data_3VG5 # _model_server_result.job_id GRJxivfy4cfPVQKtifjYnA _model_server_result.datetime_utc '2025-04-13 00:45:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":151}' # _entry.id 3VG5 # _exptl.entry_id 3VG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VG5 _cell.length_a 30.293 _cell.length_b 57.122 _cell.length_c 74.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 5 A SER 2 1_555 D BA BA . A BA 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc2 A OG1 THR 84 A THR 81 1_555 E BA BA . A BA 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc3 A OD1 ASN 92 A ASN 89 1_555 D BA BA . A BA 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc4 A O THR 97 A THR 94 1_555 E BA BA . A BA 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc5 D BA BA . A BA 130 1_555 F O HOH . A HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.367 ? metalc ? metalc6 D BA BA . A BA 130 1_555 F O HOH . A HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc7 D BA BA . A BA 130 1_555 F O HOH . A HOH 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc8 E BA BA . A BA 131 1_555 F O HOH . A HOH 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc9 E BA BA . A BA 131 1_555 F O HOH . A HOH 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc10 E BA BA . A BA 131 1_555 F O HOH . A HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 260 n n C1 O2 PLM doub 261 n n C1 C2 PLM sing 262 n n O1 H PLM sing 263 n n C2 C3 PLM sing 264 n n C2 H21 PLM sing 265 n n C2 H22 PLM sing 266 n n C3 C4 PLM sing 267 n n C3 H31 PLM sing 268 n n C3 H32 PLM sing 269 n n C4 C5 PLM sing 270 n n C4 H41 PLM sing 271 n n C4 H42 PLM sing 272 n n C5 C6 PLM sing 273 n n C5 H51 PLM sing 274 n n C5 H52 PLM sing 275 n n C6 C7 PLM sing 276 n n C6 H61 PLM sing 277 n n C6 H62 PLM sing 278 n n C7 C8 PLM sing 279 n n C7 H71 PLM sing 280 n n C7 H72 PLM sing 281 n n C8 C9 PLM sing 282 n n C8 H81 PLM sing 283 n n C8 H82 PLM sing 284 n n C9 CA PLM sing 285 n n C9 H91 PLM sing 286 n n C9 H92 PLM sing 287 n n CA CB PLM sing 288 n n CA HA1 PLM sing 289 n n CA HA2 PLM sing 290 n n CB CC PLM sing 291 n n CB HB1 PLM sing 292 n n CB HB2 PLM sing 293 n n CC CD PLM sing 294 n n CC HC1 PLM sing 295 n n CC HC2 PLM sing 296 n n CD CE PLM sing 297 n n CD HD1 PLM sing 298 n n CD HD2 PLM sing 299 n n CE CF PLM sing 300 n n CE HE1 PLM sing 301 n n CE HE2 PLM sing 302 n n CF CG PLM sing 303 n n CF HF1 PLM sing 304 n n CF HF2 PLM sing 305 n n CG HG1 PLM sing 306 n n CG HG2 PLM sing 307 n n CG HG3 PLM sing 308 n n # _atom_sites.entry_id 3VG5 _atom_sites.fract_transf_matrix[1][1] 0.033011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 150 150 PLM PLM . C 2 PLM A 1 151 151 PLM PLM . D 3 BA A 1 130 1 BA BA . E 3 BA A 1 131 2 BA BA . F 4 HOH A 1 132 132 HOH HOH . F 4 HOH A 2 133 133 HOH HOH . F 4 HOH A 3 134 134 HOH HOH . F 4 HOH A 4 135 135 HOH HOH . F 4 HOH A 5 136 136 HOH HOH . F 4 HOH A 6 137 137 HOH HOH . F 4 HOH A 7 138 138 HOH HOH . F 4 HOH A 8 139 139 HOH HOH . F 4 HOH A 9 140 140 HOH HOH . F 4 HOH A 10 141 141 HOH HOH . F 4 HOH A 11 142 142 HOH HOH . F 4 HOH A 12 143 143 HOH HOH . F 4 HOH A 13 144 144 HOH HOH . F 4 HOH A 14 145 145 HOH HOH . F 4 HOH A 15 146 146 HOH HOH . F 4 HOH A 16 147 147 HOH HOH . F 4 HOH A 17 148 148 HOH HOH . F 4 HOH A 18 149 149 HOH HOH . F 4 HOH A 19 152 152 HOH HOH . F 4 HOH A 20 153 153 HOH HOH . F 4 HOH A 21 154 154 HOH HOH . F 4 HOH A 22 155 155 HOH HOH . F 4 HOH A 23 156 156 HOH HOH . F 4 HOH A 24 157 157 HOH HOH . F 4 HOH A 25 158 158 HOH HOH . F 4 HOH A 26 159 159 HOH HOH . F 4 HOH A 27 160 1 HOH HOH . F 4 HOH A 28 161 2 HOH HOH . F 4 HOH A 29 162 3 HOH HOH . F 4 HOH A 30 163 4 HOH HOH . F 4 HOH A 31 164 5 HOH HOH . F 4 HOH A 32 165 6 HOH HOH . F 4 HOH A 33 166 7 HOH HOH . F 4 HOH A 34 167 8 HOH HOH . F 4 HOH A 35 168 9 HOH HOH . F 4 HOH A 36 169 10 HOH HOH . F 4 HOH A 37 170 11 HOH HOH . F 4 HOH A 38 171 12 HOH HOH . F 4 HOH A 39 172 13 HOH HOH . F 4 HOH A 40 173 14 HOH HOH . F 4 HOH A 41 174 15 HOH HOH . F 4 HOH A 42 175 16 HOH HOH . F 4 HOH A 43 176 17 HOH HOH . F 4 HOH A 44 177 18 HOH HOH . F 4 HOH A 45 178 19 HOH HOH . F 4 HOH A 46 179 20 HOH HOH . F 4 HOH A 47 180 21 HOH HOH . F 4 HOH A 48 181 22 HOH HOH . F 4 HOH A 49 182 23 HOH HOH . F 4 HOH A 50 183 24 HOH HOH . F 4 HOH A 51 184 25 HOH HOH . F 4 HOH A 52 185 26 HOH HOH . F 4 HOH A 53 186 27 HOH HOH . F 4 HOH A 54 187 28 HOH HOH . F 4 HOH A 55 188 29 HOH HOH . F 4 HOH A 56 189 30 HOH HOH . F 4 HOH A 57 190 31 HOH HOH . F 4 HOH A 58 191 32 HOH HOH . F 4 HOH A 59 192 33 HOH HOH . F 4 HOH A 60 193 34 HOH HOH . F 4 HOH A 61 194 35 HOH HOH . F 4 HOH A 62 195 36 HOH HOH . F 4 HOH A 63 196 37 HOH HOH . F 4 HOH A 64 197 38 HOH HOH . F 4 HOH A 65 198 39 HOH HOH . F 4 HOH A 66 199 40 HOH HOH . F 4 HOH A 67 200 41 HOH HOH . F 4 HOH A 68 201 42 HOH HOH . F 4 HOH A 69 202 43 HOH HOH . F 4 HOH A 70 203 44 HOH HOH . F 4 HOH A 71 204 45 HOH HOH . F 4 HOH A 72 205 46 HOH HOH . F 4 HOH A 73 206 47 HOH HOH . F 4 HOH A 74 207 48 HOH HOH . F 4 HOH A 75 208 49 HOH HOH . F 4 HOH A 76 209 50 HOH HOH . F 4 HOH A 77 210 51 HOH HOH . F 4 HOH A 78 211 52 HOH HOH . F 4 HOH A 79 212 53 HOH HOH . F 4 HOH A 80 213 54 HOH HOH . F 4 HOH A 81 214 55 HOH HOH . F 4 HOH A 82 215 56 HOH HOH . F 4 HOH A 83 216 57 HOH HOH . F 4 HOH A 84 217 58 HOH HOH . F 4 HOH A 85 218 59 HOH HOH . F 4 HOH A 86 219 60 HOH HOH . F 4 HOH A 87 220 61 HOH HOH . F 4 HOH A 88 221 63 HOH HOH . F 4 HOH A 89 222 64 HOH HOH . F 4 HOH A 90 223 66 HOH HOH . F 4 HOH A 91 224 67 HOH HOH . F 4 HOH A 92 225 68 HOH HOH . F 4 HOH A 93 226 69 HOH HOH . F 4 HOH A 94 227 70 HOH HOH . F 4 HOH A 95 228 71 HOH HOH . F 4 HOH A 96 229 72 HOH HOH . F 4 HOH A 97 230 73 HOH HOH . F 4 HOH A 98 231 74 HOH HOH . F 4 HOH A 99 232 75 HOH HOH . F 4 HOH A 100 233 76 HOH HOH . F 4 HOH A 101 234 77 HOH HOH . F 4 HOH A 102 235 78 HOH HOH . F 4 HOH A 103 236 79 HOH HOH . F 4 HOH A 104 237 80 HOH HOH . F 4 HOH A 105 238 81 HOH HOH . F 4 HOH A 106 239 82 HOH HOH . F 4 HOH A 107 240 83 HOH HOH . F 4 HOH A 108 241 85 HOH HOH . F 4 HOH A 109 242 86 HOH HOH . F 4 HOH A 110 243 87 HOH HOH . F 4 HOH A 111 244 88 HOH HOH . F 4 HOH A 112 245 89 HOH HOH . F 4 HOH A 113 246 90 HOH HOH . F 4 HOH A 114 247 91 HOH HOH . F 4 HOH A 115 248 92 HOH HOH . F 4 HOH A 116 249 93 HOH HOH . F 4 HOH A 117 250 94 HOH HOH . F 4 HOH A 118 251 95 HOH HOH . F 4 HOH A 119 252 96 HOH HOH . F 4 HOH A 120 253 97 HOH HOH . F 4 HOH A 121 254 98 HOH HOH . F 4 HOH A 122 255 99 HOH HOH . F 4 HOH A 123 256 100 HOH HOH . F 4 HOH A 124 257 101 HOH HOH . F 4 HOH A 125 258 102 HOH HOH . F 4 HOH A 126 259 103 HOH HOH . F 4 HOH A 127 260 104 HOH HOH . F 4 HOH A 128 261 105 HOH HOH . F 4 HOH A 129 262 106 HOH HOH . F 4 HOH A 130 263 107 HOH HOH . F 4 HOH A 131 264 108 HOH HOH . F 4 HOH A 132 265 109 HOH HOH . F 4 HOH A 133 266 110 HOH HOH . F 4 HOH A 134 267 111 HOH HOH . F 4 HOH A 135 268 112 HOH HOH . F 4 HOH A 136 269 113 HOH HOH . F 4 HOH A 137 270 114 HOH HOH . F 4 HOH A 138 271 115 HOH HOH . F 4 HOH A 139 272 116 HOH HOH . F 4 HOH A 140 273 117 HOH HOH . F 4 HOH A 141 274 118 HOH HOH . F 4 HOH A 142 275 119 HOH HOH . F 4 HOH A 143 276 120 HOH HOH . F 4 HOH A 144 277 121 HOH HOH . F 4 HOH A 145 278 122 HOH HOH . F 4 HOH A 146 279 123 HOH HOH . F 4 HOH A 147 280 124 HOH HOH . F 4 HOH A 148 281 125 HOH HOH . F 4 HOH A 149 282 126 HOH HOH . F 4 HOH A 150 283 127 HOH HOH . F 4 HOH A 151 284 128 HOH HOH . F 4 HOH A 152 285 129 HOH HOH . F 4 HOH A 153 286 130 HOH HOH . F 4 HOH A 154 287 131 HOH HOH . F 4 HOH A 155 288 150 HOH HOH . F 4 HOH A 156 289 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . C 2 6.629 -8.813 -16.579 0.6 39.41 ? C1 PLM 151 A 1 HETATM 2 O O1 PLM . . . C 2 7.143 -9.649 -15.808 0.6 39.23 ? O1 PLM 151 A 1 HETATM 3 O O2 PLM . . . C 2 6.083 -7.806 -16.09 0.6 39.85 ? O2 PLM 151 A 1 HETATM 4 C C2 PLM . . . C 2 6.661 -9.012 -18.075 0.6 39.25 ? C2 PLM 151 A 1 HETATM 5 C C3 PLM . . . C 2 5.241 -9.274 -18.564 0.6 38.74 ? C3 PLM 151 A 1 HETATM 6 C C4 PLM . . . C 2 5.229 -9.791 -19.998 0.6 38.04 ? C4 PLM 151 A 1 HETATM 7 C C5 PLM . . . C 2 5.012 -8.651 -20.984 0.6 37.66 ? C5 PLM 151 A 1 HETATM 8 C C6 PLM . . . C 2 3.54 -8.48 -21.326 0.6 37.31 ? C6 PLM 151 A 1 HETATM 9 C C7 PLM . . . C 2 3.356 -8.505 -22.837 0.6 37.5 ? C7 PLM 151 A 1 HETATM 10 C C8 PLM . . . C 2 2.155 -9.357 -23.223 0.6 36.78 ? C8 PLM 151 A 1 HETATM 11 C C9 PLM . . . C 2 1.696 -8.988 -24.626 0.6 36.84 ? C9 PLM 151 A 1 HETATM 12 C CA PLM . . . C 2 0.218 -9.296 -24.814 0.6 36.78 ? CA PLM 151 A 1 HETATM 13 C CB PLM . . . C 2 -0.513 -8.09 -25.386 0.6 36.81 ? CB PLM 151 A 1 HETATM 14 C CC PLM . . . C 2 -1.921 -8.486 -25.815 0.6 36.79 ? CC PLM 151 A 1 HETATM 15 C CD PLM . . . C 2 -2.314 -7.789 -27.11 0.6 36.76 ? CD PLM 151 A 1 HETATM 16 C CE PLM . . . C 2 -3.353 -6.711 -26.844 0.6 37.08 ? CE PLM 151 A 1 HETATM 17 C CF PLM . . . C 2 -4.524 -6.817 -27.813 0.6 37.7 ? CF PLM 151 A 1 HETATM 18 C CG PLM . . . C 2 -5.766 -7.366 -27.123 0.6 37.89 ? CG PLM 151 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #