data_3VGA # _model_server_result.job_id eRug_OUkMBBLvaGKOLiMLg _model_server_result.datetime_utc '2024-12-22 02:20:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 3VGA # _exptl.entry_id 3VGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.336 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.14 _cell.angle_gamma 90 _cell.entry_id 3VGA _cell.length_a 120.313 _cell.length_b 89.766 _cell.length_c 110.682 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 71 A CYS 71 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 74 A CYS 74 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 77 A CYS 77 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 259 A CYS 259 1_555 A SG CYS 262 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 151 C CYS 151 1_555 C SG CYS 206 C CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C16 H15 N7 O2' _chem_comp.formula_weight 337.336 _chem_comp.id ZMA _chem_comp.mon_nstd_flag . _chem_comp.name 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C1 ZMA doub 376 n y C1 C2 ZMA sing 377 n y C1 H1 ZMA sing 378 n n C2 C3 ZMA doub 379 n y C2 H2 ZMA sing 380 n n C5 C3 ZMA sing 381 n y C3 O4 ZMA sing 382 n n O4 HO4 ZMA sing 383 n n C6 C5 ZMA doub 384 n y C5 H5 ZMA sing 385 n n C7 C6 ZMA sing 386 n y C6 H6 ZMA sing 387 n n C8 C7 ZMA sing 388 n n C9 C8 ZMA sing 389 n n C8 H8 ZMA sing 390 n n C8 H8A ZMA sing 391 n n N10 C9 ZMA sing 392 n n C9 H9 ZMA sing 393 n n C9 H9A ZMA sing 394 n n C11 N10 ZMA sing 395 n n N10 HN10 ZMA sing 396 n n N12 C11 ZMA doub 397 n y C11 N13 ZMA sing 398 n y C18 N12 ZMA sing 399 n y C14 N13 ZMA doub 400 n y N16 C14 ZMA sing 401 n y C14 N15 ZMA sing 402 n n N15 HN15 ZMA sing 403 n n N15 HN1A ZMA sing 404 n n N17 N16 ZMA sing 405 n y C18 N16 ZMA sing 406 n y C20 N17 ZMA doub 407 n y N19 C18 ZMA doub 408 n y C20 N19 ZMA sing 409 n y C21 C20 ZMA sing 410 n y C22 C21 ZMA doub 411 n y O25 C21 ZMA sing 412 n y C23 C22 ZMA sing 413 n y C22 H22 ZMA sing 414 n n C23 C24 ZMA doub 415 n y C23 H23 ZMA sing 416 n n C24 O25 ZMA sing 417 n y C24 H24 ZMA sing 418 n n # _atom_sites.entry_id 3VGA _atom_sites.fract_transf_matrix[1][1] 0.008312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000894 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZMA A 1 401 401 ZMA ZMA . E 5 HOH A 1 327 9 HOH HOH . E 5 HOH A 2 328 13 HOH HOH . F 5 HOH B 1 215 8 HOH HOH . F 5 HOH B 2 216 10 HOH HOH . F 5 HOH B 3 217 11 HOH HOH . F 5 HOH B 4 218 12 HOH HOH . F 5 HOH B 5 219 14 HOH HOH . G 5 HOH C 1 227 1 HOH HOH . G 5 HOH C 2 228 2 HOH HOH . G 5 HOH C 3 229 3 HOH HOH . G 5 HOH C 4 230 4 HOH HOH . G 5 HOH C 5 231 5 HOH HOH . G 5 HOH C 6 232 6 HOH HOH . G 5 HOH C 7 233 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZMA . . . D 4 81.654 -15.454 49.157 1 139.19 ? C1 ZMA 401 A 1 HETATM 2 C C2 ZMA . . . D 4 82.575 -15.576 50.188 1 143.64 ? C2 ZMA 401 A 1 HETATM 3 C C3 ZMA . . . D 4 82.264 -16.32 51.318 1 142.01 ? C3 ZMA 401 A 1 HETATM 4 O O4 ZMA . . . D 4 83.193 -16.434 52.336 1 140.82 ? O4 ZMA 401 A 1 HETATM 5 C C5 ZMA . . . D 4 81.018 -16.94 51.406 1 138.46 ? C5 ZMA 401 A 1 HETATM 6 C C6 ZMA . . . D 4 80.092 -16.82 50.375 1 133.24 ? C6 ZMA 401 A 1 HETATM 7 C C7 ZMA . . . D 4 80.414 -16.073 49.248 1 134.28 ? C7 ZMA 401 A 1 HETATM 8 C C8 ZMA . . . D 4 79.449 -15.921 48.126 1 128.91 ? C8 ZMA 401 A 1 HETATM 9 C C9 ZMA . . . D 4 79.523 -14.663 47.331 1 127.02 ? C9 ZMA 401 A 1 HETATM 10 N N10 ZMA . . . D 4 78.548 -14.461 46.299 1 127.42 ? N10 ZMA 401 A 1 HETATM 11 C C11 ZMA . . . D 4 77.487 -13.528 46.507 1 128.57 ? C11 ZMA 401 A 1 HETATM 12 N N12 ZMA . . . D 4 76.707 -13.123 45.484 1 123.83 ? N12 ZMA 401 A 1 HETATM 13 N N13 ZMA . . . D 4 77.281 -13.045 47.756 1 133.43 ? N13 ZMA 401 A 1 HETATM 14 C C14 ZMA . . . D 4 76.295 -12.165 47.988 1 130.4 ? C14 ZMA 401 A 1 HETATM 15 N N15 ZMA . . . D 4 76.084 -11.663 49.314 1 129.35 ? N15 ZMA 401 A 1 HETATM 16 N N16 ZMA . . . D 4 75.491 -11.749 46.94 1 128.25 ? N16 ZMA 401 A 1 HETATM 17 N N17 ZMA . . . D 4 74.435 -10.873 46.921 1 129.52 ? N17 ZMA 401 A 1 HETATM 18 C C18 ZMA . . . D 4 75.688 -12.211 45.722 1 125.53 ? C18 ZMA 401 A 1 HETATM 19 N N19 ZMA . . . D 4 74.727 -11.62 44.878 1 125.08 ? N19 ZMA 401 A 1 HETATM 20 C C20 ZMA . . . D 4 73.966 -10.79 45.67 1 129.49 ? C20 ZMA 401 A 1 HETATM 21 C C21 ZMA . . . D 4 72.82 -9.93 45.241 1 136.92 ? C21 ZMA 401 A 1 HETATM 22 C C22 ZMA . . . D 4 72.764 -9.134 44.102 1 138.45 ? C22 ZMA 401 A 1 HETATM 23 C C23 ZMA . . . D 4 71.518 -8.502 44.1 1 135.45 ? C23 ZMA 401 A 1 HETATM 24 C C24 ZMA . . . D 4 70.845 -8.921 45.24 1 136.19 ? C24 ZMA 401 A 1 HETATM 25 O O25 ZMA . . . D 4 71.657 -9.767 45.892 1 139.1 ? O25 ZMA 401 A 1 # _model_server_stats.io_time_ms 163 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #