data_3VHI # _model_server_result.job_id YtpFThHhYiUMt3wpbFIrnw _model_server_result.datetime_utc '2024-11-15 19:45:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vhi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1127}' # _entry.id 3VHI # _exptl.entry_id 3VHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.05 _cell.angle_gamma 90 _cell.entry_id 3VHI _cell.length_a 130.781 _cell.length_b 73.455 _cell.length_c 81.251 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 K N N ? 4 L N N ? 4 O N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 4 1_555 A SG CYS 82 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 3 B CYS 4 1_555 B SG CYS 82 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 C SG CYS 3 C CYS 4 1_555 C SG CYS 82 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf4 D SG CYS 3 D CYS 4 1_555 D SG CYS 82 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A ND2 ASN 16 A ASN 17 1_555 F C1 NAG . A NAG 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.704 ? covale ? covale2 B ND2 ASN 16 B ASN 17 1_555 J C1 NAG . B NAG 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? covale ? covale3 C ND2 ASN 16 C ASN 17 1_555 N C1 NAG . C NAG 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? covale ? covale4 D ND2 ASN 16 D ASN 17 1_555 Q C1 NAG . D NAG 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 3VHI _atom_sites.fract_transf_matrix[1][1] 0.007646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004424 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 VHI A 1 1124 1124 VHI BTZ . F 3 NAG A 1 1125 1125 NAG NAG . G 4 SO4 A 1 1126 1126 SO4 SO4 . H 4 SO4 A 1 1127 1127 SO4 SO4 . I 2 VHI B 1 1124 1124 VHI BTZ . J 3 NAG B 1 1125 1125 NAG NAG . K 4 SO4 B 1 1126 1126 SO4 SO4 . L 4 SO4 B 1 1127 1127 SO4 SO4 . M 2 VHI C 1 1124 1124 VHI BTZ . N 3 NAG C 1 1125 1125 NAG NAG . O 4 SO4 C 1 1127 1127 SO4 SO4 . P 2 VHI D 1 1124 1124 VHI BTZ . Q 3 NAG D 1 1125 1125 NAG NAG . R 4 SO4 D 1 1126 1126 SO4 SO4 . S 5 HOH A 1 124 6 HOH HOH . S 5 HOH A 2 125 12 HOH HOH . S 5 HOH A 3 126 126 HOH HOH . S 5 HOH A 4 127 13 HOH HOH . S 5 HOH A 5 128 20 HOH HOH . S 5 HOH A 6 129 25 HOH HOH . S 5 HOH A 7 130 32 HOH HOH . S 5 HOH A 8 131 131 HOH HOH . S 5 HOH A 9 132 46 HOH HOH . S 5 HOH A 10 133 48 HOH HOH . S 5 HOH A 11 134 51 HOH HOH . S 5 HOH A 12 135 63 HOH HOH . S 5 HOH A 13 136 68 HOH HOH . S 5 HOH A 14 137 70 HOH HOH . S 5 HOH A 15 138 138 HOH HOH . S 5 HOH A 16 139 71 HOH HOH . S 5 HOH A 17 140 74 HOH HOH . S 5 HOH A 18 141 75 HOH HOH . S 5 HOH A 19 142 142 HOH HOH . S 5 HOH A 20 143 79 HOH HOH . S 5 HOH A 21 144 81 HOH HOH . S 5 HOH A 22 145 84 HOH HOH . S 5 HOH A 23 146 146 HOH HOH . S 5 HOH A 24 147 86 HOH HOH . S 5 HOH A 25 148 88 HOH HOH . S 5 HOH A 26 149 149 HOH HOH . S 5 HOH A 27 150 89 HOH HOH . S 5 HOH A 28 151 90 HOH HOH . S 5 HOH A 29 152 94 HOH HOH . S 5 HOH A 30 153 104 HOH HOH . S 5 HOH A 31 154 109 HOH HOH . S 5 HOH A 32 155 111 HOH HOH . S 5 HOH A 33 156 121 HOH HOH . S 5 HOH A 34 159 159 HOH HOH . S 5 HOH A 35 168 168 HOH HOH . S 5 HOH A 36 172 172 HOH HOH . S 5 HOH A 37 173 173 HOH HOH . S 5 HOH A 38 179 179 HOH HOH . T 5 HOH B 1 124 5 HOH HOH . T 5 HOH B 2 125 7 HOH HOH . T 5 HOH B 3 126 9 HOH HOH . T 5 HOH B 4 127 10 HOH HOH . T 5 HOH B 5 128 128 HOH HOH . T 5 HOH B 6 129 129 HOH HOH . T 5 HOH B 7 130 130 HOH HOH . T 5 HOH B 8 131 18 HOH HOH . T 5 HOH B 9 132 19 HOH HOH . T 5 HOH B 10 133 24 HOH HOH . T 5 HOH B 11 134 26 HOH HOH . T 5 HOH B 12 135 33 HOH HOH . T 5 HOH B 13 136 35 HOH HOH . T 5 HOH B 14 137 36 HOH HOH . T 5 HOH B 15 138 38 HOH HOH . T 5 HOH B 16 139 40 HOH HOH . T 5 HOH B 17 140 41 HOH HOH . T 5 HOH B 18 141 55 HOH HOH . T 5 HOH B 19 142 56 HOH HOH . T 5 HOH B 20 143 143 HOH HOH . T 5 HOH B 21 144 57 HOH HOH . T 5 HOH B 22 145 145 HOH HOH . T 5 HOH B 23 146 58 HOH HOH . T 5 HOH B 24 147 62 HOH HOH . T 5 HOH B 25 148 148 HOH HOH . T 5 HOH B 26 149 67 HOH HOH . T 5 HOH B 27 150 85 HOH HOH . T 5 HOH B 28 151 100 HOH HOH . T 5 HOH B 29 152 152 HOH HOH . T 5 HOH B 30 153 101 HOH HOH . T 5 HOH B 31 154 102 HOH HOH . T 5 HOH B 32 155 103 HOH HOH . T 5 HOH B 33 156 105 HOH HOH . T 5 HOH B 34 157 107 HOH HOH . T 5 HOH B 35 158 158 HOH HOH . T 5 HOH B 36 159 112 HOH HOH . T 5 HOH B 37 160 113 HOH HOH . T 5 HOH B 38 161 120 HOH HOH . T 5 HOH B 39 162 123 HOH HOH . T 5 HOH B 40 164 164 HOH HOH . T 5 HOH B 41 165 165 HOH HOH . T 5 HOH B 42 166 166 HOH HOH . T 5 HOH B 43 167 167 HOH HOH . T 5 HOH B 44 176 176 HOH HOH . T 5 HOH B 45 177 177 HOH HOH . T 5 HOH B 46 178 178 HOH HOH . T 5 HOH B 47 180 180 HOH HOH . U 5 HOH C 1 1 1 HOH HOH . U 5 HOH C 2 124 124 HOH HOH . U 5 HOH C 3 125 16 HOH HOH . U 5 HOH C 4 126 22 HOH HOH . U 5 HOH C 5 127 127 HOH HOH . U 5 HOH C 6 128 23 HOH HOH . U 5 HOH C 7 129 28 HOH HOH . U 5 HOH C 8 130 31 HOH HOH . U 5 HOH C 9 131 39 HOH HOH . U 5 HOH C 10 132 43 HOH HOH . U 5 HOH C 11 133 44 HOH HOH . U 5 HOH C 12 134 134 HOH HOH . U 5 HOH C 13 135 49 HOH HOH . U 5 HOH C 14 136 136 HOH HOH . U 5 HOH C 15 137 50 HOH HOH . U 5 HOH C 16 138 52 HOH HOH . U 5 HOH C 17 139 54 HOH HOH . U 5 HOH C 18 140 140 HOH HOH . U 5 HOH C 19 141 141 HOH HOH . U 5 HOH C 20 142 59 HOH HOH . U 5 HOH C 21 143 60 HOH HOH . U 5 HOH C 22 144 64 HOH HOH . U 5 HOH C 23 145 65 HOH HOH . U 5 HOH C 24 146 66 HOH HOH . U 5 HOH C 25 147 147 HOH HOH . U 5 HOH C 26 148 73 HOH HOH . U 5 HOH C 27 149 76 HOH HOH . U 5 HOH C 28 150 78 HOH HOH . U 5 HOH C 29 151 80 HOH HOH . U 5 HOH C 30 152 82 HOH HOH . U 5 HOH C 31 153 95 HOH HOH . U 5 HOH C 32 154 154 HOH HOH . U 5 HOH C 33 155 98 HOH HOH . U 5 HOH C 34 156 156 HOH HOH . U 5 HOH C 35 157 157 HOH HOH . U 5 HOH C 36 158 106 HOH HOH . U 5 HOH C 37 159 115 HOH HOH . U 5 HOH C 38 160 116 HOH HOH . U 5 HOH C 39 161 161 HOH HOH . U 5 HOH C 40 162 162 HOH HOH . U 5 HOH C 41 163 117 HOH HOH . U 5 HOH C 42 164 118 HOH HOH . U 5 HOH C 43 165 119 HOH HOH . U 5 HOH C 44 166 122 HOH HOH . U 5 HOH C 45 171 171 HOH HOH . U 5 HOH C 46 174 174 HOH HOH . U 5 HOH C 47 181 181 HOH HOH . U 5 HOH C 48 182 182 HOH HOH . V 5 HOH D 1 124 2 HOH HOH . V 5 HOH D 2 125 125 HOH HOH . V 5 HOH D 3 126 3 HOH HOH . V 5 HOH D 4 127 4 HOH HOH . V 5 HOH D 5 128 8 HOH HOH . V 5 HOH D 6 129 11 HOH HOH . V 5 HOH D 7 130 14 HOH HOH . V 5 HOH D 8 131 15 HOH HOH . V 5 HOH D 9 132 17 HOH HOH . V 5 HOH D 10 133 133 HOH HOH . V 5 HOH D 11 134 21 HOH HOH . V 5 HOH D 12 135 27 HOH HOH . V 5 HOH D 13 136 29 HOH HOH . V 5 HOH D 14 137 137 HOH HOH . V 5 HOH D 15 138 30 HOH HOH . V 5 HOH D 16 139 139 HOH HOH . V 5 HOH D 17 140 34 HOH HOH . V 5 HOH D 18 141 37 HOH HOH . V 5 HOH D 19 142 42 HOH HOH . V 5 HOH D 20 143 53 HOH HOH . V 5 HOH D 21 144 61 HOH HOH . V 5 HOH D 22 145 69 HOH HOH . V 5 HOH D 23 146 72 HOH HOH . V 5 HOH D 24 147 77 HOH HOH . V 5 HOH D 25 148 83 HOH HOH . V 5 HOH D 26 149 87 HOH HOH . V 5 HOH D 27 150 150 HOH HOH . V 5 HOH D 28 151 151 HOH HOH . V 5 HOH D 29 152 91 HOH HOH . V 5 HOH D 30 153 153 HOH HOH . V 5 HOH D 31 154 92 HOH HOH . V 5 HOH D 32 155 155 HOH HOH . V 5 HOH D 33 156 93 HOH HOH . V 5 HOH D 34 157 96 HOH HOH . V 5 HOH D 35 158 108 HOH HOH . V 5 HOH D 36 160 160 HOH HOH . V 5 HOH D 37 161 110 HOH HOH . V 5 HOH D 38 162 114 HOH HOH . V 5 HOH D 39 163 163 HOH HOH . V 5 HOH D 40 169 169 HOH HOH . V 5 HOH D 41 170 170 HOH HOH . V 5 HOH D 42 175 175 HOH HOH . V 5 HOH D 43 183 183 HOH HOH . V 5 HOH D 44 184 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 4 -9.621 12.064 -14.636 1 63.87 ? S SO4 1127 A 1 HETATM 2 O O1 SO4 . . . H 4 -11.031 11.93 -14.226 1 60.72 ? O1 SO4 1127 A 1 HETATM 3 O O2 SO4 . . . H 4 -9.471 11.894 -16.089 1 63.71 ? O2 SO4 1127 A 1 HETATM 4 O O3 SO4 . . . H 4 -8.706 11.033 -14.136 1 60.04 ? O3 SO4 1127 A 1 HETATM 5 O O4 SO4 . . . H 4 -9.305 13.42 -14.156 1 60.93 ? O4 SO4 1127 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1052 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #