data_3VF6
#
_model_server_result.job_id            H2CnWAxuOkxc0Th52qokhQ 
_model_server_result.datetime_utc      '2024-11-22 22:55:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    3VF6 
#
_exptl.entry_id    3VF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VF6 
_cell.length_a            66.85 
_cell.length_b            82.23 
_cell.length_c            86.14 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O MET 243 A MET 238 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc2 A O VAL 246 A VAL 241 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc3 A O VAL 249 A VAL 244 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc4 A O GLY 251 A GLY 246 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc5 D NA NA . A NA 503 1_555 E O HOH . A HOH 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3VF6 
_atom_sites.fract_transf_matrix[1][1]    0.014959 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012161 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011609 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GLC A 1 501 500 GLC GLC . 
C 3 0H6 A 1 502 4000 0H6 0H6 . 
D 4 NA A 1 503 1 NA NA . 
E 5 HOH A 1 601 1 HOH HOH . 
E 5 HOH A 2 602 2 HOH HOH . 
E 5 HOH A 3 603 3 HOH HOH . 
E 5 HOH A 4 604 4 HOH HOH . 
E 5 HOH A 5 605 5 HOH HOH . 
E 5 HOH A 6 606 6 HOH HOH . 
E 5 HOH A 7 607 7 HOH HOH . 
E 5 HOH A 8 608 8 HOH HOH . 
E 5 HOH A 9 609 9 HOH HOH . 
E 5 HOH A 10 610 10 HOH HOH . 
E 5 HOH A 11 611 11 HOH HOH . 
E 5 HOH A 12 612 12 HOH HOH . 
E 5 HOH A 13 613 13 HOH HOH . 
E 5 HOH A 14 614 14 HOH HOH . 
E 5 HOH A 15 615 15 HOH HOH . 
E 5 HOH A 16 616 17 HOH HOH . 
E 5 HOH A 17 617 18 HOH HOH . 
E 5 HOH A 18 618 19 HOH HOH . 
E 5 HOH A 19 619 20 HOH HOH . 
E 5 HOH A 20 620 21 HOH HOH . 
E 5 HOH A 21 621 22 HOH HOH . 
E 5 HOH A 22 622 23 HOH HOH . 
E 5 HOH A 23 623 24 HOH HOH . 
E 5 HOH A 24 624 25 HOH HOH . 
E 5 HOH A 25 625 26 HOH HOH . 
E 5 HOH A 26 626 27 HOH HOH . 
E 5 HOH A 27 627 28 HOH HOH . 
E 5 HOH A 28 628 29 HOH HOH . 
E 5 HOH A 29 629 30 HOH HOH . 
E 5 HOH A 30 630 31 HOH HOH . 
E 5 HOH A 31 631 32 HOH HOH . 
E 5 HOH A 32 632 33 HOH HOH . 
E 5 HOH A 33 633 34 HOH HOH . 
E 5 HOH A 34 634 35 HOH HOH . 
E 5 HOH A 35 635 36 HOH HOH . 
E 5 HOH A 36 636 37 HOH HOH . 
E 5 HOH A 37 637 38 HOH HOH . 
E 5 HOH A 38 638 39 HOH HOH . 
E 5 HOH A 39 639 40 HOH HOH . 
E 5 HOH A 40 640 41 HOH HOH . 
E 5 HOH A 41 641 42 HOH HOH . 
E 5 HOH A 42 642 43 HOH HOH . 
E 5 HOH A 43 643 44 HOH HOH . 
E 5 HOH A 44 644 45 HOH HOH . 
E 5 HOH A 45 645 46 HOH HOH . 
E 5 HOH A 46 646 47 HOH HOH . 
E 5 HOH A 47 647 48 HOH HOH . 
E 5 HOH A 48 648 49 HOH HOH . 
E 5 HOH A 49 649 50 HOH HOH . 
E 5 HOH A 50 650 51 HOH HOH . 
E 5 HOH A 51 651 52 HOH HOH . 
E 5 HOH A 52 652 53 HOH HOH . 
E 5 HOH A 53 653 54 HOH HOH . 
E 5 HOH A 54 654 55 HOH HOH . 
E 5 HOH A 55 655 56 HOH HOH . 
E 5 HOH A 56 656 57 HOH HOH . 
E 5 HOH A 57 657 58 HOH HOH . 
E 5 HOH A 58 658 59 HOH HOH . 
E 5 HOH A 59 659 60 HOH HOH . 
E 5 HOH A 60 660 61 HOH HOH . 
E 5 HOH A 61 661 62 HOH HOH . 
E 5 HOH A 62 662 63 HOH HOH . 
E 5 HOH A 63 663 64 HOH HOH . 
E 5 HOH A 64 664 65 HOH HOH . 
E 5 HOH A 65 665 66 HOH HOH . 
E 5 HOH A 66 666 67 HOH HOH . 
E 5 HOH A 67 667 68 HOH HOH . 
E 5 HOH A 68 668 69 HOH HOH . 
E 5 HOH A 69 669 70 HOH HOH . 
E 5 HOH A 70 670 71 HOH HOH . 
E 5 HOH A 71 671 72 HOH HOH . 
E 5 HOH A 72 672 73 HOH HOH . 
E 5 HOH A 73 673 74 HOH HOH . 
E 5 HOH A 74 674 75 HOH HOH . 
E 5 HOH A 75 675 76 HOH HOH . 
E 5 HOH A 76 676 77 HOH HOH . 
E 5 HOH A 77 677 78 HOH HOH . 
E 5 HOH A 78 678 79 HOH HOH . 
E 5 HOH A 79 679 80 HOH HOH . 
E 5 HOH A 80 680 81 HOH HOH . 
E 5 HOH A 81 681 82 HOH HOH . 
E 5 HOH A 82 682 83 HOH HOH . 
E 5 HOH A 83 683 84 HOH HOH . 
E 5 HOH A 84 684 85 HOH HOH . 
E 5 HOH A 85 685 86 HOH HOH . 
E 5 HOH A 86 686 87 HOH HOH . 
E 5 HOH A 87 687 88 HOH HOH . 
E 5 HOH A 88 688 89 HOH HOH . 
E 5 HOH A 89 689 90 HOH HOH . 
E 5 HOH A 90 690 91 HOH HOH . 
E 5 HOH A 91 691 92 HOH HOH . 
E 5 HOH A 92 692 93 HOH HOH . 
E 5 HOH A 93 693 94 HOH HOH . 
E 5 HOH A 94 694 95 HOH HOH . 
E 5 HOH A 95 695 96 HOH HOH . 
E 5 HOH A 96 696 97 HOH HOH . 
E 5 HOH A 97 697 98 HOH HOH . 
E 5 HOH A 98 698 99 HOH HOH . 
E 5 HOH A 99 699 100 HOH HOH . 
E 5 HOH A 100 700 101 HOH HOH . 
E 5 HOH A 101 701 102 HOH HOH . 
E 5 HOH A 102 702 103 HOH HOH . 
E 5 HOH A 103 703 104 HOH HOH . 
E 5 HOH A 104 704 105 HOH HOH . 
E 5 HOH A 105 705 106 HOH HOH . 
E 5 HOH A 106 706 107 HOH HOH . 
E 5 HOH A 107 707 108 HOH HOH . 
E 5 HOH A 108 708 109 HOH HOH . 
E 5 HOH A 109 709 110 HOH HOH . 
E 5 HOH A 110 710 111 HOH HOH . 
E 5 HOH A 111 711 112 HOH HOH . 
E 5 HOH A 112 712 113 HOH HOH . 
E 5 HOH A 113 713 114 HOH HOH . 
E 5 HOH A 114 714 115 HOH HOH . 
E 5 HOH A 115 715 116 HOH HOH . 
E 5 HOH A 116 716 117 HOH HOH . 
E 5 HOH A 117 717 118 HOH HOH . 
E 5 HOH A 118 718 119 HOH HOH . 
E 5 HOH A 119 719 120 HOH HOH . 
E 5 HOH A 120 720 121 HOH HOH . 
E 5 HOH A 121 721 122 HOH HOH . 
E 5 HOH A 122 722 123 HOH HOH . 
E 5 HOH A 123 723 124 HOH HOH . 
E 5 HOH A 124 724 125 HOH HOH . 
E 5 HOH A 125 725 126 HOH HOH . 
E 5 HOH A 126 726 127 HOH HOH . 
E 5 HOH A 127 727 128 HOH HOH . 
E 5 HOH A 128 728 129 HOH HOH . 
E 5 HOH A 129 729 130 HOH HOH . 
E 5 HOH A 130 730 131 HOH HOH . 
E 5 HOH A 131 731 132 HOH HOH . 
E 5 HOH A 132 732 133 HOH HOH . 
E 5 HOH A 133 733 134 HOH HOH . 
E 5 HOH A 134 734 135 HOH HOH . 
E 5 HOH A 135 735 136 HOH HOH . 
E 5 HOH A 136 736 137 HOH HOH . 
E 5 HOH A 137 737 138 HOH HOH . 
E 5 HOH A 138 738 139 HOH HOH . 
E 5 HOH A 139 739 140 HOH HOH . 
E 5 HOH A 140 740 141 HOH HOH . 
E 5 HOH A 141 741 142 HOH HOH . 
E 5 HOH A 142 742 143 HOH HOH . 
E 5 HOH A 143 743 144 HOH HOH . 
E 5 HOH A 144 744 145 HOH HOH . 
E 5 HOH A 145 745 146 HOH HOH . 
E 5 HOH A 146 746 147 HOH HOH . 
E 5 HOH A 147 747 148 HOH HOH . 
E 5 HOH A 148 748 149 HOH HOH . 
E 5 HOH A 149 749 150 HOH HOH . 
E 5 HOH A 150 750 151 HOH HOH . 
E 5 HOH A 151 751 152 HOH HOH . 
E 5 HOH A 152 752 153 HOH HOH . 
E 5 HOH A 153 753 154 HOH HOH . 
E 5 HOH A 154 754 155 HOH HOH . 
E 5 HOH A 155 755 156 HOH HOH . 
E 5 HOH A 156 756 157 HOH HOH . 
E 5 HOH A 157 757 158 HOH HOH . 
E 5 HOH A 158 758 159 HOH HOH . 
E 5 HOH A 159 759 160 HOH HOH . 
E 5 HOH A 160 760 161 HOH HOH . 
E 5 HOH A 161 761 162 HOH HOH . 
E 5 HOH A 162 762 163 HOH HOH . 
E 5 HOH A 163 763 164 HOH HOH . 
E 5 HOH A 164 764 165 HOH HOH . 
E 5 HOH A 165 765 166 HOH HOH . 
E 5 HOH A 166 766 167 HOH HOH . 
E 5 HOH A 167 767 168 HOH HOH . 
E 5 HOH A 168 768 169 HOH HOH . 
E 5 HOH A 169 769 170 HOH HOH . 
E 5 HOH A 170 770 171 HOH HOH . 
E 5 HOH A 171 771 172 HOH HOH . 
E 5 HOH A 172 772 173 HOH HOH . 
E 5 HOH A 173 773 174 HOH HOH . 
E 5 HOH A 174 774 175 HOH HOH . 
E 5 HOH A 175 775 177 HOH HOH . 
E 5 HOH A 176 776 178 HOH HOH . 
E 5 HOH A 177 777 179 HOH HOH . 
E 5 HOH A 178 778 180 HOH HOH . 
E 5 HOH A 179 779 181 HOH HOH . 
E 5 HOH A 180 780 182 HOH HOH . 
E 5 HOH A 181 781 183 HOH HOH . 
E 5 HOH A 182 782 184 HOH HOH . 
E 5 HOH A 183 783 185 HOH HOH . 
E 5 HOH A 184 784 186 HOH HOH . 
E 5 HOH A 185 785 187 HOH HOH . 
E 5 HOH A 186 786 188 HOH HOH . 
E 5 HOH A 187 787 189 HOH HOH . 
E 5 HOH A 188 788 190 HOH HOH . 
E 5 HOH A 189 789 191 HOH HOH . 
E 5 HOH A 190 790 192 HOH HOH . 
E 5 HOH A 191 791 193 HOH HOH . 
E 5 HOH A 192 792 194 HOH HOH . 
E 5 HOH A 193 793 195 HOH HOH . 
E 5 HOH A 194 794 196 HOH HOH . 
E 5 HOH A 195 795 197 HOH HOH . 
E 5 HOH A 196 796 198 HOH HOH . 
E 5 HOH A 197 797 199 HOH HOH . 
E 5 HOH A 198 798 200 HOH HOH . 
E 5 HOH A 199 799 201 HOH HOH . 
E 5 HOH A 200 800 202 HOH HOH . 
E 5 HOH A 201 801 203 HOH HOH . 
E 5 HOH A 202 802 204 HOH HOH . 
E 5 HOH A 203 803 205 HOH HOH . 
E 5 HOH A 204 804 206 HOH HOH . 
E 5 HOH A 205 805 207 HOH HOH . 
E 5 HOH A 206 806 208 HOH HOH . 
E 5 HOH A 207 807 209 HOH HOH . 
E 5 HOH A 208 808 210 HOH HOH . 
E 5 HOH A 209 809 211 HOH HOH . 
E 5 HOH A 210 810 212 HOH HOH . 
E 5 HOH A 211 811 213 HOH HOH . 
E 5 HOH A 212 812 214 HOH HOH . 
E 5 HOH A 213 813 215 HOH HOH . 
E 5 HOH A 214 814 216 HOH HOH . 
E 5 HOH A 215 815 217 HOH HOH . 
E 5 HOH A 216 816 218 HOH HOH . 
E 5 HOH A 217 817 219 HOH HOH . 
E 5 HOH A 218 818 220 HOH HOH . 
E 5 HOH A 219 819 221 HOH HOH . 
E 5 HOH A 220 820 222 HOH HOH . 
E 5 HOH A 221 821 223 HOH HOH . 
E 5 HOH A 222 822 224 HOH HOH . 
E 5 HOH A 223 823 225 HOH HOH . 
E 5 HOH A 224 824 226 HOH HOH . 
E 5 HOH A 225 825 227 HOH HOH . 
E 5 HOH A 226 826 228 HOH HOH . 
E 5 HOH A 227 827 229 HOH HOH . 
E 5 HOH A 228 828 230 HOH HOH . 
E 5 HOH A 229 829 231 HOH HOH . 
E 5 HOH A 230 830 232 HOH HOH . 
E 5 HOH A 231 831 233 HOH HOH . 
E 5 HOH A 232 832 234 HOH HOH . 
E 5 HOH A 233 833 235 HOH HOH . 
E 5 HOH A 234 834 236 HOH HOH . 
E 5 HOH A 235 835 237 HOH HOH . 
E 5 HOH A 236 836 238 HOH HOH . 
E 5 HOH A 237 837 239 HOH HOH . 
E 5 HOH A 238 838 240 HOH HOH . 
E 5 HOH A 239 839 241 HOH HOH . 
E 5 HOH A 240 840 242 HOH HOH . 
E 5 HOH A 241 841 243 HOH HOH . 
E 5 HOH A 242 842 244 HOH HOH . 
E 5 HOH A 243 843 245 HOH HOH . 
E 5 HOH A 244 844 246 HOH HOH . 
E 5 HOH A 245 845 247 HOH HOH . 
E 5 HOH A 246 846 248 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -18.484 
_atom_site.Cartn_y               -1.735 
_atom_site.Cartn_z               34.672 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        22.96 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#