data_3VGN
#
_model_server_result.job_id            aHzfSUOqyRktjqTPQ4yVVQ 
_model_server_result.datetime_utc      '2025-07-09 14:02:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vgn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":140}' 
#
_entry.id    3VGN 
#
_exptl.entry_id    3VGN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              157.099 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-fluoro-4-nitrophenol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VGN 
_cell.length_a            35.483 
_cell.length_b            72.315 
_cell.length_c            95.282 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VGN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C6 H4 F N O3' 
_chem_comp.formula_weight    157.099 
_chem_comp.id                FNN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-fluoro-4-nitrophenol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F C3 FNN sing 83 n n 
N O1 FNN sing 84 n n 
N O2 FNN doub 85 n n 
N C4 FNN sing 86 n n 
O C1 FNN sing 87 n n 
C1 C2 FNN doub 88 n y 
C1 C6 FNN sing 89 n y 
C2 C3 FNN sing 90 n y 
C3 C4 FNN doub 91 n y 
C4 C5 FNN sing 92 n y 
C5 C6 FNN doub 93 n y 
O HO FNN sing 94 n n 
C2 H2 FNN sing 95 n n 
C5 H5 FNN sing 96 n n 
C6 H6 FNN sing 97 n n 
#
_atom_sites.entry_id                     3VGN 
_atom_sites.fract_transf_matrix[1][1]    0.028183 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013828 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010495 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FNN A 1 140 140 FNN FNN . 
D 2 FNN B 1 140 140 FNN FNN . 
E 3 HOH A 1 132 132 HOH HOH . 
E 3 HOH A 2 133 133 HOH HOH . 
E 3 HOH A 3 134 134 HOH HOH . 
E 3 HOH A 4 135 135 HOH HOH . 
E 3 HOH A 5 136 136 HOH HOH . 
E 3 HOH A 6 137 137 HOH HOH . 
E 3 HOH A 7 138 138 HOH HOH . 
E 3 HOH A 8 139 139 HOH HOH . 
E 3 HOH A 9 141 141 HOH HOH . 
E 3 HOH A 10 142 142 HOH HOH . 
E 3 HOH A 11 143 143 HOH HOH . 
E 3 HOH A 12 144 144 HOH HOH . 
E 3 HOH A 13 145 145 HOH HOH . 
E 3 HOH A 14 146 146 HOH HOH . 
E 3 HOH A 15 147 147 HOH HOH . 
E 3 HOH A 16 148 148 HOH HOH . 
E 3 HOH A 17 149 149 HOH HOH . 
E 3 HOH A 18 150 150 HOH HOH . 
E 3 HOH A 19 151 151 HOH HOH . 
E 3 HOH A 20 152 152 HOH HOH . 
E 3 HOH A 21 153 153 HOH HOH . 
E 3 HOH A 22 154 154 HOH HOH . 
E 3 HOH A 23 155 155 HOH HOH . 
E 3 HOH A 24 156 156 HOH HOH . 
E 3 HOH A 25 157 157 HOH HOH . 
E 3 HOH A 26 158 158 HOH HOH . 
E 3 HOH A 27 159 159 HOH HOH . 
E 3 HOH A 28 160 160 HOH HOH . 
E 3 HOH A 29 161 161 HOH HOH . 
E 3 HOH A 30 162 162 HOH HOH . 
E 3 HOH A 31 163 163 HOH HOH . 
E 3 HOH A 32 164 164 HOH HOH . 
E 3 HOH A 33 165 165 HOH HOH . 
E 3 HOH A 34 166 166 HOH HOH . 
E 3 HOH A 35 167 167 HOH HOH . 
E 3 HOH A 36 168 168 HOH HOH . 
E 3 HOH A 37 169 169 HOH HOH . 
E 3 HOH A 38 170 170 HOH HOH . 
E 3 HOH A 39 171 171 HOH HOH . 
E 3 HOH A 40 172 172 HOH HOH . 
E 3 HOH A 41 173 173 HOH HOH . 
E 3 HOH A 42 174 174 HOH HOH . 
E 3 HOH A 43 175 175 HOH HOH . 
E 3 HOH A 44 176 176 HOH HOH . 
E 3 HOH A 45 177 177 HOH HOH . 
E 3 HOH A 46 178 178 HOH HOH . 
E 3 HOH A 47 179 179 HOH HOH . 
E 3 HOH A 48 180 180 HOH HOH . 
E 3 HOH A 49 181 181 HOH HOH . 
E 3 HOH A 50 182 182 HOH HOH . 
E 3 HOH A 51 183 183 HOH HOH . 
E 3 HOH A 52 184 184 HOH HOH . 
E 3 HOH A 53 185 185 HOH HOH . 
E 3 HOH A 54 186 186 HOH HOH . 
E 3 HOH A 55 187 187 HOH HOH . 
E 3 HOH A 56 188 188 HOH HOH . 
E 3 HOH A 57 189 189 HOH HOH . 
E 3 HOH A 58 190 190 HOH HOH . 
E 3 HOH A 59 191 191 HOH HOH . 
E 3 HOH A 60 192 192 HOH HOH . 
E 3 HOH A 61 193 193 HOH HOH . 
E 3 HOH A 62 194 194 HOH HOH . 
E 3 HOH A 63 195 195 HOH HOH . 
E 3 HOH A 64 196 196 HOH HOH . 
E 3 HOH A 65 197 197 HOH HOH . 
E 3 HOH A 66 198 198 HOH HOH . 
E 3 HOH A 67 199 199 HOH HOH . 
E 3 HOH A 68 200 200 HOH HOH . 
E 3 HOH A 69 201 201 HOH HOH . 
E 3 HOH A 70 202 202 HOH HOH . 
E 3 HOH A 71 203 203 HOH HOH . 
E 3 HOH A 72 204 204 HOH HOH . 
E 3 HOH A 73 205 205 HOH HOH . 
E 3 HOH A 74 206 206 HOH HOH . 
E 3 HOH A 75 207 207 HOH HOH . 
E 3 HOH A 76 208 208 HOH HOH . 
E 3 HOH A 77 209 209 HOH HOH . 
E 3 HOH A 78 210 210 HOH HOH . 
E 3 HOH A 79 211 211 HOH HOH . 
E 3 HOH A 80 212 212 HOH HOH . 
E 3 HOH A 81 213 213 HOH HOH . 
E 3 HOH A 82 214 214 HOH HOH . 
E 3 HOH A 83 215 215 HOH HOH . 
E 3 HOH A 84 216 216 HOH HOH . 
E 3 HOH A 85 217 217 HOH HOH . 
E 3 HOH A 86 218 218 HOH HOH . 
E 3 HOH A 87 219 219 HOH HOH . 
E 3 HOH A 88 220 220 HOH HOH . 
E 3 HOH A 89 221 221 HOH HOH . 
E 3 HOH A 90 222 222 HOH HOH . 
E 3 HOH A 91 223 223 HOH HOH . 
E 3 HOH A 92 224 224 HOH HOH . 
E 3 HOH A 93 225 225 HOH HOH . 
E 3 HOH A 94 226 226 HOH HOH . 
F 3 HOH B 1 132 132 HOH HOH . 
F 3 HOH B 2 133 133 HOH HOH . 
F 3 HOH B 3 134 134 HOH HOH . 
F 3 HOH B 4 135 135 HOH HOH . 
F 3 HOH B 5 136 136 HOH HOH . 
F 3 HOH B 6 137 137 HOH HOH . 
F 3 HOH B 7 138 138 HOH HOH . 
F 3 HOH B 8 139 139 HOH HOH . 
F 3 HOH B 9 141 141 HOH HOH . 
F 3 HOH B 10 142 142 HOH HOH . 
F 3 HOH B 11 143 143 HOH HOH . 
F 3 HOH B 12 144 144 HOH HOH . 
F 3 HOH B 13 145 145 HOH HOH . 
F 3 HOH B 14 146 146 HOH HOH . 
F 3 HOH B 15 147 147 HOH HOH . 
F 3 HOH B 16 148 148 HOH HOH . 
F 3 HOH B 17 149 149 HOH HOH . 
F 3 HOH B 18 150 150 HOH HOH . 
F 3 HOH B 19 151 151 HOH HOH . 
F 3 HOH B 20 152 152 HOH HOH . 
F 3 HOH B 21 153 153 HOH HOH . 
F 3 HOH B 22 154 154 HOH HOH . 
F 3 HOH B 23 155 155 HOH HOH . 
F 3 HOH B 24 156 156 HOH HOH . 
F 3 HOH B 25 157 157 HOH HOH . 
F 3 HOH B 26 158 158 HOH HOH . 
F 3 HOH B 27 159 159 HOH HOH . 
F 3 HOH B 28 160 160 HOH HOH . 
F 3 HOH B 29 161 161 HOH HOH . 
F 3 HOH B 30 162 162 HOH HOH . 
F 3 HOH B 31 163 163 HOH HOH . 
F 3 HOH B 32 164 164 HOH HOH . 
F 3 HOH B 33 165 165 HOH HOH . 
F 3 HOH B 34 166 166 HOH HOH . 
F 3 HOH B 35 167 167 HOH HOH . 
F 3 HOH B 36 168 168 HOH HOH . 
F 3 HOH B 37 169 169 HOH HOH . 
F 3 HOH B 38 170 170 HOH HOH . 
F 3 HOH B 39 171 171 HOH HOH . 
F 3 HOH B 40 172 172 HOH HOH . 
F 3 HOH B 41 173 173 HOH HOH . 
F 3 HOH B 42 174 174 HOH HOH . 
F 3 HOH B 43 175 175 HOH HOH . 
F 3 HOH B 44 176 176 HOH HOH . 
F 3 HOH B 45 177 177 HOH HOH . 
F 3 HOH B 46 178 178 HOH HOH . 
F 3 HOH B 47 179 179 HOH HOH . 
F 3 HOH B 48 180 180 HOH HOH . 
F 3 HOH B 49 181 181 HOH HOH . 
F 3 HOH B 50 182 182 HOH HOH . 
F 3 HOH B 51 183 183 HOH HOH . 
F 3 HOH B 52 184 184 HOH HOH . 
F 3 HOH B 53 185 185 HOH HOH . 
F 3 HOH B 54 186 186 HOH HOH . 
F 3 HOH B 55 187 187 HOH HOH . 
F 3 HOH B 56 188 188 HOH HOH . 
F 3 HOH B 57 189 189 HOH HOH . 
F 3 HOH B 58 190 190 HOH HOH . 
F 3 HOH B 59 191 191 HOH HOH . 
F 3 HOH B 60 192 192 HOH HOH . 
F 3 HOH B 61 193 193 HOH HOH . 
F 3 HOH B 62 194 194 HOH HOH . 
F 3 HOH B 63 195 195 HOH HOH . 
F 3 HOH B 64 196 196 HOH HOH . 
F 3 HOH B 65 197 197 HOH HOH . 
F 3 HOH B 66 198 198 HOH HOH . 
F 3 HOH B 67 199 199 HOH HOH . 
F 3 HOH B 68 200 200 HOH HOH . 
F 3 HOH B 69 201 201 HOH HOH . 
F 3 HOH B 70 202 202 HOH HOH . 
F 3 HOH B 71 203 203 HOH HOH . 
F 3 HOH B 72 204 204 HOH HOH . 
F 3 HOH B 73 205 205 HOH HOH . 
F 3 HOH B 74 206 206 HOH HOH . 
F 3 HOH B 75 207 207 HOH HOH . 
F 3 HOH B 76 208 208 HOH HOH . 
F 3 HOH B 77 209 209 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F FNN . . . D 2 2.047 -24.479 -37.179 1 35.03 ? F FNN 140 B 1 
HETATM 2 N N FNN . . . D 2 3.07 -26.363 -35.386 1 33.22 ? N FNN 140 B 1 
HETATM 3 O O FNN . . . D 2 4.595 -21.208 -35.133 1 15.38 ? O FNN 140 B 1 
HETATM 4 C C1 FNN . . . D 2 4.247 -22.48 -35.228 1 15.13 ? C1 FNN 140 B 1 
HETATM 5 O O1 FNN . . . D 2 3.949 -27.327 -34.824 1 30.99 ? O1 FNN 140 B 1 
HETATM 6 C C2 FNN . . . D 2 3.327 -22.812 -36.195 1 24.31 ? C2 FNN 140 B 1 
HETATM 7 O O2 FNN . . . D 2 1.81 -26.75 -35.934 1 33.85 ? O2 FNN 140 B 1 
HETATM 8 C C3 FNN . . . D 2 2.926 -24.132 -36.246 1 24.64 ? C3 FNN 140 B 1 
HETATM 9 C C4 FNN . . . D 2 3.443 -25.079 -35.36 1 25.94 ? C4 FNN 140 B 1 
HETATM 10 C C5 FNN . . . D 2 4.35 -24.738 -34.384 1 24.31 ? C5 FNN 140 B 1 
HETATM 11 C C6 FNN . . . D 2 4.714 -23.427 -34.299 1 17.95 ? C6 FNN 140 B 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           109 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           11 
#