data_3VGC # _model_server_result.job_id '_VFlkb7uM5VtEwJidtaMQw' _model_server_result.datetime_utc '2025-03-03 13:11:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":356}' # _entry.id 3VGC # _exptl.entry_id 3VGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VGC _cell.length_a 69.895 _cell.length_b 69.895 _cell.length_c 97.142 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 A,H 3 3,4 B,C,D,E,F,G,I,J 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 69.895 0 0 3 'crystal symmetry operation' 5_545 -x+1/2,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 34.9475 -34.9475 48.571 4 'crystal symmetry operation' 6_555 x+1/2,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 34.9475 34.9475 48.571 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 1 1_555 B SG CYS 107 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 B SG CYS 27 B CYS 42 1_555 B SG CYS 43 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? disulf ? disulf3 B SG CYS 121 B CYS 136 1_555 C SG CYS 53 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? disulf ? disulf4 C SG CYS 20 C CYS 168 1_555 C SG CYS 34 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? disulf ? disulf5 C SG CYS 43 C CYS 191 1_555 C SG CYS 72 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? covale ? covale1 C OG SER 47 C SER 195 1_555 G B SRB . C SRB 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 3VGC _atom_sites.fract_transf_matrix[1][1] 0.014307 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 B 1 356 356 SO4 SO4 . E 4 SO4 B 1 358 358 SO4 SO4 . F 4 SO4 C 1 357 357 SO4 SO4 . G 5 SRB C 1 358 195 SRB SRB . H 6 HOH A 1 246 246 HOH HOH . H 6 HOH A 2 286 286 HOH HOH . H 6 HOH A 3 289 289 HOH HOH . H 6 HOH A 4 300 300 HOH HOH . H 6 HOH A 5 323 323 HOH HOH . H 6 HOH A 6 330 330 HOH HOH . H 6 HOH A 7 334 334 HOH HOH . H 6 HOH A 8 335 335 HOH HOH . H 6 HOH A 9 336 336 HOH HOH . I 6 HOH B 1 247 247 HOH HOH . I 6 HOH B 2 248 248 HOH HOH . I 6 HOH B 3 254 254 HOH HOH . I 6 HOH B 4 255 255 HOH HOH . I 6 HOH B 5 257 257 HOH HOH . I 6 HOH B 6 260 260 HOH HOH . I 6 HOH B 7 261 261 HOH HOH . I 6 HOH B 8 262 262 HOH HOH . I 6 HOH B 9 263 263 HOH HOH . I 6 HOH B 10 265 265 HOH HOH . I 6 HOH B 11 266 266 HOH HOH . I 6 HOH B 12 268 268 HOH HOH . I 6 HOH B 13 273 273 HOH HOH . I 6 HOH B 14 276 276 HOH HOH . I 6 HOH B 15 277 277 HOH HOH . I 6 HOH B 16 279 279 HOH HOH . I 6 HOH B 17 280 280 HOH HOH . I 6 HOH B 18 282 282 HOH HOH . I 6 HOH B 19 283 283 HOH HOH . I 6 HOH B 20 285 285 HOH HOH . I 6 HOH B 21 287 287 HOH HOH . I 6 HOH B 22 288 288 HOH HOH . I 6 HOH B 23 294 294 HOH HOH . I 6 HOH B 24 295 295 HOH HOH . I 6 HOH B 25 296 296 HOH HOH . I 6 HOH B 26 297 297 HOH HOH . I 6 HOH B 27 298 298 HOH HOH . I 6 HOH B 28 299 299 HOH HOH . I 6 HOH B 29 301 301 HOH HOH . I 6 HOH B 30 302 302 HOH HOH . I 6 HOH B 31 303 303 HOH HOH . I 6 HOH B 32 304 304 HOH HOH . I 6 HOH B 33 306 306 HOH HOH . I 6 HOH B 34 307 307 HOH HOH . I 6 HOH B 35 312 312 HOH HOH . I 6 HOH B 36 313 313 HOH HOH . I 6 HOH B 37 317 317 HOH HOH . I 6 HOH B 38 318 318 HOH HOH . I 6 HOH B 39 319 319 HOH HOH . I 6 HOH B 40 324 324 HOH HOH . I 6 HOH B 41 325 325 HOH HOH . I 6 HOH B 42 329 329 HOH HOH . I 6 HOH B 43 331 331 HOH HOH . I 6 HOH B 44 332 332 HOH HOH . I 6 HOH B 45 338 338 HOH HOH . I 6 HOH B 46 339 339 HOH HOH . I 6 HOH B 47 340 340 HOH HOH . I 6 HOH B 48 341 341 HOH HOH . J 6 HOH C 1 249 249 HOH HOH . J 6 HOH C 2 250 250 HOH HOH . J 6 HOH C 3 251 251 HOH HOH . J 6 HOH C 4 252 252 HOH HOH . J 6 HOH C 5 253 253 HOH HOH . J 6 HOH C 6 256 256 HOH HOH . J 6 HOH C 7 258 258 HOH HOH . J 6 HOH C 8 259 259 HOH HOH . J 6 HOH C 9 264 264 HOH HOH . J 6 HOH C 10 267 267 HOH HOH . J 6 HOH C 11 269 269 HOH HOH . J 6 HOH C 12 270 270 HOH HOH . J 6 HOH C 13 271 271 HOH HOH . J 6 HOH C 14 272 272 HOH HOH . J 6 HOH C 15 274 274 HOH HOH . J 6 HOH C 16 275 275 HOH HOH . J 6 HOH C 17 278 278 HOH HOH . J 6 HOH C 18 281 281 HOH HOH . J 6 HOH C 19 284 284 HOH HOH . J 6 HOH C 20 290 290 HOH HOH . J 6 HOH C 21 291 291 HOH HOH . J 6 HOH C 22 292 292 HOH HOH . J 6 HOH C 23 293 293 HOH HOH . J 6 HOH C 24 305 305 HOH HOH . J 6 HOH C 25 308 308 HOH HOH . J 6 HOH C 26 309 309 HOH HOH . J 6 HOH C 27 310 310 HOH HOH . J 6 HOH C 28 311 311 HOH HOH . J 6 HOH C 29 314 314 HOH HOH . J 6 HOH C 30 315 315 HOH HOH . J 6 HOH C 31 316 316 HOH HOH . J 6 HOH C 32 320 320 HOH HOH . J 6 HOH C 33 321 321 HOH HOH . J 6 HOH C 34 322 322 HOH HOH . J 6 HOH C 35 326 326 HOH HOH . J 6 HOH C 36 327 327 HOH HOH . J 6 HOH C 37 328 328 HOH HOH . J 6 HOH C 38 333 333 HOH HOH . J 6 HOH C 39 337 337 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 4 3.826 8.642 17.307 1 134.57 ? S SO4 356 B 1 HETATM 2 O O1 SO4 . . . D 4 4.343 9.997 17.268 1 133.98 ? O1 SO4 356 B 1 HETATM 3 O O2 SO4 . . . D 4 4.371 7.847 16.229 1 134.09 ? O2 SO4 356 B 1 HETATM 4 O O3 SO4 . . . D 4 4.159 8.039 18.587 1 133.98 ? O3 SO4 356 B 1 HETATM 5 O O4 SO4 . . . D 4 2.397 8.669 17.147 1 134.11 ? O4 SO4 356 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 5 #