data_3VFJ # _model_server_result.job_id vuruy9XcdaSxmdxcJJgVng _model_server_result.datetime_utc '2024-11-27 16:01:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 3VFJ # _exptl.entry_id 3VFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VFJ _cell.length_a 40.32 _cell.length_b 123.61 _cell.length_c 156.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 374 A GLY 373 1_555 A N CCS 375 A CCS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CCS 375 A CCS 374 1_555 A N LYS 376 A LYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C LYS 376 A LYS 375 1_555 A N DAL 377 A DAL 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C DAL 377 A DAL 376 1_555 A N DAL 378 A DAL 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C GHP 1 G GHP 1 1_555 B N 3MY 2 G 3MY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C5 GHP 1 G GHP 1 1_555 B OD1 3FG 3 G 3FG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale7 B C 3MY 2 G 3MY 2 1_555 B N 3FG 3 G 3FG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B OBD 3MY 2 G 3MY 2 1_555 B C3 GHP 4 G GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale9 B C 3FG 3 G 3FG 3 1_555 B N GHP 4 G GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 B C GHP 4 G GHP 4 1_555 B N GHP 5 G GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C5 GHP 4 G GHP 4 1_555 B OH OMX 6 G OMX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale12 B O4 GHP 4 G GHP 4 1_555 N C1 GCS . G GCS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale13 B C GHP 5 G GHP 5 1_555 B N OMX 6 G OMX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 B C3 GHP 5 G GHP 5 1_555 B CG1 3FG 7 G 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale15 B C OMX 6 G OMX 6 1_555 B N 3FG 7 G 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 B OC OMX 6 G OMX 6 1_555 P C1 NAG . G NAG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale17 B OD1 3FG 7 G 3FG 7 1_555 Q C1 MAN . G MAN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale18 N N2 GCS . G GCS 8 1_555 O C T55 . G T55 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? metalc ? metalc1 A ND1 HIS 40 A HIS 39 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A O HIS 40 A HIS 39 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc3 A OD2 ASP 66 A ASP 65 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A OD1 ASP 66 A ASP 65 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc5 A OD2 ASP 83 A ASP 82 1_555 J ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc6 A OE2 GLU 112 A GLU 111 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc7 A OE1 GLU 173 A GLU 172 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc8 A OD2 ASP 178 A ASP 177 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc9 A NE2 HIS 204 A HIS 203 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc10 A OE2 GLU 289 A GLU 288 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc11 A OE1 GLU 289 A GLU 288 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc12 A OE1 GLU 292 A GLU 291 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc13 A OE1 GLU 360 A GLU 359 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc14 A OD1 ASP 364 A ASP 363 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc15 A OD2 ASP 364 A ASP 363 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc16 C ZN ZN . A ZN 401 1_555 L OXT ACT . A ACT 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc17 D ZN ZN . A ZN 402 1_555 S O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc18 F ZN ZN . A ZN 404 1_555 S O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc19 G ZN ZN . A ZN 405 1_555 S O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc20 H ZN ZN . A ZN 406 1_555 S O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc21 H ZN ZN . A ZN 406 1_555 S O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc22 I ZN ZN . A ZN 407 1_555 S O HOH . A HOH 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VFJ _atom_sites.fract_transf_matrix[1][1] 0.024802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 1 ZN ZN . D 3 ZN A 1 402 2 ZN ZN . E 3 ZN A 1 403 3 ZN ZN . F 3 ZN A 1 404 4 ZN ZN . G 3 ZN A 1 405 5 ZN ZN . H 3 ZN A 1 406 6 ZN ZN . I 3 ZN A 1 407 7 ZN ZN . J 3 ZN A 1 408 8 ZN ZN . K 4 ACT A 1 409 1 ACT ACT . L 4 ACT A 1 410 2 ACT ACT . M 5 CAC A 1 411 1 CAC CAC . N 6 GCS G 1 8 8 GCS GCS . O 7 T55 G 1 9 9 T55 T55 . P 8 NAG G 1 10 10 NAG NAG . Q 9 MAN G 1 11 11 MAN MAN . R 5 CAC G 1 104 2 CAC CAC . S 10 HOH A 1 501 1 HOH HOH . S 10 HOH A 2 502 2 HOH HOH . S 10 HOH A 3 503 3 HOH HOH . S 10 HOH A 4 504 4 HOH HOH . S 10 HOH A 5 505 5 HOH HOH . S 10 HOH A 6 506 6 HOH HOH . S 10 HOH A 7 507 7 HOH HOH . S 10 HOH A 8 508 8 HOH HOH . S 10 HOH A 9 509 9 HOH HOH . S 10 HOH A 10 510 10 HOH HOH . S 10 HOH A 11 511 11 HOH HOH . S 10 HOH A 12 512 12 HOH HOH . S 10 HOH A 13 513 13 HOH HOH . S 10 HOH A 14 514 14 HOH HOH . S 10 HOH A 15 515 15 HOH HOH . S 10 HOH A 16 516 16 HOH HOH . S 10 HOH A 17 517 17 HOH HOH . S 10 HOH A 18 518 18 HOH HOH . S 10 HOH A 19 519 19 HOH HOH . S 10 HOH A 20 520 20 HOH HOH . S 10 HOH A 21 521 21 HOH HOH . S 10 HOH A 22 522 22 HOH HOH . S 10 HOH A 23 523 23 HOH HOH . S 10 HOH A 24 524 24 HOH HOH . S 10 HOH A 25 525 25 HOH HOH . S 10 HOH A 26 526 26 HOH HOH . S 10 HOH A 27 527 27 HOH HOH . S 10 HOH A 28 528 28 HOH HOH . S 10 HOH A 29 529 29 HOH HOH . S 10 HOH A 30 530 30 HOH HOH . S 10 HOH A 31 531 31 HOH HOH . S 10 HOH A 32 532 32 HOH HOH . S 10 HOH A 33 533 33 HOH HOH . S 10 HOH A 34 534 34 HOH HOH . S 10 HOH A 35 535 35 HOH HOH . S 10 HOH A 36 536 36 HOH HOH . S 10 HOH A 37 537 37 HOH HOH . S 10 HOH A 38 538 38 HOH HOH . S 10 HOH A 39 539 39 HOH HOH . S 10 HOH A 40 540 40 HOH HOH . S 10 HOH A 41 541 41 HOH HOH . S 10 HOH A 42 542 42 HOH HOH . S 10 HOH A 43 543 43 HOH HOH . S 10 HOH A 44 544 44 HOH HOH . S 10 HOH A 45 545 45 HOH HOH . S 10 HOH A 46 546 46 HOH HOH . S 10 HOH A 47 547 47 HOH HOH . S 10 HOH A 48 548 48 HOH HOH . S 10 HOH A 49 549 49 HOH HOH . S 10 HOH A 50 550 50 HOH HOH . S 10 HOH A 51 551 51 HOH HOH . S 10 HOH A 52 552 52 HOH HOH . S 10 HOH A 53 553 53 HOH HOH . S 10 HOH A 54 554 54 HOH HOH . S 10 HOH A 55 555 55 HOH HOH . S 10 HOH A 56 556 56 HOH HOH . S 10 HOH A 57 557 57 HOH HOH . S 10 HOH A 58 558 58 HOH HOH . S 10 HOH A 59 559 59 HOH HOH . S 10 HOH A 60 560 60 HOH HOH . S 10 HOH A 61 561 61 HOH HOH . S 10 HOH A 62 562 62 HOH HOH . S 10 HOH A 63 563 64 HOH HOH . S 10 HOH A 64 564 65 HOH HOH . S 10 HOH A 65 565 66 HOH HOH . S 10 HOH A 66 566 67 HOH HOH . S 10 HOH A 67 567 68 HOH HOH . S 10 HOH A 68 568 69 HOH HOH . S 10 HOH A 69 569 71 HOH HOH . S 10 HOH A 70 570 72 HOH HOH . S 10 HOH A 71 571 73 HOH HOH . S 10 HOH A 72 572 74 HOH HOH . S 10 HOH A 73 573 76 HOH HOH . S 10 HOH A 74 574 78 HOH HOH . S 10 HOH A 75 575 79 HOH HOH . S 10 HOH A 76 576 80 HOH HOH . S 10 HOH A 77 577 81 HOH HOH . S 10 HOH A 78 578 82 HOH HOH . S 10 HOH A 79 579 83 HOH HOH . S 10 HOH A 80 580 84 HOH HOH . S 10 HOH A 81 581 85 HOH HOH . S 10 HOH A 82 582 86 HOH HOH . S 10 HOH A 83 583 87 HOH HOH . S 10 HOH A 84 584 88 HOH HOH . S 10 HOH A 85 585 89 HOH HOH . S 10 HOH A 86 586 90 HOH HOH . S 10 HOH A 87 587 91 HOH HOH . S 10 HOH A 88 588 92 HOH HOH . S 10 HOH A 89 589 93 HOH HOH . S 10 HOH A 90 590 94 HOH HOH . S 10 HOH A 91 591 95 HOH HOH . S 10 HOH A 92 592 96 HOH HOH . S 10 HOH A 93 593 97 HOH HOH . S 10 HOH A 94 594 98 HOH HOH . S 10 HOH A 95 595 99 HOH HOH . S 10 HOH A 96 596 100 HOH HOH . S 10 HOH A 97 597 101 HOH HOH . S 10 HOH A 98 598 102 HOH HOH . S 10 HOH A 99 599 103 HOH HOH . S 10 HOH A 100 600 104 HOH HOH . S 10 HOH A 101 601 105 HOH HOH . S 10 HOH A 102 602 106 HOH HOH . S 10 HOH A 103 603 107 HOH HOH . S 10 HOH A 104 604 108 HOH HOH . S 10 HOH A 105 605 109 HOH HOH . S 10 HOH A 106 606 110 HOH HOH . S 10 HOH A 107 607 111 HOH HOH . S 10 HOH A 108 608 112 HOH HOH . S 10 HOH A 109 609 113 HOH HOH . S 10 HOH A 110 610 114 HOH HOH . S 10 HOH A 111 611 115 HOH HOH . S 10 HOH A 112 612 116 HOH HOH . S 10 HOH A 113 613 117 HOH HOH . S 10 HOH A 114 614 118 HOH HOH . S 10 HOH A 115 615 119 HOH HOH . S 10 HOH A 116 616 120 HOH HOH . S 10 HOH A 117 617 121 HOH HOH . S 10 HOH A 118 618 122 HOH HOH . S 10 HOH A 119 619 123 HOH HOH . S 10 HOH A 120 620 124 HOH HOH . S 10 HOH A 121 621 125 HOH HOH . S 10 HOH A 122 622 126 HOH HOH . S 10 HOH A 123 623 127 HOH HOH . S 10 HOH A 124 624 128 HOH HOH . S 10 HOH A 125 625 129 HOH HOH . S 10 HOH A 126 626 130 HOH HOH . S 10 HOH A 127 627 131 HOH HOH . S 10 HOH A 128 628 132 HOH HOH . S 10 HOH A 129 629 133 HOH HOH . S 10 HOH A 130 630 134 HOH HOH . S 10 HOH A 131 631 135 HOH HOH . S 10 HOH A 132 632 136 HOH HOH . S 10 HOH A 133 633 137 HOH HOH . S 10 HOH A 134 634 138 HOH HOH . S 10 HOH A 135 635 139 HOH HOH . S 10 HOH A 136 636 140 HOH HOH . S 10 HOH A 137 637 141 HOH HOH . S 10 HOH A 138 638 142 HOH HOH . S 10 HOH A 139 639 143 HOH HOH . S 10 HOH A 140 640 144 HOH HOH . S 10 HOH A 141 641 145 HOH HOH . S 10 HOH A 142 642 146 HOH HOH . S 10 HOH A 143 643 147 HOH HOH . S 10 HOH A 144 644 148 HOH HOH . S 10 HOH A 145 645 149 HOH HOH . S 10 HOH A 146 646 151 HOH HOH . S 10 HOH A 147 647 152 HOH HOH . S 10 HOH A 148 648 153 HOH HOH . S 10 HOH A 149 649 154 HOH HOH . S 10 HOH A 150 650 155 HOH HOH . T 10 HOH G 1 201 63 HOH HOH . T 10 HOH G 2 202 70 HOH HOH . T 10 HOH G 3 203 75 HOH HOH . T 10 HOH G 4 204 77 HOH HOH . T 10 HOH G 5 205 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.405 _atom_site.Cartn_y 24.595 _atom_site.Cartn_z -10.361 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 467 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #