data_3VF6 # _model_server_result.job_id oACr9tEWbue1lyUddngtnA _model_server_result.datetime_utc '2024-11-26 11:08:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3VF6 # _exptl.entry_id 3VF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VF6 _cell.length_a 66.85 _cell.length_b 82.23 _cell.length_c 86.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 243 A MET 238 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc2 A O VAL 246 A VAL 241 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A O VAL 249 A VAL 244 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc4 A O GLY 251 A GLY 246 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc5 D NA NA . A NA 503 1_555 E O HOH . A HOH 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 132 n n C1 O1 GLC sing 133 n n C1 O5 GLC sing 134 n n C1 H1 GLC sing 135 n n C2 C3 GLC sing 136 n n C2 O2 GLC sing 137 n n C2 H2 GLC sing 138 n n C3 C4 GLC sing 139 n n C3 O3 GLC sing 140 n n C3 H3 GLC sing 141 n n C4 C5 GLC sing 142 n n C4 O4 GLC sing 143 n n C4 H4 GLC sing 144 n n C5 C6 GLC sing 145 n n C5 O5 GLC sing 146 n n C5 H5 GLC sing 147 n n C6 O6 GLC sing 148 n n C6 H61 GLC sing 149 n n C6 H62 GLC sing 150 n n O1 HO1 GLC sing 151 n n O2 HO2 GLC sing 152 n n O3 HO3 GLC sing 153 n n O4 HO4 GLC sing 154 n n O6 HO6 GLC sing 155 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3VF6 _atom_sites.fract_transf_matrix[1][1] 0.014959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 501 500 GLC GLC . C 3 0H6 A 1 502 4000 0H6 0H6 . D 4 NA A 1 503 1 NA NA . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . E 5 HOH A 3 603 3 HOH HOH . E 5 HOH A 4 604 4 HOH HOH . E 5 HOH A 5 605 5 HOH HOH . E 5 HOH A 6 606 6 HOH HOH . E 5 HOH A 7 607 7 HOH HOH . E 5 HOH A 8 608 8 HOH HOH . E 5 HOH A 9 609 9 HOH HOH . E 5 HOH A 10 610 10 HOH HOH . E 5 HOH A 11 611 11 HOH HOH . E 5 HOH A 12 612 12 HOH HOH . E 5 HOH A 13 613 13 HOH HOH . E 5 HOH A 14 614 14 HOH HOH . E 5 HOH A 15 615 15 HOH HOH . E 5 HOH A 16 616 17 HOH HOH . E 5 HOH A 17 617 18 HOH HOH . E 5 HOH A 18 618 19 HOH HOH . E 5 HOH A 19 619 20 HOH HOH . E 5 HOH A 20 620 21 HOH HOH . E 5 HOH A 21 621 22 HOH HOH . E 5 HOH A 22 622 23 HOH HOH . E 5 HOH A 23 623 24 HOH HOH . E 5 HOH A 24 624 25 HOH HOH . E 5 HOH A 25 625 26 HOH HOH . E 5 HOH A 26 626 27 HOH HOH . E 5 HOH A 27 627 28 HOH HOH . E 5 HOH A 28 628 29 HOH HOH . E 5 HOH A 29 629 30 HOH HOH . E 5 HOH A 30 630 31 HOH HOH . E 5 HOH A 31 631 32 HOH HOH . E 5 HOH A 32 632 33 HOH HOH . E 5 HOH A 33 633 34 HOH HOH . E 5 HOH A 34 634 35 HOH HOH . E 5 HOH A 35 635 36 HOH HOH . E 5 HOH A 36 636 37 HOH HOH . E 5 HOH A 37 637 38 HOH HOH . E 5 HOH A 38 638 39 HOH HOH . E 5 HOH A 39 639 40 HOH HOH . E 5 HOH A 40 640 41 HOH HOH . E 5 HOH A 41 641 42 HOH HOH . E 5 HOH A 42 642 43 HOH HOH . E 5 HOH A 43 643 44 HOH HOH . E 5 HOH A 44 644 45 HOH HOH . E 5 HOH A 45 645 46 HOH HOH . E 5 HOH A 46 646 47 HOH HOH . E 5 HOH A 47 647 48 HOH HOH . E 5 HOH A 48 648 49 HOH HOH . E 5 HOH A 49 649 50 HOH HOH . E 5 HOH A 50 650 51 HOH HOH . E 5 HOH A 51 651 52 HOH HOH . E 5 HOH A 52 652 53 HOH HOH . E 5 HOH A 53 653 54 HOH HOH . E 5 HOH A 54 654 55 HOH HOH . E 5 HOH A 55 655 56 HOH HOH . E 5 HOH A 56 656 57 HOH HOH . E 5 HOH A 57 657 58 HOH HOH . E 5 HOH A 58 658 59 HOH HOH . E 5 HOH A 59 659 60 HOH HOH . E 5 HOH A 60 660 61 HOH HOH . E 5 HOH A 61 661 62 HOH HOH . E 5 HOH A 62 662 63 HOH HOH . E 5 HOH A 63 663 64 HOH HOH . E 5 HOH A 64 664 65 HOH HOH . E 5 HOH A 65 665 66 HOH HOH . E 5 HOH A 66 666 67 HOH HOH . E 5 HOH A 67 667 68 HOH HOH . E 5 HOH A 68 668 69 HOH HOH . E 5 HOH A 69 669 70 HOH HOH . E 5 HOH A 70 670 71 HOH HOH . E 5 HOH A 71 671 72 HOH HOH . E 5 HOH A 72 672 73 HOH HOH . E 5 HOH A 73 673 74 HOH HOH . E 5 HOH A 74 674 75 HOH HOH . E 5 HOH A 75 675 76 HOH HOH . E 5 HOH A 76 676 77 HOH HOH . E 5 HOH A 77 677 78 HOH HOH . E 5 HOH A 78 678 79 HOH HOH . E 5 HOH A 79 679 80 HOH HOH . E 5 HOH A 80 680 81 HOH HOH . E 5 HOH A 81 681 82 HOH HOH . E 5 HOH A 82 682 83 HOH HOH . E 5 HOH A 83 683 84 HOH HOH . E 5 HOH A 84 684 85 HOH HOH . E 5 HOH A 85 685 86 HOH HOH . E 5 HOH A 86 686 87 HOH HOH . E 5 HOH A 87 687 88 HOH HOH . E 5 HOH A 88 688 89 HOH HOH . E 5 HOH A 89 689 90 HOH HOH . E 5 HOH A 90 690 91 HOH HOH . E 5 HOH A 91 691 92 HOH HOH . E 5 HOH A 92 692 93 HOH HOH . E 5 HOH A 93 693 94 HOH HOH . E 5 HOH A 94 694 95 HOH HOH . E 5 HOH A 95 695 96 HOH HOH . E 5 HOH A 96 696 97 HOH HOH . E 5 HOH A 97 697 98 HOH HOH . E 5 HOH A 98 698 99 HOH HOH . E 5 HOH A 99 699 100 HOH HOH . E 5 HOH A 100 700 101 HOH HOH . E 5 HOH A 101 701 102 HOH HOH . E 5 HOH A 102 702 103 HOH HOH . E 5 HOH A 103 703 104 HOH HOH . E 5 HOH A 104 704 105 HOH HOH . E 5 HOH A 105 705 106 HOH HOH . E 5 HOH A 106 706 107 HOH HOH . E 5 HOH A 107 707 108 HOH HOH . E 5 HOH A 108 708 109 HOH HOH . E 5 HOH A 109 709 110 HOH HOH . E 5 HOH A 110 710 111 HOH HOH . E 5 HOH A 111 711 112 HOH HOH . E 5 HOH A 112 712 113 HOH HOH . E 5 HOH A 113 713 114 HOH HOH . E 5 HOH A 114 714 115 HOH HOH . E 5 HOH A 115 715 116 HOH HOH . E 5 HOH A 116 716 117 HOH HOH . E 5 HOH A 117 717 118 HOH HOH . E 5 HOH A 118 718 119 HOH HOH . E 5 HOH A 119 719 120 HOH HOH . E 5 HOH A 120 720 121 HOH HOH . E 5 HOH A 121 721 122 HOH HOH . E 5 HOH A 122 722 123 HOH HOH . E 5 HOH A 123 723 124 HOH HOH . E 5 HOH A 124 724 125 HOH HOH . E 5 HOH A 125 725 126 HOH HOH . E 5 HOH A 126 726 127 HOH HOH . E 5 HOH A 127 727 128 HOH HOH . E 5 HOH A 128 728 129 HOH HOH . E 5 HOH A 129 729 130 HOH HOH . E 5 HOH A 130 730 131 HOH HOH . E 5 HOH A 131 731 132 HOH HOH . E 5 HOH A 132 732 133 HOH HOH . E 5 HOH A 133 733 134 HOH HOH . E 5 HOH A 134 734 135 HOH HOH . E 5 HOH A 135 735 136 HOH HOH . E 5 HOH A 136 736 137 HOH HOH . E 5 HOH A 137 737 138 HOH HOH . E 5 HOH A 138 738 139 HOH HOH . E 5 HOH A 139 739 140 HOH HOH . E 5 HOH A 140 740 141 HOH HOH . E 5 HOH A 141 741 142 HOH HOH . E 5 HOH A 142 742 143 HOH HOH . E 5 HOH A 143 743 144 HOH HOH . E 5 HOH A 144 744 145 HOH HOH . E 5 HOH A 145 745 146 HOH HOH . E 5 HOH A 146 746 147 HOH HOH . E 5 HOH A 147 747 148 HOH HOH . E 5 HOH A 148 748 149 HOH HOH . E 5 HOH A 149 749 150 HOH HOH . E 5 HOH A 150 750 151 HOH HOH . E 5 HOH A 151 751 152 HOH HOH . E 5 HOH A 152 752 153 HOH HOH . E 5 HOH A 153 753 154 HOH HOH . E 5 HOH A 154 754 155 HOH HOH . E 5 HOH A 155 755 156 HOH HOH . E 5 HOH A 156 756 157 HOH HOH . E 5 HOH A 157 757 158 HOH HOH . E 5 HOH A 158 758 159 HOH HOH . E 5 HOH A 159 759 160 HOH HOH . E 5 HOH A 160 760 161 HOH HOH . E 5 HOH A 161 761 162 HOH HOH . E 5 HOH A 162 762 163 HOH HOH . E 5 HOH A 163 763 164 HOH HOH . E 5 HOH A 164 764 165 HOH HOH . E 5 HOH A 165 765 166 HOH HOH . E 5 HOH A 166 766 167 HOH HOH . E 5 HOH A 167 767 168 HOH HOH . E 5 HOH A 168 768 169 HOH HOH . E 5 HOH A 169 769 170 HOH HOH . E 5 HOH A 170 770 171 HOH HOH . E 5 HOH A 171 771 172 HOH HOH . E 5 HOH A 172 772 173 HOH HOH . E 5 HOH A 173 773 174 HOH HOH . E 5 HOH A 174 774 175 HOH HOH . E 5 HOH A 175 775 177 HOH HOH . E 5 HOH A 176 776 178 HOH HOH . E 5 HOH A 177 777 179 HOH HOH . E 5 HOH A 178 778 180 HOH HOH . E 5 HOH A 179 779 181 HOH HOH . E 5 HOH A 180 780 182 HOH HOH . E 5 HOH A 181 781 183 HOH HOH . E 5 HOH A 182 782 184 HOH HOH . E 5 HOH A 183 783 185 HOH HOH . E 5 HOH A 184 784 186 HOH HOH . E 5 HOH A 185 785 187 HOH HOH . E 5 HOH A 186 786 188 HOH HOH . E 5 HOH A 187 787 189 HOH HOH . E 5 HOH A 188 788 190 HOH HOH . E 5 HOH A 189 789 191 HOH HOH . E 5 HOH A 190 790 192 HOH HOH . E 5 HOH A 191 791 193 HOH HOH . E 5 HOH A 192 792 194 HOH HOH . E 5 HOH A 193 793 195 HOH HOH . E 5 HOH A 194 794 196 HOH HOH . E 5 HOH A 195 795 197 HOH HOH . E 5 HOH A 196 796 198 HOH HOH . E 5 HOH A 197 797 199 HOH HOH . E 5 HOH A 198 798 200 HOH HOH . E 5 HOH A 199 799 201 HOH HOH . E 5 HOH A 200 800 202 HOH HOH . E 5 HOH A 201 801 203 HOH HOH . E 5 HOH A 202 802 204 HOH HOH . E 5 HOH A 203 803 205 HOH HOH . E 5 HOH A 204 804 206 HOH HOH . E 5 HOH A 205 805 207 HOH HOH . E 5 HOH A 206 806 208 HOH HOH . E 5 HOH A 207 807 209 HOH HOH . E 5 HOH A 208 808 210 HOH HOH . E 5 HOH A 209 809 211 HOH HOH . E 5 HOH A 210 810 212 HOH HOH . E 5 HOH A 211 811 213 HOH HOH . E 5 HOH A 212 812 214 HOH HOH . E 5 HOH A 213 813 215 HOH HOH . E 5 HOH A 214 814 216 HOH HOH . E 5 HOH A 215 815 217 HOH HOH . E 5 HOH A 216 816 218 HOH HOH . E 5 HOH A 217 817 219 HOH HOH . E 5 HOH A 218 818 220 HOH HOH . E 5 HOH A 219 819 221 HOH HOH . E 5 HOH A 220 820 222 HOH HOH . E 5 HOH A 221 821 223 HOH HOH . E 5 HOH A 222 822 224 HOH HOH . E 5 HOH A 223 823 225 HOH HOH . E 5 HOH A 224 824 226 HOH HOH . E 5 HOH A 225 825 227 HOH HOH . E 5 HOH A 226 826 228 HOH HOH . E 5 HOH A 227 827 229 HOH HOH . E 5 HOH A 228 828 230 HOH HOH . E 5 HOH A 229 829 231 HOH HOH . E 5 HOH A 230 830 232 HOH HOH . E 5 HOH A 231 831 233 HOH HOH . E 5 HOH A 232 832 234 HOH HOH . E 5 HOH A 233 833 235 HOH HOH . E 5 HOH A 234 834 236 HOH HOH . E 5 HOH A 235 835 237 HOH HOH . E 5 HOH A 236 836 238 HOH HOH . E 5 HOH A 237 837 239 HOH HOH . E 5 HOH A 238 838 240 HOH HOH . E 5 HOH A 239 839 241 HOH HOH . E 5 HOH A 240 840 242 HOH HOH . E 5 HOH A 241 841 243 HOH HOH . E 5 HOH A 242 842 244 HOH HOH . E 5 HOH A 243 843 245 HOH HOH . E 5 HOH A 244 844 246 HOH HOH . E 5 HOH A 245 845 247 HOH HOH . E 5 HOH A 246 846 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . B 2 -27.829 -5.634 11.97 1 14.38 ? C1 GLC 501 A 1 HETATM 2 C C2 GLC . . . B 2 -26.845 -6.356 12.894 1 14.03 ? C2 GLC 501 A 1 HETATM 3 C C3 GLC . . . B 2 -25.858 -5.384 13.532 1 13.37 ? C3 GLC 501 A 1 HETATM 4 C C4 GLC . . . B 2 -25.207 -4.487 12.48 1 12.3 ? C4 GLC 501 A 1 HETATM 5 C C5 GLC . . . B 2 -26.269 -3.832 11.597 1 13.45 ? C5 GLC 501 A 1 HETATM 6 C C6 GLC . . . B 2 -25.69 -3.023 10.457 1 11.31 ? C6 GLC 501 A 1 HETATM 7 O O1 GLC . . . B 2 -28.611 -4.777 12.755 1 17.37 ? O1 GLC 501 A 1 HETATM 8 O O2 GLC . . . B 2 -27.568 -7.076 13.885 1 12.72 ? O2 GLC 501 A 1 HETATM 9 O O3 GLC . . . B 2 -24.86 -6.108 14.255 1 14.66 ? O3 GLC 501 A 1 HETATM 10 O O4 GLC . . . B 2 -24.419 -3.474 13.104 1 13.49 ? O4 GLC 501 A 1 HETATM 11 O O5 GLC . . . B 2 -27.115 -4.841 11.011 1 14.06 ? O5 GLC 501 A 1 HETATM 12 O O6 GLC . . . B 2 -24.876 -3.826 9.614 1 12.4 ? O6 GLC 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 525 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #