOH HOH . F 6 HOH A 2 602 2 HOH HOH . F 6 HOH A 3 603 3 HOH HOH . F 6 HOH A 4 604 4 HOH HOH . F 6 HOH A 5 605 5 HOH HOH . F 6 HOH A 6 606 6 HOH HOH . F 6 HOH A 7 607 7 HOH HOH . F 6 HOH A 8 608 8 HOH HOH . F 6 HOH A 9 609 9 HOH HOH . F 6 HOH A 10 610 10 HOH HOH . F 6 HOH A 11 611 11 HOH HOH . F 6 HOH A 12 612 12 HOH HOH . F 6 HOH A 13 613 13 HOH HOH . F 6 HOH A 14 614 14 HOH HOH . F 6 HOH A 15 615 15 HOH HOH . F 6 HOH A 16 616 16 HOH HOH . F 6 HOH A 17 617 17 HOH HOH . F 6 HOH A 18 618 18 HOH HOH . F 6 HOH A 19 619 19 HOH HOH . F 6 HOH A 20 620 20 HOH HOH . F 6 HOH A 21 621 21 HOH HOH . F 6 HOH A 22 622 22 HOH HOH . F 6 HOH A 23 623 23 HOH HOH . F 6 HOH A 24 624 24 HOH HOH . F 6 HOH A 25 625 25 HOH HOH . F 6 HOH A 26 626 26 HOH HOH . F 6 HOH A 27 627 27 HOH HOH . F 6 HOH A 28 628 28 HOH HOH . F 6 HOH A 29 629 29 HOH HOH . F 6 HOH A 30 630 30 HOH HOH . F 6 HOH A 31 631 31 HOH HOH . F 6 HOH A 32 632 32 HOH HOH . F 6 HOH A 33 633 33 HOH HOH . F 6 HOH A 34 634 34 HOH HOH . F 6 HOH A 35 635 35 HOH HOH . F 6 HOH A 36 636 36 HOH HOH . F 6 HOH A 37 637 37 HOH HOH . F 6 HOH A 38 638 38 HOH HOH . F 6 HOH A 39 639 39 HOH HOH . F 6 HOH A 40 640 40 HOH HOH . F 6 HOH A 41 641 41 HOH HOH . F 6 HOH A 42 642 42 HOH HOH . F 6 HOH A 43 643 43 HOH HOH . F 6 HOH A 44 644 44 HOH HOH . F 6 HOH A 45 645 45 HOH HOH . F 6 HOH A 46 646 46 HOH HOH . F 6 HOH A 47 647 47 HOH HOH . F 6 HOH A 48 648 48 HOH HOH . F 6 HOH A 49 649 49 HOH HOH . F 6 HOH A 50 650 50 HOH HOH . F 6 HOH A 51 651 51 HOH HOH . F 6 HOH A 52 652 52 HOH HOH . F 6 HOH A 53 653 53 HOH HOH . F 6 HOH A 54 654 54 HOH HOH . F 6 HOH A 55 655 55 HOH HOH . F 6 HOH A 56 656 56 HOH HOH . F 6 HOH A 57 657 57 HOH HOH . F 6 HOH A 58 658 58 HOH HOH . F 6 HOH A 59 659 59 HOH HOH . F 6 HOH A 60 660 60 HOH HOH . F 6 HOH A 61 661 61 HOH HOH . F 6 HOH A 62 662 63 HOH HOH . F 6 HOH A 63 663 64 HOH HOH . F 6 HOH A 64 664 65 HOH HOH . F 6 HOH A 65 665 66 HOH HOH . F 6 HOH A 66 666 67 HOH HOH . F 6 HOH A 67 667 68 HOH HOH . F 6 HOH A 68 668 69 HOH HOH . F 6 HOH A 69 669 70 HOH HOH . F 6 HOH A 70 670 71 HOH HOH . F 6 HOH A 71 671 72 HOH HOH . F 6 HOH A 72 672 73 HOH HOH . F 6 HOH A 73 673 74 HOH HOH . F 6 HOH A 74 674 75 HOH HOH . F 6 HOH A 75 675 76 HOH HOH . F 6 HOH A 76 676 77 HOH HOH . F 6 HOH A 77 677 78 HOH HOH . F 6 HOH A 78 678 79 HOH HOH . F 6 HOH A 79 679 80 HOH HOH . F 6 HOH A 80 680 81 HOH HOH . F 6 HOH A 81 681 82 HOH HOH . F 6 HOH A 82 682 83 HOH HOH . F 6 HOH A 83 683 84 HOH HOH . F 6 HOH A 84 684 85 HOH HOH . F 6 HOH A 85 685 86 HOH HOH . F 6 HOH A 86 686 87 HOH HOH . F 6 HOH A 87 687 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . B 2 23.213 3.208 66.365 1 39.85 ? C1 GLC 501 A 1 HETATM 2 C C2 GLC . . . B 2 23.299 4.412 65.435 1 40.97 ? C2 GLC 501 A 1 HETATM 3 C C3 GLC . . . B 2 24.736 4.963 65.234 1 39.76 ? C3 GLC 501 A 1 HETATM 4 C C4 GLC . . . B 2 25.405 5.13 66.612 1 38.61 ? C4 GLC 501 A 1 HETATM 5 C C5 GLC . . . B 2 25.386 3.798 67.428 1 37.97 ? C5 GLC 501 A 1 HETATM 6 C C6 GLC . . . B 2 25.976 3.835 68.837 1 38.99 ? C6 GLC 501 A 1 HETATM 7 O O1 GLC . . . B 2 23.818 2.136 65.687 1 40.64 ? O1 GLC 501 A 1 HETATM 8 O O2 GLC . . . B 2 22.638 4.078 64.218 1 43.49 ? O2 GLC 501 A 1 HETATM 9 O O3 GLC . . . B 2 24.64 6.286 64.705 1 42.59 ? O3 GLC 501 A 1 HETATM 10 O O4 GLC . . . B 2 26.732 5.536 66.429 1 37.7 ? O4 GLC 501 A 1 HETATM 11 O O5 GLC . . . B 2 24.029 3.358 67.532 1 39.24 ? O5 GLC 501 A 1 HETATM 12 O O6 GLC . . . B 2 25.316 4.899 69.49 1 43.11 ? O6 GLC 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #