data_3VG0 # _model_server_result.job_id hBjspTsOq8qilTV6iNeOhg _model_server_result.datetime_utc '2024-12-22 07:56:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vg0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3VG0 # _exptl.entry_id 3VG0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.06 _cell.angle_gamma 90 _cell.entry_id 3VG0 _cell.length_a 139.219 _cell.length_b 39.966 _cell.length_c 105.132 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VG0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 A 1 NAG G 3 NAG 3 n C NAG 2 A 2 NAG G 5 NAG 3 n C FUC 3 A 3 FUC G 4 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 L CYS 25 1_555 A SG CYS 89 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 135 L CYS 136 1_555 A SG CYS 195 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf3 B SG CYS 24 H CYS 24 1_555 B SG CYS 97 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 B SG CYS 146 H CYS 146 1_555 B SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? covale ? covale1 A ND2 ASN 21 L ASN 22 1_555 C C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale3 C O6 NAG . A NAG 1 1_555 C C1 FUC . A FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 349 n n S O2 SO4 doub 350 n n S O3 SO4 sing 351 n n S O4 SO4 sing 352 n n # _atom_sites.entry_id 3VG0 _atom_sites.fract_transf_matrix[1][1] 0.007183 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005623 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACT L 1 304 1 ACT ACT . E 5 SO4 H 1 301 1 SO4 SO4 . F 6 HOH L 1 401 2 HOH HOH . F 6 HOH L 2 402 3 HOH HOH . F 6 HOH L 3 403 5 HOH HOH . F 6 HOH L 4 404 6 HOH HOH . F 6 HOH L 5 405 7 HOH HOH . F 6 HOH L 6 406 20 HOH HOH . F 6 HOH L 7 407 21 HOH HOH . F 6 HOH L 8 408 22 HOH HOH . F 6 HOH L 9 409 23 HOH HOH . F 6 HOH L 10 410 24 HOH HOH . F 6 HOH L 11 411 25 HOH HOH . F 6 HOH L 12 412 29 HOH HOH . F 6 HOH L 13 413 30 HOH HOH . F 6 HOH L 14 414 35 HOH HOH . F 6 HOH L 15 415 36 HOH HOH . F 6 HOH L 16 416 38 HOH HOH . F 6 HOH L 17 417 40 HOH HOH . F 6 HOH L 18 418 42 HOH HOH . F 6 HOH L 19 419 46 HOH HOH . F 6 HOH L 20 420 48 HOH HOH . F 6 HOH L 21 421 50 HOH HOH . F 6 HOH L 22 422 59 HOH HOH . F 6 HOH L 23 423 60 HOH HOH . F 6 HOH L 24 424 61 HOH HOH . F 6 HOH L 25 425 62 HOH HOH . F 6 HOH L 26 426 63 HOH HOH . F 6 HOH L 27 427 64 HOH HOH . F 6 HOH L 28 428 65 HOH HOH . F 6 HOH L 29 429 66 HOH HOH . F 6 HOH L 30 430 67 HOH HOH . F 6 HOH L 31 431 68 HOH HOH . F 6 HOH L 32 432 69 HOH HOH . F 6 HOH L 33 433 70 HOH HOH . F 6 HOH L 34 434 71 HOH HOH . F 6 HOH L 35 435 72 HOH HOH . F 6 HOH L 36 436 77 HOH HOH . F 6 HOH L 37 437 80 HOH HOH . F 6 HOH L 38 438 89 HOH HOH . F 6 HOH L 39 439 92 HOH HOH . F 6 HOH L 40 440 99 HOH HOH . G 6 HOH H 1 401 1 HOH HOH . G 6 HOH H 2 402 4 HOH HOH . G 6 HOH H 3 403 8 HOH HOH . G 6 HOH H 4 404 9 HOH HOH . G 6 HOH H 5 405 10 HOH HOH . G 6 HOH H 6 406 11 HOH HOH . G 6 HOH H 7 407 12 HOH HOH . G 6 HOH H 8 408 13 HOH HOH . G 6 HOH H 9 409 14 HOH HOH . G 6 HOH H 10 410 15 HOH HOH . G 6 HOH H 11 411 16 HOH HOH . G 6 HOH H 12 412 18 HOH HOH . G 6 HOH H 13 413 19 HOH HOH . G 6 HOH H 14 414 26 HOH HOH . G 6 HOH H 15 415 27 HOH HOH . G 6 HOH H 16 416 28 HOH HOH . G 6 HOH H 17 417 31 HOH HOH . G 6 HOH H 18 418 33 HOH HOH . G 6 HOH H 19 419 37 HOH HOH . G 6 HOH H 20 420 39 HOH HOH . G 6 HOH H 21 421 41 HOH HOH . G 6 HOH H 22 422 43 HOH HOH . G 6 HOH H 23 423 45 HOH HOH . G 6 HOH H 24 424 47 HOH HOH . G 6 HOH H 25 425 52 HOH HOH . G 6 HOH H 26 426 53 HOH HOH . G 6 HOH H 27 427 54 HOH HOH . G 6 HOH H 28 428 55 HOH HOH . G 6 HOH H 29 429 56 HOH HOH . G 6 HOH H 30 430 57 HOH HOH . G 6 HOH H 31 431 58 HOH HOH . G 6 HOH H 32 432 73 HOH HOH . G 6 HOH H 33 433 74 HOH HOH . G 6 HOH H 34 434 75 HOH HOH . G 6 HOH H 35 435 76 HOH HOH . G 6 HOH H 36 436 78 HOH HOH . G 6 HOH H 37 437 79 HOH HOH . G 6 HOH H 38 438 81 HOH HOH . G 6 HOH H 39 439 82 HOH HOH . G 6 HOH H 40 440 84 HOH HOH . G 6 HOH H 41 441 85 HOH HOH . G 6 HOH H 42 442 86 HOH HOH . G 6 HOH H 43 443 87 HOH HOH . G 6 HOH H 44 444 88 HOH HOH . G 6 HOH H 45 445 93 HOH HOH . G 6 HOH H 46 446 95 HOH HOH . G 6 HOH H 47 447 100 HOH HOH . G 6 HOH H 48 448 101 HOH HOH . G 6 HOH H 49 449 102 HOH HOH . G 6 HOH H 50 450 108 HOH HOH . G 6 HOH H 51 451 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 5 77.63 -9.251 34.019 1 47.21 ? S SO4 301 H 1 HETATM 2 O O1 SO4 . . . E 5 78.111 -8.213 33.077 1 36.79 ? O1 SO4 301 H 1 HETATM 3 O O2 SO4 . . . E 5 76.581 -10.125 33.347 1 38.97 ? O2 SO4 301 H 1 HETATM 4 O O3 SO4 . . . E 5 78.778 -10.168 34.349 1 49.34 ? O3 SO4 301 H 1 HETATM 5 O O4 SO4 . . . E 5 77.109 -8.594 35.244 1 27.91 ? O4 SO4 301 H 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #