data_3VF8 # _model_server_result.job_id gCljn3ATM0H-rwE8xVRR0g _model_server_result.datetime_utc '2024-12-22 02:08:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 3VF8 # _exptl.entry_id 3VF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.386 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[5-(5-ethoxy-6-fluoro-1H-benzimidazol-2-yl)-1H-pyrazol-4-yl]-1,1-diethylurea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VF8 _cell.length_a 39.743 _cell.length_b 84.952 _cell.length_c 89.734 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 F N6 O2' _chem_comp.formula_weight 360.386 _chem_comp.id 0JE _chem_comp.mon_nstd_flag . _chem_comp.name 3-[5-(5-ethoxy-6-fluoro-1H-benzimidazol-2-yl)-1H-pyrazol-4-yl]-1,1-diethylurea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAZ CAY 0JE sing 1 n n NAK NAL 0JE sing 2 n y NAK CAJ 0JE sing 3 n y CAY OAX 0JE sing 4 n n NAL CAM 0JE doub 5 n y NAE CAI 0JE sing 6 n y NAE CAF 0JE doub 7 n y CAC CAI 0JE doub 8 n y CAC CAB 0JE sing 9 n y OAX CAB 0JE sing 10 n n CAI CAH 0JE sing 11 n y CAJ CAF 0JE sing 12 n n CAJ CAN 0JE doub 13 n y CAB CAA 0JE doub 14 n y CAF NAG 0JE sing 15 n y CAM CAN 0JE sing 16 n y CAN NAO 0JE sing 17 n n CAH NAG 0JE sing 18 n y CAH CAD 0JE doub 19 n y CAA CAD 0JE sing 20 n y CAA FAW 0JE sing 21 n n OAR CAP 0JE doub 22 n n NAO CAP 0JE sing 23 n n CAP NAQ 0JE sing 24 n n CAT CAS 0JE sing 25 n n CAV CAU 0JE sing 26 n n NAQ CAS 0JE sing 27 n n NAQ CAU 0JE sing 28 n n CAZ H1 0JE sing 29 n n CAZ H2 0JE sing 30 n n CAZ H3 0JE sing 31 n n CAY H4 0JE sing 32 n n CAY H5 0JE sing 33 n n CAC H6 0JE sing 34 n n CAD H7 0JE sing 35 n n NAG H8 0JE sing 36 n n NAK H10 0JE sing 37 n n CAM H11 0JE sing 38 n n NAO H12 0JE sing 39 n n CAU H13 0JE sing 40 n n CAU H14 0JE sing 41 n n CAV H15 0JE sing 42 n n CAV H16 0JE sing 43 n n CAV H17 0JE sing 44 n n CAS H18 0JE sing 45 n n CAS H19 0JE sing 46 n n CAT H20 0JE sing 47 n n CAT H21 0JE sing 48 n n CAT H22 0JE sing 49 n n # _atom_sites.entry_id 3VF8 _atom_sites.fract_transf_matrix[1][1] 0.025162 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0JE A 1 701 1 0JE 416 . C 3 HOH A 1 801 1 HOH HOH . C 3 HOH A 2 802 2 HOH HOH . C 3 HOH A 3 803 3 HOH HOH . C 3 HOH A 4 804 4 HOH HOH . C 3 HOH A 5 805 5 HOH HOH . C 3 HOH A 6 806 6 HOH HOH . C 3 HOH A 7 807 7 HOH HOH . C 3 HOH A 8 808 8 HOH HOH . C 3 HOH A 9 809 9 HOH HOH . C 3 HOH A 10 810 10 HOH HOH . C 3 HOH A 11 811 11 HOH HOH . C 3 HOH A 12 812 12 HOH HOH . C 3 HOH A 13 813 13 HOH HOH . C 3 HOH A 14 814 14 HOH HOH . C 3 HOH A 15 815 15 HOH HOH . C 3 HOH A 16 816 16 HOH HOH . C 3 HOH A 17 817 17 HOH HOH . C 3 HOH A 18 818 18 HOH HOH . C 3 HOH A 19 819 19 HOH HOH . C 3 HOH A 20 820 20 HOH HOH . C 3 HOH A 21 821 21 HOH HOH . C 3 HOH A 22 822 22 HOH HOH . C 3 HOH A 23 823 23 HOH HOH . C 3 HOH A 24 824 24 HOH HOH . C 3 HOH A 25 825 26 HOH HOH . C 3 HOH A 26 826 27 HOH HOH . C 3 HOH A 27 827 28 HOH HOH . C 3 HOH A 28 828 29 HOH HOH . C 3 HOH A 29 829 30 HOH HOH . C 3 HOH A 30 830 32 HOH HOH . C 3 HOH A 31 831 33 HOH HOH . C 3 HOH A 32 832 34 HOH HOH . C 3 HOH A 33 833 35 HOH HOH . C 3 HOH A 34 834 36 HOH HOH . C 3 HOH A 35 835 37 HOH HOH . C 3 HOH A 36 836 38 HOH HOH . C 3 HOH A 37 837 39 HOH HOH . C 3 HOH A 38 838 40 HOH HOH . C 3 HOH A 39 839 41 HOH HOH . C 3 HOH A 40 840 42 HOH HOH . C 3 HOH A 41 841 43 HOH HOH . C 3 HOH A 42 842 44 HOH HOH . C 3 HOH A 43 843 45 HOH HOH . C 3 HOH A 44 844 46 HOH HOH . C 3 HOH A 45 845 47 HOH HOH . C 3 HOH A 46 846 48 HOH HOH . C 3 HOH A 47 847 49 HOH HOH . C 3 HOH A 48 848 50 HOH HOH . C 3 HOH A 49 849 51 HOH HOH . C 3 HOH A 50 850 52 HOH HOH . C 3 HOH A 51 851 53 HOH HOH . C 3 HOH A 52 852 54 HOH HOH . C 3 HOH A 53 853 55 HOH HOH . C 3 HOH A 54 854 56 HOH HOH . C 3 HOH A 55 855 57 HOH HOH . C 3 HOH A 56 856 58 HOH HOH . C 3 HOH A 57 857 59 HOH HOH . C 3 HOH A 58 858 60 HOH HOH . C 3 HOH A 59 859 61 HOH HOH . C 3 HOH A 60 860 62 HOH HOH . C 3 HOH A 61 861 64 HOH HOH . C 3 HOH A 62 862 65 HOH HOH . C 3 HOH A 63 863 66 HOH HOH . C 3 HOH A 64 864 67 HOH HOH . C 3 HOH A 65 865 68 HOH HOH . C 3 HOH A 66 866 69 HOH HOH . C 3 HOH A 67 867 71 HOH HOH . C 3 HOH A 68 868 72 HOH HOH . C 3 HOH A 69 869 73 HOH HOH . C 3 HOH A 70 870 74 HOH HOH . C 3 HOH A 71 871 76 HOH HOH . C 3 HOH A 72 872 77 HOH HOH . C 3 HOH A 73 873 78 HOH HOH . C 3 HOH A 74 874 79 HOH HOH . C 3 HOH A 75 875 80 HOH HOH . C 3 HOH A 76 876 81 HOH HOH . C 3 HOH A 77 877 84 HOH HOH . C 3 HOH A 78 878 85 HOH HOH . C 3 HOH A 79 879 86 HOH HOH . C 3 HOH A 80 880 88 HOH HOH . C 3 HOH A 81 881 89 HOH HOH . C 3 HOH A 82 882 90 HOH HOH . C 3 HOH A 83 883 91 HOH HOH . C 3 HOH A 84 884 92 HOH HOH . C 3 HOH A 85 885 93 HOH HOH . C 3 HOH A 86 886 94 HOH HOH . C 3 HOH A 87 887 96 HOH HOH . C 3 HOH A 88 888 97 HOH HOH . C 3 HOH A 89 889 98 HOH HOH . C 3 HOH A 90 890 99 HOH HOH . C 3 HOH A 91 891 100 HOH HOH . C 3 HOH A 92 892 101 HOH HOH . C 3 HOH A 93 893 104 HOH HOH . C 3 HOH A 94 894 105 HOH HOH . C 3 HOH A 95 895 106 HOH HOH . C 3 HOH A 96 896 107 HOH HOH . C 3 HOH A 97 897 110 HOH HOH . C 3 HOH A 98 898 111 HOH HOH . C 3 HOH A 99 899 112 HOH HOH . C 3 HOH A 100 900 113 HOH HOH . C 3 HOH A 101 901 114 HOH HOH . C 3 HOH A 102 902 115 HOH HOH . C 3 HOH A 103 903 116 HOH HOH . C 3 HOH A 104 904 117 HOH HOH . C 3 HOH A 105 905 118 HOH HOH . C 3 HOH A 106 906 120 HOH HOH . C 3 HOH A 107 907 126 HOH HOH . C 3 HOH A 108 908 128 HOH HOH . C 3 HOH A 109 909 129 HOH HOH . C 3 HOH A 110 910 130 HOH HOH . C 3 HOH A 111 911 131 HOH HOH . C 3 HOH A 112 912 132 HOH HOH . C 3 HOH A 113 913 133 HOH HOH . C 3 HOH A 114 914 134 HOH HOH . C 3 HOH A 115 915 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAZ 0JE . . . B 2 4.572 -5.006 -16.765 1 62.76 ? CAZ 0JE 701 A 1 HETATM 2 C CAY 0JE . . . B 2 3.222 -4.553 -16.205 1 69.66 ? CAY 0JE 701 A 1 HETATM 3 O OAX 0JE . . . B 2 3.393 -3.197 -15.765 1 35.93 ? OAX 0JE 701 A 1 HETATM 4 C CAB 0JE . . . B 2 2.255 -2.523 -15.421 1 29.15 ? CAB 0JE 701 A 1 HETATM 5 C CAC 0JE . . . B 2 1.02 -2.78 -16.033 1 33.16 ? CAC 0JE 701 A 1 HETATM 6 C CAA 0JE . . . B 2 2.354 -1.514 -14.461 1 35.31 ? CAA 0JE 701 A 1 HETATM 7 F FAW 0JE . . . B 2 3.542 -1.264 -13.874 1 35.26 ? FAW 0JE 701 A 1 HETATM 8 C CAD 0JE . . . B 2 1.231 -0.767 -14.104 1 36.33 ? CAD 0JE 701 A 1 HETATM 9 C CAH 0JE . . . B 2 0.001 -1.036 -14.706 1 28.93 ? CAH 0JE 701 A 1 HETATM 10 N NAG 0JE . . . B 2 -1.206 -0.505 -14.558 1 22.62 ? NAG 0JE 701 A 1 HETATM 11 C CAI 0JE . . . B 2 -0.104 -2.03 -15.674 1 30.09 ? CAI 0JE 701 A 1 HETATM 12 N NAE 0JE . . . B 2 -1.373 -2.045 -16.076 1 27.11 ? NAE 0JE 701 A 1 HETATM 13 C CAF 0JE . . . B 2 -2.047 -1.115 -15.393 1 25.37 ? CAF 0JE 701 A 1 HETATM 14 C CAJ 0JE . . . B 2 -3.403 -0.821 -15.542 1 30.68 ? CAJ 0JE 701 A 1 HETATM 15 N NAK 0JE . . . B 2 -4.312 -1.419 -16.309 1 26.16 ? NAK 0JE 701 A 1 HETATM 16 N NAL 0JE . . . B 2 -5.406 -0.853 -16.172 1 18.43 ? NAL 0JE 701 A 1 HETATM 17 C CAM 0JE . . . B 2 -5.323 0.17 -15.31 1 20.99 ? CAM 0JE 701 A 1 HETATM 18 C CAN 0JE . . . B 2 -4.063 0.205 -14.886 1 28.3 ? CAN 0JE 701 A 1 HETATM 19 N NAO 0JE . . . B 2 -3.479 1.091 -14.062 1 26.08 ? NAO 0JE 701 A 1 HETATM 20 C CAP 0JE . . . B 2 -3.844 2.367 -13.843 1 40.74 ? CAP 0JE 701 A 1 HETATM 21 O OAR 0JE . . . B 2 -4.856 2.866 -14.339 1 29.32 ? OAR 0JE 701 A 1 HETATM 22 N NAQ 0JE . . . B 2 -3.063 3.081 -13.018 1 46.47 ? NAQ 0JE 701 A 1 HETATM 23 C CAU 0JE . . . B 2 -1.847 2.514 -12.407 1 31.32 ? CAU 0JE 701 A 1 HETATM 24 C CAV 0JE . . . B 2 -0.628 2.953 -13.22 1 29.29 ? CAV 0JE 701 A 1 HETATM 25 C CAS 0JE . . . B 2 -3.385 4.48 -12.683 1 41.47 ? CAS 0JE 701 A 1 HETATM 26 C CAT 0JE . . . B 2 -2.933 5.395 -13.824 1 35.33 ? CAT 0JE 701 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #