data_3VFL # _model_server_result.job_id JmKL9821pXhWs4HdR1IPhw _model_server_result.datetime_utc '2024-10-19 09:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vfl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":402}' # _entry.id 3VFL # _exptl.entry_id 3VFL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VFL _cell.length_a 62.357 _cell.length_b 105.332 _cell.length_c 105.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 54 A SER 54 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc2 A O LEU 57 A LEU 57 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc3 A OE2 GLU 62 A GLU 62 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A O ALA 159 A ALA 159 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc5 A O HIS 161 A HIS 161 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc6 A O ILE 164 A ILE 164 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc7 B O SER 54 B SER 54 1_555 J K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc8 B O LEU 57 B LEU 57 1_555 J K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc9 B OE2 GLU 62 B GLU 62 1_555 J K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc10 B O ALA 159 B ALA 159 1_555 I K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc11 B O HIS 161 B HIS 161 1_555 I K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc12 B O ILE 164 B ILE 164 1_555 I K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc13 J K K . B K 402 1_555 N O HOH . B HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VFL _atom_sites.fract_transf_matrix[1][1] 0.016037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009494 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 401 1 K K . D 2 K A 1 402 3 K K . E 3 GOL A 1 403 1 GOL GOL . F 3 GOL A 1 404 2 GOL GOL . G 3 GOL A 1 405 3 GOL GOL . H 4 MES A 1 406 1 MES MES . I 2 K B 1 401 2 K K . J 2 K B 1 402 4 K K . K 3 GOL B 1 403 4 GOL GOL . L 4 MES B 1 404 2 MES MES . M 5 HOH A 1 501 1 HOH HOH . M 5 HOH A 2 502 7 HOH HOH . M 5 HOH A 3 503 8 HOH HOH . M 5 HOH A 4 504 9 HOH HOH . M 5 HOH A 5 505 12 HOH HOH . M 5 HOH A 6 506 19 HOH HOH . M 5 HOH A 7 507 21 HOH HOH . M 5 HOH A 8 508 23 HOH HOH . M 5 HOH A 9 509 24 HOH HOH . M 5 HOH A 10 510 25 HOH HOH . M 5 HOH A 11 511 26 HOH HOH . M 5 HOH A 12 512 27 HOH HOH . M 5 HOH A 13 513 28 HOH HOH . M 5 HOH A 14 514 30 HOH HOH . M 5 HOH A 15 515 33 HOH HOH . M 5 HOH A 16 516 34 HOH HOH . M 5 HOH A 17 517 35 HOH HOH . M 5 HOH A 18 518 36 HOH HOH . M 5 HOH A 19 519 38 HOH HOH . M 5 HOH A 20 520 39 HOH HOH . M 5 HOH A 21 521 40 HOH HOH . M 5 HOH A 22 522 41 HOH HOH . M 5 HOH A 23 523 42 HOH HOH . M 5 HOH A 24 524 45 HOH HOH . M 5 HOH A 25 525 49 HOH HOH . M 5 HOH A 26 526 56 HOH HOH . M 5 HOH A 27 527 58 HOH HOH . M 5 HOH A 28 528 60 HOH HOH . M 5 HOH A 29 529 62 HOH HOH . M 5 HOH A 30 530 64 HOH HOH . M 5 HOH A 31 531 68 HOH HOH . M 5 HOH A 32 532 70 HOH HOH . M 5 HOH A 33 533 71 HOH HOH . M 5 HOH A 34 534 73 HOH HOH . M 5 HOH A 35 535 76 HOH HOH . M 5 HOH A 36 536 79 HOH HOH . M 5 HOH A 37 537 80 HOH HOH . M 5 HOH A 38 538 81 HOH HOH . M 5 HOH A 39 539 84 HOH HOH . M 5 HOH A 40 540 89 HOH HOH . M 5 HOH A 41 541 90 HOH HOH . M 5 HOH A 42 542 92 HOH HOH . M 5 HOH A 43 543 95 HOH HOH . M 5 HOH A 44 544 96 HOH HOH . M 5 HOH A 45 545 98 HOH HOH . M 5 HOH A 46 546 99 HOH HOH . M 5 HOH A 47 547 101 HOH HOH . M 5 HOH A 48 548 102 HOH HOH . M 5 HOH A 49 549 104 HOH HOH . M 5 HOH A 50 550 108 HOH HOH . M 5 HOH A 51 551 109 HOH HOH . M 5 HOH A 52 552 112 HOH HOH . M 5 HOH A 53 553 117 HOH HOH . M 5 HOH A 54 554 121 HOH HOH . M 5 HOH A 55 555 125 HOH HOH . M 5 HOH A 56 556 128 HOH HOH . M 5 HOH A 57 557 130 HOH HOH . M 5 HOH A 58 558 133 HOH HOH . M 5 HOH A 59 559 140 HOH HOH . M 5 HOH A 60 560 141 HOH HOH . M 5 HOH A 61 561 144 HOH HOH . M 5 HOH A 62 562 148 HOH HOH . M 5 HOH A 63 563 152 HOH HOH . M 5 HOH A 64 564 154 HOH HOH . M 5 HOH A 65 565 155 HOH HOH . M 5 HOH A 66 566 157 HOH HOH . M 5 HOH A 67 567 158 HOH HOH . M 5 HOH A 68 568 159 HOH HOH . M 5 HOH A 69 569 160 HOH HOH . M 5 HOH A 70 570 163 HOH HOH . M 5 HOH A 71 571 175 HOH HOH . M 5 HOH A 72 572 180 HOH HOH . M 5 HOH A 73 573 181 HOH HOH . M 5 HOH A 74 574 186 HOH HOH . M 5 HOH A 75 575 188 HOH HOH . M 5 HOH A 76 576 189 HOH HOH . M 5 HOH A 77 577 192 HOH HOH . M 5 HOH A 78 578 194 HOH HOH . M 5 HOH A 79 579 204 HOH HOH . M 5 HOH A 80 580 205 HOH HOH . M 5 HOH A 81 581 209 HOH HOH . M 5 HOH A 82 582 215 HOH HOH . M 5 HOH A 83 583 218 HOH HOH . M 5 HOH A 84 584 219 HOH HOH . M 5 HOH A 85 585 223 HOH HOH . M 5 HOH A 86 586 224 HOH HOH . M 5 HOH A 87 587 225 HOH HOH . M 5 HOH A 88 588 226 HOH HOH . M 5 HOH A 89 589 229 HOH HOH . M 5 HOH A 90 590 231 HOH HOH . M 5 HOH A 91 591 232 HOH HOH . M 5 HOH A 92 592 233 HOH HOH . M 5 HOH A 93 593 235 HOH HOH . M 5 HOH A 94 594 236 HOH HOH . M 5 HOH A 95 595 248 HOH HOH . M 5 HOH A 96 596 255 HOH HOH . M 5 HOH A 97 597 256 HOH HOH . M 5 HOH A 98 598 257 HOH HOH . M 5 HOH A 99 599 259 HOH HOH . M 5 HOH A 100 600 260 HOH HOH . M 5 HOH A 101 601 261 HOH HOH . M 5 HOH A 102 602 263 HOH HOH . M 5 HOH A 103 603 264 HOH HOH . M 5 HOH A 104 604 266 HOH HOH . M 5 HOH A 105 605 267 HOH HOH . M 5 HOH A 106 606 268 HOH HOH . M 5 HOH A 107 607 273 HOH HOH . M 5 HOH A 108 608 274 HOH HOH . M 5 HOH A 109 609 275 HOH HOH . M 5 HOH A 110 610 281 HOH HOH . M 5 HOH A 111 611 283 HOH HOH . M 5 HOH A 112 612 285 HOH HOH . M 5 HOH A 113 613 286 HOH HOH . M 5 HOH A 114 614 288 HOH HOH . M 5 HOH A 115 615 290 HOH HOH . M 5 HOH A 116 616 291 HOH HOH . M 5 HOH A 117 617 292 HOH HOH . M 5 HOH A 118 618 294 HOH HOH . M 5 HOH A 119 619 295 HOH HOH . N 5 HOH B 1 501 3 HOH HOH . N 5 HOH B 2 502 4 HOH HOH . N 5 HOH B 3 503 5 HOH HOH . N 5 HOH B 4 504 6 HOH HOH . N 5 HOH B 5 505 10 HOH HOH . N 5 HOH B 6 506 13 HOH HOH . N 5 HOH B 7 507 16 HOH HOH . N 5 HOH B 8 508 17 HOH HOH . N 5 HOH B 9 509 18 HOH HOH . N 5 HOH B 10 510 29 HOH HOH . N 5 HOH B 11 511 31 HOH HOH . N 5 HOH B 12 512 37 HOH HOH . N 5 HOH B 13 513 43 HOH HOH . N 5 HOH B 14 514 44 HOH HOH . N 5 HOH B 15 515 46 HOH HOH . N 5 HOH B 16 516 47 HOH HOH . N 5 HOH B 17 517 50 HOH HOH . N 5 HOH B 18 518 51 HOH HOH . N 5 HOH B 19 519 52 HOH HOH . N 5 HOH B 20 520 53 HOH HOH . N 5 HOH B 21 521 54 HOH HOH . N 5 HOH B 22 522 55 HOH HOH . N 5 HOH B 23 523 57 HOH HOH . N 5 HOH B 24 524 59 HOH HOH . N 5 HOH B 25 525 65 HOH HOH . N 5 HOH B 26 526 66 HOH HOH . N 5 HOH B 27 527 69 HOH HOH . N 5 HOH B 28 528 72 HOH HOH . N 5 HOH B 29 529 77 HOH HOH . N 5 HOH B 30 530 78 HOH HOH . N 5 HOH B 31 531 82 HOH HOH . N 5 HOH B 32 532 85 HOH HOH . N 5 HOH B 33 533 86 HOH HOH . N 5 HOH B 34 534 88 HOH HOH . N 5 HOH B 35 535 91 HOH HOH . N 5 HOH B 36 536 93 HOH HOH . N 5 HOH B 37 537 94 HOH HOH . N 5 HOH B 38 538 97 HOH HOH . N 5 HOH B 39 539 103 HOH HOH . N 5 HOH B 40 540 105 HOH HOH . N 5 HOH B 41 541 106 HOH HOH . N 5 HOH B 42 542 107 HOH HOH . N 5 HOH B 43 543 110 HOH HOH . N 5 HOH B 44 544 111 HOH HOH . N 5 HOH B 45 545 113 HOH HOH . N 5 HOH B 46 546 114 HOH HOH . N 5 HOH B 47 547 116 HOH HOH . N 5 HOH B 48 548 118 HOH HOH . N 5 HOH B 49 549 119 HOH HOH . N 5 HOH B 50 550 123 HOH HOH . N 5 HOH B 51 551 124 HOH HOH . N 5 HOH B 52 552 126 HOH HOH . N 5 HOH B 53 553 127 HOH HOH . N 5 HOH B 54 554 129 HOH HOH . N 5 HOH B 55 555 131 HOH HOH . N 5 HOH B 56 556 132 HOH HOH . N 5 HOH B 57 557 134 HOH HOH . N 5 HOH B 58 558 135 HOH HOH . N 5 HOH B 59 559 137 HOH HOH . N 5 HOH B 60 560 138 HOH HOH . N 5 HOH B 61 561 142 HOH HOH . N 5 HOH B 62 562 146 HOH HOH . N 5 HOH B 63 563 147 HOH HOH . N 5 HOH B 64 564 149 HOH HOH . N 5 HOH B 65 565 153 HOH HOH . N 5 HOH B 66 566 162 HOH HOH . N 5 HOH B 67 567 167 HOH HOH . N 5 HOH B 68 568 169 HOH HOH . N 5 HOH B 69 569 174 HOH HOH . N 5 HOH B 70 570 176 HOH HOH . N 5 HOH B 71 571 185 HOH HOH . N 5 HOH B 72 572 190 HOH HOH . N 5 HOH B 73 573 191 HOH HOH . N 5 HOH B 74 574 193 HOH HOH . N 5 HOH B 75 575 198 HOH HOH . N 5 HOH B 76 576 207 HOH HOH . N 5 HOH B 77 577 208 HOH HOH . N 5 HOH B 78 578 211 HOH HOH . N 5 HOH B 79 579 212 HOH HOH . N 5 HOH B 80 580 213 HOH HOH . N 5 HOH B 81 581 214 HOH HOH . N 5 HOH B 82 582 220 HOH HOH . N 5 HOH B 83 583 222 HOH HOH . N 5 HOH B 84 584 230 HOH HOH . N 5 HOH B 85 585 237 HOH HOH . N 5 HOH B 86 586 238 HOH HOH . N 5 HOH B 87 587 239 HOH HOH . N 5 HOH B 88 588 240 HOH HOH . N 5 HOH B 89 589 241 HOH HOH . N 5 HOH B 90 590 242 HOH HOH . N 5 HOH B 91 591 243 HOH HOH . N 5 HOH B 92 592 244 HOH HOH . N 5 HOH B 93 593 246 HOH HOH . N 5 HOH B 94 594 247 HOH HOH . N 5 HOH B 95 595 249 HOH HOH . N 5 HOH B 96 596 251 HOH HOH . N 5 HOH B 97 597 252 HOH HOH . N 5 HOH B 98 598 253 HOH HOH . N 5 HOH B 99 599 254 HOH HOH . N 5 HOH B 100 600 262 HOH HOH . N 5 HOH B 101 601 270 HOH HOH . N 5 HOH B 102 602 271 HOH HOH . N 5 HOH B 103 603 276 HOH HOH . N 5 HOH B 104 604 277 HOH HOH . N 5 HOH B 105 605 279 HOH HOH . N 5 HOH B 106 606 282 HOH HOH . N 5 HOH B 107 607 284 HOH HOH . N 5 HOH B 108 608 287 HOH HOH . N 5 HOH B 109 609 289 HOH HOH . N 5 HOH B 110 610 293 HOH HOH . N 5 HOH B 111 611 296 HOH HOH . N 5 HOH B 112 612 297 HOH HOH . N 5 HOH B 113 613 298 HOH HOH . N 5 HOH B 114 614 299 HOH HOH . N 5 HOH B 115 615 300 HOH HOH . N 5 HOH B 116 616 301 HOH HOH . N 5 HOH B 117 617 302 HOH HOH . N 5 HOH B 118 618 303 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x -18.673 _atom_site.Cartn_y -25.532 _atom_site.Cartn_z 16.736 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #