data_3VHS # _model_server_result.job_id IPfA-_oH0sr9wjRKyr9dNw _model_server_result.datetime_utc '2024-11-23 05:24:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vhs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":52}' # _entry.id 3VHS # _exptl.entry_id 3VHS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VHS _cell.length_a 36.482 _cell.length_b 73.457 _cell.length_c 34.651 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VHS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 39 1_555 B SG CYS 28 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A SG CYS 9 A CYS 20 1_555 C ZN ZN . A ZN 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A SG CYS 12 A CYS 23 1_555 C ZN ZN . A ZN 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 A O MET 15 A MET 26 1_555 F NA NA . B NA 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A NE2 HIS 20 A HIS 31 1_555 E ZN ZN . B ZN 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc5 A NE2 HIS 24 A HIS 35 1_555 C ZN ZN . A ZN 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc6 A O ASP 26 A ASP 37 1_555 D NA NA . A NA 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 A O LEU 29 A LEU 40 1_555 D NA NA . A NA 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc8 C ZN ZN . A ZN 51 1_555 G O HOH . A HOH 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc9 G O HOH . A HOH 69 1_555 F NA NA . B NA 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc10 B SG CYS 9 B CYS 20 1_555 E ZN ZN . B ZN 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc11 B SG CYS 12 B CYS 23 1_555 E ZN ZN . B ZN 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc12 B NE2 HIS 24 B HIS 35 1_555 E ZN ZN . B ZN 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc13 B OD2 ASP 26 B ASP 37 1_555 F NA NA . B NA 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc14 B OD1 ASP 26 B ASP 37 1_555 F NA NA . B NA 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc15 F NA NA . B NA 52 1_555 H O HOH . B HOH 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc16 F NA NA . B NA 52 1_555 H O HOH . B HOH 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VHS _atom_sites.fract_transf_matrix[1][1] 0.027411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 51 51 ZN ZN . D 3 NA A 1 52 52 NA NA . E 2 ZN B 1 51 51 ZN ZN . F 3 NA B 1 52 52 NA NA . G 4 HOH A 1 61 61 HOH HOH . G 4 HOH A 2 62 64 HOH HOH . G 4 HOH A 3 63 63 HOH HOH . G 4 HOH A 4 64 64 HOH HOH . G 4 HOH A 5 65 65 HOH HOH . G 4 HOH A 6 66 66 HOH HOH . G 4 HOH A 7 67 67 HOH HOH . G 4 HOH A 8 68 68 HOH HOH . G 4 HOH A 9 69 69 HOH HOH . G 4 HOH A 10 70 70 HOH HOH . G 4 HOH A 11 71 71 HOH HOH . G 4 HOH A 12 72 72 HOH HOH . H 4 HOH B 1 61 61 HOH HOH . H 4 HOH B 2 62 62 HOH HOH . H 4 HOH B 3 63 63 HOH HOH . H 4 HOH B 4 64 62 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 0 _atom_site.Cartn_y 32.462 _atom_site.Cartn_z -8.663 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 22.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 52 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #