data_3VEY
#
_model_server_result.job_id            gCa-hYBxpqr8KTOvmgHCyA 
_model_server_result.datetime_utc      '2024-10-13 00:25:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vey 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    3VEY 
#
_exptl.entry_id    3VEY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3VEY 
_cell.length_a            80.387 
_cell.length_b            80.387 
_cell.length_c            324.334 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VEY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O MET 228 A MET 238 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc2 A O VAL 231 A VAL 241 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? 
metalc ? metalc3 A O VAL 234 A VAL 244 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc4 A O GLY 236 A GLY 246 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3VEY 
_atom_sites.fract_transf_matrix[1][1]    0.01244 
_atom_sites.fract_transf_matrix[1][2]    0.007182 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014364 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003083 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GLC A 1 501 500 GLC GLC . 
C 3 NA A 1 502 600 NA NA . 
D 4 AGS A 1 503 604 AGS AGS . 
E 5 0H5 A 1 504 501 0H5 0H5 . 
F 6 HOH A 1 601 1 HOH HOH . 
F 6 HOH A 2 602 2 HOH HOH . 
F 6 HOH A 3 603 3 HOH HOH . 
F 6 HOH A 4 604 4 HOH HOH . 
F 6 HOH A 5 605 5 HOH HOH . 
F 6 HOH A 6 606 6 HOH HOH . 
F 6 HOH A 7 607 7 HOH HOH . 
F 6 HOH A 8 608 8 HOH HOH . 
F 6 HOH A 9 609 9 HOH HOH . 
F 6 HOH A 10 610 10 HOH HOH . 
F 6 HOH A 11 611 11 HOH HOH . 
F 6 HOH A 12 612 12 HOH HOH . 
F 6 HOH A 13 613 13 HOH HOH . 
F 6 HOH A 14 614 14 HOH HOH . 
F 6 HOH A 15 615 15 HOH HOH . 
F 6 HOH A 16 616 16 HOH HOH . 
F 6 HOH A 17 617 17 HOH HOH . 
F 6 HOH A 18 618 18 HOH HOH . 
F 6 HOH A 19 619 19 HOH HOH . 
F 6 HOH A 20 620 20 HOH HOH . 
F 6 HOH A 21 621 21 HOH HOH . 
F 6 HOH A 22 622 22 HOH HOH . 
F 6 HOH A 23 623 23 HOH HOH . 
F 6 HOH A 24 624 24 HOH HOH . 
F 6 HOH A 25 625 25 HOH HOH . 
F 6 HOH A 26 626 26 HOH HOH . 
F 6 HOH A 27 627 27 HOH HOH . 
F 6 HOH A 28 628 28 HOH HOH . 
F 6 HOH A 29 629 29 HOH HOH . 
F 6 HOH A 30 630 30 HOH HOH . 
F 6 HOH A 31 631 31 HOH HOH . 
F 6 HOH A 32 632 32 HOH HOH . 
F 6 HOH A 33 633 33 HOH HOH . 
F 6 HOH A 34 634 34 HOH HOH . 
F 6 HOH A 35 635 35 HOH HOH . 
F 6 HOH A 36 636 36 HOH HOH . 
F 6 HOH A 37 637 37 HOH HOH . 
F 6 HOH A 38 638 38 HOH HOH . 
F 6 HOH A 39 639 39 HOH HOH . 
F 6 HOH A 40 640 40 HOH HOH . 
F 6 HOH A 41 641 41 HOH HOH . 
F 6 HOH A 42 642 42 HOH HOH . 
F 6 HOH A 43 643 43 HOH HOH . 
F 6 HOH A 44 644 44 HOH HOH . 
F 6 HOH A 45 645 45 HOH HOH . 
F 6 HOH A 46 646 46 HOH HOH . 
F 6 HOH A 47 647 47 HOH HOH . 
F 6 HOH A 48 648 48 HOH HOH . 
F 6 HOH A 49 649 49 HOH HOH . 
F 6 HOH A 50 650 50 HOH HOH . 
F 6 HOH A 51 651 51 HOH HOH . 
F 6 HOH A 52 652 52 HOH HOH . 
F 6 HOH A 53 653 53 HOH HOH . 
F 6 HOH A 54 654 54 HOH HOH . 
F 6 HOH A 55 655 55 HOH HOH . 
F 6 HOH A 56 656 56 HOH HOH . 
F 6 HOH A 57 657 57 HOH HOH . 
F 6 HOH A 58 658 58 HOH HOH . 
F 6 HOH A 59 659 59 HOH HOH . 
F 6 HOH A 60 660 60 HOH HOH . 
F 6 HOH A 61 661 61 HOH HOH . 
F 6 HOH A 62 662 63 HOH HOH . 
F 6 HOH A 63 663 64 HOH HOH . 
F 6 HOH A 64 664 65 HOH HOH . 
F 6 HOH A 65 665 66 HOH HOH . 
F 6 HOH A 66 666 67 HOH HOH . 
F 6 HOH A 67 667 68 HOH HOH . 
F 6 HOH A 68 668 69 HOH HOH . 
F 6 HOH A 69 669 70 HOH HOH . 
F 6 HOH A 70 670 71 HOH HOH . 
F 6 HOH A 71 671 72 HOH HOH . 
F 6 HOH A 72 672 73 HOH HOH . 
F 6 HOH A 73 673 74 HOH HOH . 
F 6 HOH A 74 674 75 HOH HOH . 
F 6 HOH A 75 675 76 HOH HOH . 
F 6 HOH A 76 676 77 HOH HOH . 
F 6 HOH A 77 677 78 HOH HOH . 
F 6 HOH A 78 678 79 HOH HOH . 
F 6 HOH A 79 679 80 HOH HOH . 
F 6 HOH A 80 680 81 HOH HOH . 
F 6 HOH A 81 681 82 HOH HOH . 
F 6 HOH A 82 682 83 HOH HOH . 
F 6 HOH A 83 683 84 HOH HOH . 
F 6 HOH A 84 684 85 HOH HOH . 
F 6 HOH A 85 685 86 HOH HOH . 
F 6 HOH A 86 686 87 HOH HOH . 
F 6 HOH A 87 687 88 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               37.008 
_atom_site.Cartn_y               11.744 
_atom_site.Cartn_z               46.57 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        61.99 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#