data_3VFB # _model_server_result.job_id CUVvj5a0JycMSWw01vFCeQ _model_server_result.datetime_utc '2024-11-09 02:15:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 3VFB # _exptl.entry_id 3VFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VFB _cell.length_a 58.255 _cell.length_b 86.386 _cell.length_c 46.068 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ASP 60 B ASP 60 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 H NA NA . B NA 501 1_555 K O HOH . B HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc3 H NA NA . B NA 501 1_555 K O HOH . B HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc4 H NA NA . B NA 501 1_555 K O HOH . B HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc5 H NA NA . B NA 501 1_555 K O HOH . B HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 214 n n C1 C2 GOL sing 215 n n C1 H11 GOL sing 216 n n C1 H12 GOL sing 217 n n O1 HO1 GOL sing 218 n n C2 O2 GOL sing 219 n n C2 C3 GOL sing 220 n n C2 H2 GOL sing 221 n n O2 HO2 GOL sing 222 n n C3 O3 GOL sing 223 n n C3 H31 GOL sing 224 n n C3 H32 GOL sing 225 n n O3 HO3 GOL sing 226 n n # _atom_sites.entry_id 3VFB _atom_sites.fract_transf_matrix[1][1] 0.017166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 031 A 1 201 201 031 031 . D 3 CL A 1 202 511 CL CL . E 4 GOL A 1 203 521 GOL GOL . F 4 GOL A 1 204 522 GOL GOL . G 4 GOL A 1 205 523 GOL GOL . H 5 NA B 1 501 501 NA NA . I 3 CL B 1 502 512 CL CL . J 6 HOH A 1 1001 1001 HOH HOH . J 6 HOH A 2 1002 1002 HOH HOH . J 6 HOH A 3 1003 1006 HOH HOH . J 6 HOH A 4 1004 1007 HOH HOH . J 6 HOH A 5 1005 1009 HOH HOH . J 6 HOH A 6 1006 1012 HOH HOH . J 6 HOH A 7 1007 1014 HOH HOH . J 6 HOH A 8 1008 1015 HOH HOH . J 6 HOH A 9 1009 1016 HOH HOH . J 6 HOH A 10 1010 1017 HOH HOH . J 6 HOH A 11 1011 1020 HOH HOH . J 6 HOH A 12 1012 1022 HOH HOH . J 6 HOH A 13 1013 1023 HOH HOH . J 6 HOH A 14 1014 1024 HOH HOH . J 6 HOH A 15 1015 1026 HOH HOH . J 6 HOH A 16 1016 1028 HOH HOH . J 6 HOH A 17 1017 1029 HOH HOH . J 6 HOH A 18 1018 1032 HOH HOH . J 6 HOH A 19 1019 1035 HOH HOH . J 6 HOH A 20 1020 1037 HOH HOH . J 6 HOH A 21 1021 1038 HOH HOH . J 6 HOH A 22 1022 1039 HOH HOH . J 6 HOH A 23 1023 1040 HOH HOH . J 6 HOH A 24 1024 1041 HOH HOH . J 6 HOH A 25 1025 1043 HOH HOH . J 6 HOH A 26 1026 1046 HOH HOH . J 6 HOH A 27 1027 1047 HOH HOH . J 6 HOH A 28 1028 1048 HOH HOH . J 6 HOH A 29 1029 1049 HOH HOH . J 6 HOH A 30 1030 1050 HOH HOH . J 6 HOH A 31 1031 1051 HOH HOH . J 6 HOH A 32 1032 1052 HOH HOH . J 6 HOH A 33 1033 1054 HOH HOH . J 6 HOH A 34 1034 1055 HOH HOH . J 6 HOH A 35 1035 1056 HOH HOH . J 6 HOH A 36 1036 1057 HOH HOH . J 6 HOH A 37 1037 1059 HOH HOH . J 6 HOH A 38 1038 1063 HOH HOH . J 6 HOH A 39 1039 1064 HOH HOH . J 6 HOH A 40 1040 1065 HOH HOH . J 6 HOH A 41 1041 1066 HOH HOH . J 6 HOH A 42 1042 1069 HOH HOH . J 6 HOH A 43 1043 1073 HOH HOH . J 6 HOH A 44 1044 1078 HOH HOH . J 6 HOH A 45 1045 1080 HOH HOH . J 6 HOH A 46 1046 1081 HOH HOH . J 6 HOH A 47 1047 1085 HOH HOH . J 6 HOH A 48 1048 1086 HOH HOH . J 6 HOH A 49 1049 1087 HOH HOH . J 6 HOH A 50 1050 1089 HOH HOH . J 6 HOH A 51 1051 1092 HOH HOH . J 6 HOH A 52 1052 1094 HOH HOH . J 6 HOH A 53 1053 1095 HOH HOH . J 6 HOH A 54 1054 1097 HOH HOH . J 6 HOH A 55 1055 1099 HOH HOH . J 6 HOH A 56 1056 1100 HOH HOH . J 6 HOH A 57 1057 1101 HOH HOH . J 6 HOH A 58 1058 1103 HOH HOH . J 6 HOH A 59 1059 1120 HOH HOH . J 6 HOH A 60 1060 1121 HOH HOH . J 6 HOH A 61 1061 1124 HOH HOH . J 6 HOH A 62 1062 1125 HOH HOH . J 6 HOH A 63 1063 1126 HOH HOH . J 6 HOH A 64 1064 1127 HOH HOH . J 6 HOH A 65 1065 1128 HOH HOH . J 6 HOH A 66 1066 1129 HOH HOH . J 6 HOH A 67 1067 1130 HOH HOH . J 6 HOH A 68 1068 1133 HOH HOH . J 6 HOH A 69 1069 1134 HOH HOH . J 6 HOH A 70 1070 1136 HOH HOH . J 6 HOH A 71 1071 1138 HOH HOH . J 6 HOH A 72 1072 1139 HOH HOH . J 6 HOH A 73 1073 1142 HOH HOH . J 6 HOH A 74 1074 1143 HOH HOH . J 6 HOH A 75 1075 1144 HOH HOH . J 6 HOH A 76 1076 1148 HOH HOH . J 6 HOH A 77 1077 1149 HOH HOH . J 6 HOH A 78 1078 1152 HOH HOH . J 6 HOH A 79 1079 1171 HOH HOH . J 6 HOH A 80 1080 1172 HOH HOH . J 6 HOH A 81 1081 1173 HOH HOH . J 6 HOH A 82 1082 1178 HOH HOH . J 6 HOH A 83 1083 1182 HOH HOH . J 6 HOH A 84 1084 1183 HOH HOH . J 6 HOH A 85 1085 1184 HOH HOH . K 6 HOH B 1 601 1003 HOH HOH . K 6 HOH B 2 602 1004 HOH HOH . K 6 HOH B 3 603 1005 HOH HOH . K 6 HOH B 4 604 1008 HOH HOH . K 6 HOH B 5 605 1010 HOH HOH . K 6 HOH B 6 606 1011 HOH HOH . K 6 HOH B 7 607 1013 HOH HOH . K 6 HOH B 8 608 1018 HOH HOH . K 6 HOH B 9 609 1019 HOH HOH . K 6 HOH B 10 610 1021 HOH HOH . K 6 HOH B 11 611 1025 HOH HOH . K 6 HOH B 12 612 1027 HOH HOH . K 6 HOH B 13 613 1030 HOH HOH . K 6 HOH B 14 614 1031 HOH HOH . K 6 HOH B 15 615 1033 HOH HOH . K 6 HOH B 16 616 1034 HOH HOH . K 6 HOH B 17 617 1036 HOH HOH . K 6 HOH B 18 618 1042 HOH HOH . K 6 HOH B 19 619 1044 HOH HOH . K 6 HOH B 20 620 1045 HOH HOH . K 6 HOH B 21 621 1053 HOH HOH . K 6 HOH B 22 622 1058 HOH HOH . K 6 HOH B 23 623 1060 HOH HOH . K 6 HOH B 24 624 1061 HOH HOH . K 6 HOH B 25 625 1062 HOH HOH . K 6 HOH B 26 626 1067 HOH HOH . K 6 HOH B 27 627 1068 HOH HOH . K 6 HOH B 28 628 1070 HOH HOH . K 6 HOH B 29 629 1071 HOH HOH . K 6 HOH B 30 630 1072 HOH HOH . K 6 HOH B 31 631 1074 HOH HOH . K 6 HOH B 32 632 1075 HOH HOH . K 6 HOH B 33 633 1076 HOH HOH . K 6 HOH B 34 634 1077 HOH HOH . K 6 HOH B 35 635 1079 HOH HOH . K 6 HOH B 36 636 1082 HOH HOH . K 6 HOH B 37 637 1083 HOH HOH . K 6 HOH B 38 638 1084 HOH HOH . K 6 HOH B 39 639 1088 HOH HOH . K 6 HOH B 40 640 1090 HOH HOH . K 6 HOH B 41 641 1091 HOH HOH . K 6 HOH B 42 642 1093 HOH HOH . K 6 HOH B 43 643 1096 HOH HOH . K 6 HOH B 44 644 1098 HOH HOH . K 6 HOH B 45 645 1102 HOH HOH . K 6 HOH B 46 646 1104 HOH HOH . K 6 HOH B 47 647 1105 HOH HOH . K 6 HOH B 48 648 1106 HOH HOH . K 6 HOH B 49 649 1107 HOH HOH . K 6 HOH B 50 650 1108 HOH HOH . K 6 HOH B 51 651 1109 HOH HOH . K 6 HOH B 52 652 1110 HOH HOH . K 6 HOH B 53 653 1112 HOH HOH . K 6 HOH B 54 654 1113 HOH HOH . K 6 HOH B 55 655 1114 HOH HOH . K 6 HOH B 56 656 1116 HOH HOH . K 6 HOH B 57 657 1117 HOH HOH . K 6 HOH B 58 658 1119 HOH HOH . K 6 HOH B 59 659 1122 HOH HOH . K 6 HOH B 60 660 1123 HOH HOH . K 6 HOH B 61 661 1131 HOH HOH . K 6 HOH B 62 662 1132 HOH HOH . K 6 HOH B 63 663 1135 HOH HOH . K 6 HOH B 64 664 1140 HOH HOH . K 6 HOH B 65 665 1146 HOH HOH . K 6 HOH B 66 666 1153 HOH HOH . K 6 HOH B 67 667 1155 HOH HOH . K 6 HOH B 68 668 1156 HOH HOH . K 6 HOH B 69 669 1157 HOH HOH . K 6 HOH B 70 670 1158 HOH HOH . K 6 HOH B 71 671 1169 HOH HOH . K 6 HOH B 72 672 1170 HOH HOH . K 6 HOH B 73 673 1175 HOH HOH . K 6 HOH B 74 674 1177 HOH HOH . K 6 HOH B 75 675 1179 HOH HOH . K 6 HOH B 76 676 1180 HOH HOH . K 6 HOH B 77 677 1181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 13.62 -2.175 25.437 0.5 22.39 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . G 4 14.944 -2.521 25.795 0.5 23.94 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . G 4 13.186 -0.891 26.128 0.5 26.58 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . G 4 13.926 -0.688 27.333 0.5 36.23 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . G 4 11.7 -0.99 26.49 0.5 30.04 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . G 4 11.443 0.009 27.487 0.5 49.76 ? O3 GOL 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #