data_3VG6 # _model_server_result.job_id 7SqGXg-ndrbamV3H-Y_CCQ _model_server_result.datetime_utc '2024-11-26 04:17:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vg6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":133}' # _entry.id 3VG6 # _exptl.entry_id 3VG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VG6 _cell.length_a 30.216 _cell.length_b 57.24 _cell.length_c 74.491 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 5 A SER 2 1_555 E BA BA . A BA 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc2 A OG1 THR 84 A THR 81 1_555 D BA BA . A BA 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc3 A OD1 ASN 92 A ASN 89 1_555 E BA BA . A BA 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc4 A O THR 97 A THR 94 1_555 D BA BA . A BA 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc5 A OG1 THR 97 A THR 94 1_555 D BA BA . A BA 130 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.827 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VG6 _atom_sites.fract_transf_matrix[1][1] 0.033095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 150 150 PLM PLM . C 2 PLM A 1 151 151 PLM PLM . D 3 BA A 1 130 1 BA BA . E 3 BA A 1 131 2 BA BA . F 4 IOD A 1 132 1 IOD IOD . G 4 IOD A 1 133 3 IOD IOD . H 4 IOD A 1 134 4 IOD IOD . I 4 IOD A 1 135 5 IOD IOD . J 5 HOH A 1 136 1 HOH HOH . J 5 HOH A 2 137 2 HOH HOH . J 5 HOH A 3 138 3 HOH HOH . J 5 HOH A 4 139 4 HOH HOH . J 5 HOH A 5 140 5 HOH HOH . J 5 HOH A 6 141 6 HOH HOH . J 5 HOH A 7 142 7 HOH HOH . J 5 HOH A 8 143 8 HOH HOH . J 5 HOH A 9 144 9 HOH HOH . J 5 HOH A 10 145 10 HOH HOH . J 5 HOH A 11 146 11 HOH HOH . J 5 HOH A 12 147 12 HOH HOH . J 5 HOH A 13 148 13 HOH HOH . J 5 HOH A 14 149 14 HOH HOH . J 5 HOH A 15 152 15 HOH HOH . J 5 HOH A 16 153 16 HOH HOH . J 5 HOH A 17 154 17 HOH HOH . J 5 HOH A 18 155 18 HOH HOH . J 5 HOH A 19 156 19 HOH HOH . J 5 HOH A 20 157 20 HOH HOH . J 5 HOH A 21 158 21 HOH HOH . J 5 HOH A 22 159 22 HOH HOH . J 5 HOH A 23 160 23 HOH HOH . J 5 HOH A 24 161 24 HOH HOH . J 5 HOH A 25 162 25 HOH HOH . J 5 HOH A 26 163 26 HOH HOH . J 5 HOH A 27 164 27 HOH HOH . J 5 HOH A 28 165 28 HOH HOH . J 5 HOH A 29 166 29 HOH HOH . J 5 HOH A 30 167 30 HOH HOH . J 5 HOH A 31 168 31 HOH HOH . J 5 HOH A 32 169 32 HOH HOH . J 5 HOH A 33 170 33 HOH HOH . J 5 HOH A 34 171 34 HOH HOH . J 5 HOH A 35 172 35 HOH HOH . J 5 HOH A 36 173 36 HOH HOH . J 5 HOH A 37 174 37 HOH HOH . J 5 HOH A 38 175 38 HOH HOH . J 5 HOH A 39 176 39 HOH HOH . J 5 HOH A 40 177 40 HOH HOH . J 5 HOH A 41 178 41 HOH HOH . J 5 HOH A 42 179 42 HOH HOH . J 5 HOH A 43 180 43 HOH HOH . J 5 HOH A 44 181 44 HOH HOH . J 5 HOH A 45 182 45 HOH HOH . J 5 HOH A 46 183 46 HOH HOH . J 5 HOH A 47 184 47 HOH HOH . J 5 HOH A 48 185 48 HOH HOH . J 5 HOH A 49 186 49 HOH HOH . J 5 HOH A 50 187 50 HOH HOH . J 5 HOH A 51 188 51 HOH HOH . J 5 HOH A 52 189 52 HOH HOH . J 5 HOH A 53 190 53 HOH HOH . J 5 HOH A 54 191 54 HOH HOH . J 5 HOH A 55 192 55 HOH HOH . J 5 HOH A 56 193 56 HOH HOH . J 5 HOH A 57 194 57 HOH HOH . J 5 HOH A 58 195 58 HOH HOH . J 5 HOH A 59 196 59 HOH HOH . J 5 HOH A 60 197 61 HOH HOH . J 5 HOH A 61 198 62 HOH HOH . J 5 HOH A 62 199 63 HOH HOH . J 5 HOH A 63 200 64 HOH HOH . J 5 HOH A 64 201 65 HOH HOH . J 5 HOH A 65 202 66 HOH HOH . J 5 HOH A 66 203 67 HOH HOH . J 5 HOH A 67 204 68 HOH HOH . J 5 HOH A 68 205 69 HOH HOH . J 5 HOH A 69 206 70 HOH HOH . J 5 HOH A 70 207 71 HOH HOH . J 5 HOH A 71 208 72 HOH HOH . J 5 HOH A 72 209 73 HOH HOH . J 5 HOH A 73 210 74 HOH HOH . J 5 HOH A 74 211 75 HOH HOH . J 5 HOH A 75 212 76 HOH HOH . J 5 HOH A 76 213 78 HOH HOH . J 5 HOH A 77 214 79 HOH HOH . J 5 HOH A 78 215 80 HOH HOH . J 5 HOH A 79 216 81 HOH HOH . J 5 HOH A 80 217 82 HOH HOH . J 5 HOH A 81 218 83 HOH HOH . J 5 HOH A 82 219 84 HOH HOH . J 5 HOH A 83 220 85 HOH HOH . J 5 HOH A 84 221 86 HOH HOH . J 5 HOH A 85 222 87 HOH HOH . J 5 HOH A 86 223 88 HOH HOH . J 5 HOH A 87 224 89 HOH HOH . J 5 HOH A 88 225 90 HOH HOH . J 5 HOH A 89 226 91 HOH HOH . J 5 HOH A 90 227 92 HOH HOH . J 5 HOH A 91 228 93 HOH HOH . J 5 HOH A 92 229 94 HOH HOH . J 5 HOH A 93 230 95 HOH HOH . J 5 HOH A 94 231 96 HOH HOH . J 5 HOH A 95 232 97 HOH HOH . J 5 HOH A 96 233 98 HOH HOH . J 5 HOH A 97 234 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x -2.147 _atom_site.Cartn_y 4.689 _atom_site.Cartn_z 8.258 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 36.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 133 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #