data_3VG9
#
_model_server_result.job_id            VnlrlWaEdXg-SA9J3FNduw 
_model_server_result.datetime_utc      '2025-03-04 07:38:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vg9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":408}' 
#
_entry.id    3VG9 
#
_exptl.entry_id    3VG9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.1 
_cell.angle_gamma         90 
_cell.entry_id            3VG9 
_cell.length_a            121.18 
_cell.length_b            90.15 
_cell.length_c            113.55 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VG9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 71 A CYS 71 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 74 A CYS 74 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 77 A CYS 77 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
disulf ? disulf4 A SG CYS 259 A CYS 259 1_555 A SG CYS 262 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
disulf ? disulf5 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf7 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 C SG CYS 151 C CYS 151 1_555 C SG CYS 206 C CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 194 n n 
C1B O1B LMT sing 195 n n 
C1B O5B LMT sing 196 n n 
C1B H1B LMT sing 197 n n 
C2B C3B LMT sing 198 n n 
C2B O2B LMT sing 199 n n 
C2B H2B LMT sing 200 n n 
C3B C4B LMT sing 201 n n 
C3B O3B LMT sing 202 n n 
C3B H3B LMT sing 203 n n 
C4B C5B LMT sing 204 n n 
C4B O4' LMT sing 205 n n 
C4B H4B LMT sing 206 n n 
C5B C6B LMT sing 207 n n 
C5B O5B LMT sing 208 n n 
C5B H5B LMT sing 209 n n 
C6B O6B LMT sing 210 n n 
C6B "H6'2" LMT sing 211 n n 
C6B "H6'1" LMT sing 212 n n 
O1B C4' LMT sing 213 n n 
O2B H2O1 LMT sing 214 n n 
O3B H3O1 LMT sing 215 n n 
O4' H4O1 LMT sing 216 n n 
O6B H6B LMT sing 217 n n 
C1' C2' LMT sing 218 n n 
C1' O1' LMT sing 219 n n 
C1' O5' LMT sing 220 n n 
C1' H1' LMT sing 221 n n 
C2' C3' LMT sing 222 n n 
C2' O2' LMT sing 223 n n 
C2' H2' LMT sing 224 n n 
C3' C4' LMT sing 225 n n 
C3' O3' LMT sing 226 n n 
C3' H3' LMT sing 227 n n 
C4' C5' LMT sing 228 n n 
C4' H4' LMT sing 229 n n 
C5' C6' LMT sing 230 n n 
C5' O5' LMT sing 231 n n 
C5' H5' LMT sing 232 n n 
C6' O6' LMT sing 233 n n 
C6' H6D LMT sing 234 n n 
C6' H6E LMT sing 235 n n 
O1' C1 LMT sing 236 n n 
O2' H2O2 LMT sing 237 n n 
O3' H3O2 LMT sing 238 n n 
O6' H6' LMT sing 239 n n 
C1 C2 LMT sing 240 n n 
C1 H12 LMT sing 241 n n 
C1 H11 LMT sing 242 n n 
C2 C3 LMT sing 243 n n 
C2 H22 LMT sing 244 n n 
C2 H21 LMT sing 245 n n 
C3 C4 LMT sing 246 n n 
C3 H32 LMT sing 247 n n 
C3 H31 LMT sing 248 n n 
C4 C5 LMT sing 249 n n 
C4 H42 LMT sing 250 n n 
C4 H41 LMT sing 251 n n 
C5 C6 LMT sing 252 n n 
C5 H52 LMT sing 253 n n 
C5 H51 LMT sing 254 n n 
C6 C7 LMT sing 255 n n 
C6 H62 LMT sing 256 n n 
C6 H61 LMT sing 257 n n 
C7 C8 LMT sing 258 n n 
C7 H72 LMT sing 259 n n 
C7 H71 LMT sing 260 n n 
C8 C9 LMT sing 261 n n 
C8 H82 LMT sing 262 n n 
C8 H81 LMT sing 263 n n 
C9 C10 LMT sing 264 n n 
C9 H92 LMT sing 265 n n 
C9 H91 LMT sing 266 n n 
C10 C11 LMT sing 267 n n 
C10 H102 LMT sing 268 n n 
C10 H101 LMT sing 269 n n 
C11 C12 LMT sing 270 n n 
C11 H112 LMT sing 271 n n 
C11 H111 LMT sing 272 n n 
C12 H123 LMT sing 273 n n 
C12 H122 LMT sing 274 n n 
C12 H121 LMT sing 275 n n 
#
_atom_sites.entry_id                     3VG9 
_atom_sites.fract_transf_matrix[1][1]    0.008252 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001174 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011093 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZMA A 1 401 401 ZMA ZMA . 
E 5 STE A 1 402 402 STE STE . 
F 5 STE A 1 403 403 STE STE . 
G 5 STE A 1 404 404 STE STE . 
H 5 STE A 1 405 405 STE STE . 
I 5 STE A 1 406 406 STE STE . 
J 5 STE A 1 407 407 STE STE . 
K 6 LMT A 1 408 408 LMT LMT . 
L 7 HOH A 1 327 2 HOH HOH . 
L 7 HOH A 2 328 35 HOH HOH . 
L 7 HOH A 3 329 36 HOH HOH . 
L 7 HOH A 4 330 53 HOH HOH . 
L 7 HOH A 5 331 54 HOH HOH . 
L 7 HOH A 6 332 55 HOH HOH . 
L 7 HOH A 7 333 61 HOH HOH . 
M 7 HOH B 1 215 7 HOH HOH . 
M 7 HOH B 2 216 12 HOH HOH . 
M 7 HOH B 3 217 13 HOH HOH . 
M 7 HOH B 4 218 14 HOH HOH . 
M 7 HOH B 5 219 20 HOH HOH . 
M 7 HOH B 6 220 21 HOH HOH . 
M 7 HOH B 7 221 24 HOH HOH . 
M 7 HOH B 8 222 26 HOH HOH . 
M 7 HOH B 9 223 27 HOH HOH . 
M 7 HOH B 10 224 29 HOH HOH . 
M 7 HOH B 11 225 30 HOH HOH . 
M 7 HOH B 12 226 31 HOH HOH . 
M 7 HOH B 13 227 33 HOH HOH . 
M 7 HOH B 14 228 42 HOH HOH . 
M 7 HOH B 15 229 43 HOH HOH . 
M 7 HOH B 16 230 44 HOH HOH . 
M 7 HOH B 17 231 47 HOH HOH . 
M 7 HOH B 18 232 50 HOH HOH . 
M 7 HOH B 19 233 56 HOH HOH . 
M 7 HOH B 20 234 57 HOH HOH . 
M 7 HOH B 21 235 66 HOH HOH . 
M 7 HOH B 22 236 69 HOH HOH . 
M 7 HOH B 23 237 70 HOH HOH . 
M 7 HOH B 24 238 71 HOH HOH . 
N 7 HOH C 1 227 1 HOH HOH . 
N 7 HOH C 2 228 3 HOH HOH . 
N 7 HOH C 3 229 4 HOH HOH . 
N 7 HOH C 4 230 5 HOH HOH . 
N 7 HOH C 5 231 6 HOH HOH . 
N 7 HOH C 6 232 8 HOH HOH . 
N 7 HOH C 7 233 9 HOH HOH . 
N 7 HOH C 8 234 10 HOH HOH . 
N 7 HOH C 9 235 235 HOH HOH . 
N 7 HOH C 10 236 15 HOH HOH . 
N 7 HOH C 11 237 16 HOH HOH . 
N 7 HOH C 12 238 17 HOH HOH . 
N 7 HOH C 13 239 18 HOH HOH . 
N 7 HOH C 14 240 19 HOH HOH . 
N 7 HOH C 15 241 25 HOH HOH . 
N 7 HOH C 16 242 28 HOH HOH . 
N 7 HOH C 17 243 34 HOH HOH . 
N 7 HOH C 18 244 38 HOH HOH . 
N 7 HOH C 19 245 39 HOH HOH . 
N 7 HOH C 20 246 40 HOH HOH . 
N 7 HOH C 21 247 41 HOH HOH . 
N 7 HOH C 22 248 45 HOH HOH . 
N 7 HOH C 23 249 46 HOH HOH . 
N 7 HOH C 24 250 48 HOH HOH . 
N 7 HOH C 25 251 49 HOH HOH . 
N 7 HOH C 26 252 51 HOH HOH . 
N 7 HOH C 27 253 52 HOH HOH . 
N 7 HOH C 28 254 58 HOH HOH . 
N 7 HOH C 29 255 59 HOH HOH . 
N 7 HOH C 30 256 60 HOH HOH . 
N 7 HOH C 31 257 62 HOH HOH . 
N 7 HOH C 32 258 63 HOH HOH . 
N 7 HOH C 33 259 64 HOH HOH . 
N 7 HOH C 34 260 65 HOH HOH . 
N 7 HOH C 35 261 67 HOH HOH . 
N 7 HOH C 36 262 68 HOH HOH . 
N 7 HOH C 37 263 72 HOH HOH . 
N 7 HOH C 38 264 73 HOH HOH . 
N 7 HOH C 39 265 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . K 6 -33.098 -0.583 -45.583 1 157 ? C1B LMT 408 A 1 
HETATM 2 C C2B LMT . . . K 6 -32.188 0.207 -44.7 1 157.85 ? C2B LMT 408 A 1 
HETATM 3 C C3B LMT . . . K 6 -31.07 0.7 -45.416 1 158.2 ? C3B LMT 408 A 1 
HETATM 4 C C4B LMT . . . K 6 -30.346 -0.361 -46.131 1 157.57 ? C4B LMT 408 A 1 
HETATM 5 C C5B LMT . . . K 6 -31.252 -1.291 -46.92 1 157.36 ? C5B LMT 408 A 1 
HETATM 6 C C6B LMT . . . K 6 -30.454 -2.478 -47.422 1 156.03 ? C6B LMT 408 A 1 
HETATM 7 O O1B LMT . . . K 6 -33.683 0.255 -46.53 1 152.95 ? O1B LMT 408 A 1 
HETATM 8 O O2B LMT . . . K 6 -32.875 1.334 -44.186 1 157.24 ? O2B LMT 408 A 1 
HETATM 9 O O3B LMT . . . K 6 -30.166 1.289 -44.463 1 157.25 ? O3B LMT 408 A 1 
HETATM 10 O O4' LMT . . . K 6 -29.418 0.199 -47.055 1 156.2 ? O4' LMT 408 A 1 
HETATM 11 O O5B LMT . . . K 6 -32.363 -1.72 -46.2 1 158.05 ? O5B LMT 408 A 1 
HETATM 12 O O6B LMT . . . K 6 -31.154 -3.501 -48.096 1 156.41 ? O6B LMT 408 A 1 
HETATM 13 C C1' LMT . . . K 6 -37.731 0.001 -47.595 1 142.17 ? C1' LMT 408 A 1 
HETATM 14 C C2' LMT . . . K 6 -37.278 0.752 -46.375 1 141.97 ? C2' LMT 408 A 1 
HETATM 15 C C3' LMT . . . K 6 -35.902 1.079 -46.347 1 143.4 ? C3' LMT 408 A 1 
HETATM 16 C C4' LMT . . . K 6 -35.079 -0.067 -46.694 1 143.79 ? C4' LMT 408 A 1 
HETATM 17 C C5' LMT . . . K 6 -35.385 -0.464 -48.12 1 131.26 ? C5' LMT 408 A 1 
HETATM 18 C C6' LMT . . . K 6 -34.549 -1.621 -48.508 1 117.82 ? C6' LMT 408 A 1 
HETATM 19 O O1' LMT . . . K 6 -38.885 -0.78 -47.326 1 147.71 ? O1' LMT 408 A 1 
HETATM 20 O O2' LMT . . . K 6 -37.958 1.984 -46.353 1 139.72 ? O2' LMT 408 A 1 
HETATM 21 O O3' LMT . . . K 6 -35.642 1.483 -44.995 1 143.38 ? O3' LMT 408 A 1 
HETATM 22 O O5' LMT . . . K 6 -36.714 -0.84 -48.271 1 134.36 ? O5' LMT 408 A 1 
HETATM 23 O O6' LMT . . . K 6 -35.097 -2.534 -49.4 1 101.83 ? O6' LMT 408 A 1 
HETATM 24 C C1 LMT . . . K 6 -38.776 -1.915 -46.499 1 139.98 ? C1 LMT 408 A 1 
HETATM 25 C C2 LMT . . . K 6 -39.833 -3.033 -46.591 1 124.17 ? C2 LMT 408 A 1 
HETATM 26 C C3 LMT . . . K 6 -40.223 -3.532 -47.929 1 110.55 ? C3 LMT 408 A 1 
HETATM 27 C C4 LMT . . . K 6 -41.244 -4.689 -47.997 1 105.27 ? C4 LMT 408 A 1 
HETATM 28 C C5 LMT . . . K 6 -41.843 -5.027 -49.333 1 97.38 ? C5 LMT 408 A 1 
HETATM 29 C C6 LMT . . . K 6 -43.056 -5.978 -49.364 1 94.96 ? C6 LMT 408 A 1 
HETATM 30 C C7 LMT . . . K 6 -44.296 -5.503 -50.058 1 93.14 ? C7 LMT 408 A 1 
HETATM 31 C C8 LMT . . . K 6 -45.011 -6.478 -51.04 1 93.19 ? C8 LMT 408 A 1 
HETATM 32 C C9 LMT . . . K 6 -46.03 -5.865 -52.017 1 95.24 ? C9 LMT 408 A 1 
HETATM 33 C C10 LMT . . . K 6 -46.352 -6.613 -53.288 1 94.28 ? C10 LMT 408 A 1 
HETATM 34 C C11 LMT . . . K 6 -47.667 -6.287 -53.96 1 98.62 ? C11 LMT 408 A 1 
HETATM 35 C C12 LMT . . . K 6 -48.078 -7.056 -55.158 1 92.08 ? C12 LMT 408 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#