data_3VHH # _model_server_result.job_id Gfk00QYnisrXPcInQoAKKA _model_server_result.datetime_utc '2024-11-15 18:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1127}' # _entry.id 3VHH # _exptl.entry_id 3VHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.64 _cell.angle_gamma 90 _cell.entry_id 3VHH _cell.length_a 129.967 _cell.length_b 73.51 _cell.length_c 81.473 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 K N N ? 4 N N N ? 4 O N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 C SG CYS 4 C CYS 4 1_555 C SG CYS 83 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 4 D CYS 4 1_555 D SG CYS 83 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 F C1 NAG . A NAG 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? covale ? covale2 B ND2 ASN 17 B ASN 17 1_555 J C1 NAG . B NAG 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale3 C ND2 ASN 17 C ASN 17 1_555 M C1 NAG . C NAG 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale4 D ND2 ASN 17 D ASN 17 1_555 Q C1 NAG . D NAG 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 3VHH _atom_sites.fract_transf_matrix[1][1] 0.007694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004378 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 VHH A 1 1124 1124 VHH DME . F 3 NAG A 1 1125 1125 NAG NAG . G 4 SO4 A 1 1126 1126 SO4 SO4 . H 4 SO4 A 1 1127 1127 SO4 SO4 . I 2 VHH B 1 1124 1124 VHH DME . J 3 NAG B 1 1125 1125 NAG NAG . K 4 SO4 B 1 1126 1126 SO4 SO4 . L 2 VHH C 1 1124 1124 VHH DME . M 3 NAG C 1 1125 1125 NAG NAG . N 4 SO4 C 1 1126 1126 SO4 SO4 . O 4 SO4 C 1 1127 1127 SO4 SO4 . P 2 VHH D 1 1124 1124 VHH DME . Q 3 NAG D 1 1125 1125 NAG NAG . R 4 SO4 D 1 1126 1126 SO4 SO4 . S 5 HOH A 1 124 124 HOH HOH . S 5 HOH A 2 125 125 HOH HOH . S 5 HOH A 3 126 3 HOH HOH . S 5 HOH A 4 127 13 HOH HOH . S 5 HOH A 5 128 14 HOH HOH . S 5 HOH A 6 129 15 HOH HOH . S 5 HOH A 7 130 16 HOH HOH . S 5 HOH A 8 131 17 HOH HOH . S 5 HOH A 9 132 132 HOH HOH . S 5 HOH A 10 133 21 HOH HOH . S 5 HOH A 11 134 22 HOH HOH . S 5 HOH A 12 135 23 HOH HOH . S 5 HOH A 13 136 24 HOH HOH . S 5 HOH A 14 137 25 HOH HOH . S 5 HOH A 15 138 32 HOH HOH . S 5 HOH A 16 139 33 HOH HOH . S 5 HOH A 17 140 34 HOH HOH . S 5 HOH A 18 141 35 HOH HOH . S 5 HOH A 19 142 36 HOH HOH . S 5 HOH A 20 143 37 HOH HOH . S 5 HOH A 21 144 42 HOH HOH . S 5 HOH A 22 145 43 HOH HOH . S 5 HOH A 23 146 46 HOH HOH . S 5 HOH A 24 147 47 HOH HOH . S 5 HOH A 25 148 48 HOH HOH . S 5 HOH A 26 149 51 HOH HOH . S 5 HOH A 27 150 57 HOH HOH . S 5 HOH A 28 151 58 HOH HOH . S 5 HOH A 29 152 59 HOH HOH . S 5 HOH A 30 153 61 HOH HOH . S 5 HOH A 31 154 123 HOH HOH . T 5 HOH B 1 124 19 HOH HOH . T 5 HOH B 2 125 27 HOH HOH . T 5 HOH B 3 126 126 HOH HOH . T 5 HOH B 4 127 28 HOH HOH . T 5 HOH B 5 128 29 HOH HOH . T 5 HOH B 6 129 30 HOH HOH . T 5 HOH B 7 130 44 HOH HOH . T 5 HOH B 8 131 45 HOH HOH . T 5 HOH B 9 132 49 HOH HOH . T 5 HOH B 10 133 50 HOH HOH . T 5 HOH B 11 134 52 HOH HOH . T 5 HOH B 12 135 53 HOH HOH . T 5 HOH B 13 136 54 HOH HOH . T 5 HOH B 14 137 55 HOH HOH . T 5 HOH B 15 138 56 HOH HOH . T 5 HOH B 16 139 63 HOH HOH . T 5 HOH B 17 140 65 HOH HOH . T 5 HOH B 18 141 66 HOH HOH . T 5 HOH B 19 142 67 HOH HOH . T 5 HOH B 20 143 69 HOH HOH . T 5 HOH B 21 144 70 HOH HOH . T 5 HOH B 22 145 71 HOH HOH . T 5 HOH B 23 146 72 HOH HOH . T 5 HOH B 24 147 73 HOH HOH . T 5 HOH B 25 148 74 HOH HOH . T 5 HOH B 26 149 77 HOH HOH . T 5 HOH B 27 150 78 HOH HOH . T 5 HOH B 28 151 83 HOH HOH . U 5 HOH C 1 124 1 HOH HOH . U 5 HOH C 2 125 2 HOH HOH . U 5 HOH C 3 126 4 HOH HOH . U 5 HOH C 4 127 127 HOH HOH . U 5 HOH C 5 128 128 HOH HOH . U 5 HOH C 6 129 129 HOH HOH . U 5 HOH C 7 130 5 HOH HOH . U 5 HOH C 8 131 6 HOH HOH . U 5 HOH C 9 132 7 HOH HOH . U 5 HOH C 10 133 133 HOH HOH . U 5 HOH C 11 134 10 HOH HOH . U 5 HOH C 12 135 11 HOH HOH . U 5 HOH C 13 136 12 HOH HOH . U 5 HOH C 14 137 41 HOH HOH . U 5 HOH C 15 138 75 HOH HOH . U 5 HOH C 16 139 82 HOH HOH . U 5 HOH C 17 140 86 HOH HOH . U 5 HOH C 18 141 87 HOH HOH . U 5 HOH C 19 142 95 HOH HOH . U 5 HOH C 20 143 98 HOH HOH . U 5 HOH C 21 144 100 HOH HOH . U 5 HOH C 22 145 101 HOH HOH . U 5 HOH C 23 146 104 HOH HOH . U 5 HOH C 24 147 105 HOH HOH . U 5 HOH C 25 148 106 HOH HOH . U 5 HOH C 26 149 107 HOH HOH . U 5 HOH C 27 150 108 HOH HOH . U 5 HOH C 28 151 109 HOH HOH . U 5 HOH C 29 152 112 HOH HOH . U 5 HOH C 30 153 113 HOH HOH . U 5 HOH C 31 154 114 HOH HOH . U 5 HOH C 32 155 115 HOH HOH . U 5 HOH C 33 156 117 HOH HOH . V 5 HOH D 1 124 9 HOH HOH . V 5 HOH D 2 125 18 HOH HOH . V 5 HOH D 3 126 20 HOH HOH . V 5 HOH D 4 127 26 HOH HOH . V 5 HOH D 5 128 38 HOH HOH . V 5 HOH D 6 129 39 HOH HOH . V 5 HOH D 7 130 130 HOH HOH . V 5 HOH D 8 131 131 HOH HOH . V 5 HOH D 9 132 40 HOH HOH . V 5 HOH D 10 133 76 HOH HOH . V 5 HOH D 11 134 79 HOH HOH . V 5 HOH D 12 135 80 HOH HOH . V 5 HOH D 13 136 81 HOH HOH . V 5 HOH D 14 137 88 HOH HOH . V 5 HOH D 15 138 89 HOH HOH . V 5 HOH D 16 139 90 HOH HOH . V 5 HOH D 17 140 91 HOH HOH . V 5 HOH D 18 141 92 HOH HOH . V 5 HOH D 19 142 94 HOH HOH . V 5 HOH D 20 143 96 HOH HOH . V 5 HOH D 21 144 97 HOH HOH . V 5 HOH D 22 145 99 HOH HOH . V 5 HOH D 23 146 102 HOH HOH . V 5 HOH D 24 147 103 HOH HOH . V 5 HOH D 25 148 110 HOH HOH . V 5 HOH D 26 149 111 HOH HOH . V 5 HOH D 27 150 118 HOH HOH . V 5 HOH D 28 151 119 HOH HOH . V 5 HOH D 29 152 120 HOH HOH . V 5 HOH D 30 153 121 HOH HOH . V 5 HOH D 31 154 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . O 4 32.228 -18.991 28.088 1 69.67 ? S SO4 1127 C 1 HETATM 2 O O1 SO4 . . . O 4 32.392 -17.724 28.8 1 66.66 ? O1 SO4 1127 C 1 HETATM 3 O O2 SO4 . . . O 4 31.196 -19.778 28.771 1 71.07 ? O2 SO4 1127 C 1 HETATM 4 O O3 SO4 . . . O 4 31.753 -18.71 26.73 1 70.34 ? O3 SO4 1127 C 1 HETATM 5 O O4 SO4 . . . O 4 33.453 -19.791 28.02 1 68.26 ? O4 SO4 1127 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #