data_3VFH
#
_model_server_result.job_id            91U_k9ZT0YjUjlaz2T0_Eg 
_model_server_result.datetime_utc      '2024-11-13 03:36:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vfh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    3VFH 
#
_exptl.entry_id    3VFH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              332.374 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-5-methylidene-2-{(1R)-2-oxo-1-[(phenylacetyl)amino]ethyl}-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.37 
_cell.angle_gamma         90 
_cell.entry_id            3VFH 
_cell.length_a            79.396 
_cell.length_b            97.459 
_cell.length_c            110.958 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VFH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,N 1 1 
B,H,I,O 2 1 
C,J,K,P 3 1 
D,L,M,Q 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG SER 62 B SER 70 1_555 H CAZ CD6 . B CD6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? 
covale ? covale2 C OG SER 62 C SER 70 1_555 J CAZ CD6 . C CD6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? 
#
_chem_comp.formula           'C16 H16 N2 O4 S' 
_chem_comp.formula_weight    332.374 
_chem_comp.id                CD6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-5-methylidene-2-{(1R)-2-oxo-1-[(phenylacetyl)amino]ethyl}-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAW CAA CD6 doub 70 n n 
CAA HAA CD6 sing 71 n n 
CAA HAAA CD6 sing 72 n n 
CAX OAE CD6 sing 73 n n 
OAE HOAE CD6 sing 74 n n 
OAF CAY CD6 doub 75 n n 
CAZ OAG CD6 doub 76 n n 
OAH CAX CD6 doub 77 n n 
CAJ CAI CD6 doub 78 n y 
CAI CAK CD6 sing 79 n y 
CAI HAI CD6 sing 80 n n 
CAJ CAL CD6 sing 81 n y 
CAJ HAJ CD6 sing 82 n n 
CAK CAM CD6 doub 83 n y 
CAK HAK CD6 sing 84 n n 
CAL CBB CD6 doub 85 n y 
CAL HAL CD6 sing 86 n n 
CBB CAM CD6 sing 87 n y 
CAM HAM CD6 sing 88 n n 
SAU CAN CD6 sing 89 n n 
CAN CAW CD6 sing 90 n n 
CAN HAN CD6 sing 91 n n 
CAN HANA CD6 sing 92 n n 
CAY CAP CD6 sing 93 n n 
CBB CAP CD6 sing 94 n n 
CAP HAP CD6 sing 95 n n 
CAP HAPA CD6 sing 96 n n 
CBD NAQ CD6 sing 97 n n 
NAQ CBA CD6 doub 98 n n 
CBE NAS CD6 sing 99 n n 
NAS CAY CD6 sing 100 n n 
NAS HNAS CD6 sing 101 n n 
SAU CBD CD6 sing 102 n n 
CBA CAW CD6 sing 103 n n 
CBA CAX CD6 sing 104 n n 
CBE CAZ CD6 sing 105 n n 
CAZ HAZ CD6 sing 106 n n 
CBD CBE CD6 sing 107 n n 
CBD HBD CD6 sing 108 n n 
CBE HBE CD6 sing 109 n n 
#
_atom_sites.entry_id                     3VFH 
_atom_sites.fract_transf_matrix[1][1]    0.012595 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004182 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010261 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 A 1 301 1 PO4 PO4 . 
F 2 PO4 A 1 302 5 PO4 PO4 . 
G 2 PO4 A 1 303 8 PO4 PO4 . 
H 3 CD6 B 1 301 70 CD6 CD6 . 
I 2 PO4 B 1 302 9 PO4 PO4 . 
J 3 CD6 C 1 301 70 CD6 CD6 . 
K 2 PO4 C 1 302 7 PO4 PO4 . 
L 2 PO4 D 1 301 3 PO4 PO4 . 
M 2 PO4 D 1 302 6 PO4 PO4 . 
N 4 HOH A 1 401 4 HOH HOH . 
N 4 HOH A 2 402 6 HOH HOH . 
N 4 HOH A 3 403 10 HOH HOH . 
N 4 HOH A 4 404 12 HOH HOH . 
N 4 HOH A 5 405 26 HOH HOH . 
N 4 HOH A 6 406 30 HOH HOH . 
N 4 HOH A 7 407 33 HOH HOH . 
N 4 HOH A 8 408 40 HOH HOH . 
N 4 HOH A 9 409 42 HOH HOH . 
N 4 HOH A 10 410 46 HOH HOH . 
N 4 HOH A 11 411 48 HOH HOH . 
N 4 HOH A 12 412 53 HOH HOH . 
N 4 HOH A 13 413 63 HOH HOH . 
N 4 HOH A 14 414 70 HOH HOH . 
N 4 HOH A 15 415 73 HOH HOH . 
N 4 HOH A 16 416 75 HOH HOH . 
N 4 HOH A 17 417 78 HOH HOH . 
N 4 HOH A 18 418 84 HOH HOH . 
N 4 HOH A 19 419 85 HOH HOH . 
N 4 HOH A 20 420 87 HOH HOH . 
N 4 HOH A 21 421 93 HOH HOH . 
N 4 HOH A 22 422 106 HOH HOH . 
N 4 HOH A 23 423 110 HOH HOH . 
N 4 HOH A 24 424 117 HOH HOH . 
N 4 HOH A 25 425 125 HOH HOH . 
N 4 HOH A 26 426 129 HOH HOH . 
N 4 HOH A 27 427 130 HOH HOH . 
N 4 HOH A 28 428 150 HOH HOH . 
N 4 HOH A 29 429 164 HOH HOH . 
N 4 HOH A 30 430 168 HOH HOH . 
N 4 HOH A 31 431 171 HOH HOH . 
N 4 HOH A 32 432 185 HOH HOH . 
O 4 HOH B 1 401 1 HOH HOH . 
O 4 HOH B 2 402 3 HOH HOH . 
O 4 HOH B 3 403 9 HOH HOH . 
O 4 HOH B 4 404 22 HOH HOH . 
O 4 HOH B 5 405 25 HOH HOH . 
O 4 HOH B 6 406 28 HOH HOH . 
O 4 HOH B 7 407 41 HOH HOH . 
O 4 HOH B 8 408 49 HOH HOH . 
O 4 HOH B 9 409 52 HOH HOH . 
O 4 HOH B 10 410 56 HOH HOH . 
O 4 HOH B 11 411 60 HOH HOH . 
O 4 HOH B 12 412 67 HOH HOH . 
O 4 HOH B 13 413 69 HOH HOH . 
O 4 HOH B 14 414 76 HOH HOH . 
O 4 HOH B 15 415 79 HOH HOH . 
O 4 HOH B 16 416 82 HOH HOH . 
O 4 HOH B 17 417 96 HOH HOH . 
O 4 HOH B 18 418 102 HOH HOH . 
O 4 HOH B 19 419 104 HOH HOH . 
O 4 HOH B 20 420 107 HOH HOH . 
O 4 HOH B 21 421 113 HOH HOH . 
O 4 HOH B 22 422 132 HOH HOH . 
O 4 HOH B 23 423 138 HOH HOH . 
O 4 HOH B 24 424 148 HOH HOH . 
O 4 HOH B 25 425 152 HOH HOH . 
O 4 HOH B 26 426 165 HOH HOH . 
O 4 HOH B 27 427 175 HOH HOH . 
O 4 HOH B 28 428 183 HOH HOH . 
P 4 HOH C 1 401 5 HOH HOH . 
P 4 HOH C 2 402 11 HOH HOH . 
P 4 HOH C 3 403 20 HOH HOH . 
P 4 HOH C 4 404 29 HOH HOH . 
P 4 HOH C 5 405 32 HOH HOH . 
P 4 HOH C 6 406 34 HOH HOH . 
P 4 HOH C 7 407 37 HOH HOH . 
P 4 HOH C 8 408 38 HOH HOH . 
P 4 HOH C 9 409 43 HOH HOH . 
P 4 HOH C 10 410 55 HOH HOH . 
P 4 HOH C 11 411 59 HOH HOH . 
P 4 HOH C 12 412 66 HOH HOH . 
P 4 HOH C 13 413 68 HOH HOH . 
P 4 HOH C 14 414 71 HOH HOH . 
P 4 HOH C 15 415 74 HOH HOH . 
P 4 HOH C 16 416 83 HOH HOH . 
P 4 HOH C 17 417 89 HOH HOH . 
P 4 HOH C 18 418 92 HOH HOH . 
P 4 HOH C 19 419 95 HOH HOH . 
P 4 HOH C 20 420 100 HOH HOH . 
P 4 HOH C 21 421 101 HOH HOH . 
P 4 HOH C 22 422 105 HOH HOH . 
P 4 HOH C 23 423 111 HOH HOH . 
P 4 HOH C 24 424 112 HOH HOH . 
P 4 HOH C 25 425 127 HOH HOH . 
P 4 HOH C 26 426 128 HOH HOH . 
P 4 HOH C 27 427 133 HOH HOH . 
P 4 HOH C 28 428 134 HOH HOH . 
P 4 HOH C 29 429 147 HOH HOH . 
P 4 HOH C 30 430 161 HOH HOH . 
P 4 HOH C 31 431 182 HOH HOH . 
P 4 HOH C 32 432 186 HOH HOH . 
Q 4 HOH D 1 401 13 HOH HOH . 
Q 4 HOH D 2 402 15 HOH HOH . 
Q 4 HOH D 3 403 16 HOH HOH . 
Q 4 HOH D 4 404 18 HOH HOH . 
Q 4 HOH D 5 405 23 HOH HOH . 
Q 4 HOH D 6 406 24 HOH HOH . 
Q 4 HOH D 7 407 36 HOH HOH . 
Q 4 HOH D 8 408 45 HOH HOH . 
Q 4 HOH D 9 409 57 HOH HOH . 
Q 4 HOH D 10 410 86 HOH HOH . 
Q 4 HOH D 11 411 97 HOH HOH . 
Q 4 HOH D 12 412 98 HOH HOH . 
Q 4 HOH D 13 413 123 HOH HOH . 
Q 4 HOH D 14 414 124 HOH HOH . 
Q 4 HOH D 15 415 131 HOH HOH . 
Q 4 HOH D 16 416 141 HOH HOH . 
Q 4 HOH D 17 417 144 HOH HOH . 
Q 4 HOH D 18 418 146 HOH HOH . 
Q 4 HOH D 19 419 159 HOH HOH . 
Q 4 HOH D 20 420 177 HOH HOH . 
Q 4 HOH D 21 421 184 HOH HOH . 
Q 4 HOH D 22 422 187 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA CD6 . . . H 3 17 7.238 28.61 1 76 ? CAA CD6 301 B 1 
HETATM 2 O OAE CD6 . . . H 3 15.321 5.703 28.947 1 70.85 ? OAE CD6 301 B 1 
HETATM 3 O OAF CD6 . . . H 3 15.317 13.059 27.976 1 104.21 ? OAF CD6 301 B 1 
HETATM 4 O OAG CD6 . . . H 3 12.497 10.152 29.76 1 77.04 ? OAG CD6 301 B 1 
HETATM 5 O OAH CD6 . . . H 3 13.264 5.982 28.342 1 47.79 ? OAH CD6 301 B 1 
HETATM 6 C CAI CD6 . . . H 3 19.459 15.004 28.578 1 127.72 ? CAI CD6 301 B 1 
HETATM 7 C CAJ CD6 . . . H 3 19.481 13.759 27.96 1 127.73 ? CAJ CD6 301 B 1 
HETATM 8 C CAK CD6 . . . H 3 18.517 15.272 29.564 1 125.71 ? CAK CD6 301 B 1 
HETATM 9 C CAL CD6 . . . H 3 18.561 12.783 28.327 1 123.62 ? CAL CD6 301 B 1 
HETATM 10 C CAM CD6 . . . H 3 17.598 14.297 29.931 1 123.97 ? CAM CD6 301 B 1 
HETATM 11 C CAN CD6 . . . H 3 16.529 9.313 27.529 1 73.93 ? CAN CD6 301 B 1 
HETATM 12 C CAP CD6 . . . H 3 16.701 12.077 29.68 1 111.73 ? CAP CD6 301 B 1 
HETATM 13 N NAQ CD6 . . . H 3 13.764 8.365 27.338 1 63.77 ? NAQ CD6 301 B 1 
HETATM 14 N NAS CD6 . . . H 3 14.807 10.959 28.662 1 101.82 ? NAS CD6 301 B 1 
HETATM 15 S SAU CD6 . . . H 3 15.617 9.804 26.029 1 159.86 ? SAU CD6 301 B 1 
HETATM 16 C CAW CD6 . . . H 3 16.081 8.081 27.998 1 68.15 ? CAW CD6 301 B 1 
HETATM 17 C CAX CD6 . . . H 3 14.437 6.404 28.413 1 42.35 ? CAX CD6 301 B 1 
HETATM 18 C CAY CD6 . . . H 3 15.538 12.081 28.687 1 106.59 ? CAY CD6 301 B 1 
HETATM 19 C CAZ CD6 . . . H 3 12.414 10.443 28.569 1 75.73 ? CAZ CD6 301 B 1 
HETATM 20 C CBA CD6 . . . H 3 14.756 7.651 27.898 1 46.11 ? CBA CD6 301 B 1 
HETATM 21 C CBB CD6 . . . H 3 17.62 13.052 29.313 1 120.16 ? CBB CD6 301 B 1 
HETATM 22 C CBD CD6 . . . H 3 13.945 9.705 26.741 1 80.47 ? CBD CD6 301 B 1 
HETATM 23 C CBE CD6 . . . H 3 13.657 10.808 27.76 1 89.01 ? CBE CD6 301 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#