data_3VHU # _model_server_result.job_id QpT1obb6rtK_SpvcP6p-ew _model_server_result.datetime_utc '2024-11-28 07:37:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vhu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 3VHU # _exptl.entry_id 3VHU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 416.573 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPIRONOLACTONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VHU _cell.length_a 91.526 _cell.length_b 171.509 _cell.length_c 42.358 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VHU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H32 O4 S' _chem_comp.formula_weight 416.573 _chem_comp.id SNL _chem_comp.mon_nstd_flag . _chem_comp.name SPIRONOLACTONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '17-HYDROXY-7ALPHA-MERCAPTO-3-OXO-17ALPHA-PREGN-4-ENE-21- CARBOXYLIC ACID;GAMMA-LACTONE ACETATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 SNL sing 290 n n C8 C9 SNL sing 291 n n C8 H81 SNL sing 292 n n C8 H82 SNL sing 293 n n C4 C5 SNL sing 294 n n C4 C3 SNL sing 295 n n C4 H41 SNL sing 296 n n C4 H42 SNL sing 297 n n C5 C6 SNL sing 298 n n C5 C9 SNL sing 299 n n C5 C10 SNL sing 300 n n C2 C1 SNL sing 301 n n C2 C11 SNL sing 302 n n C2 C20 SNL sing 303 n n C2 C24 SNL sing 304 n n C6 C7 SNL sing 305 n n C6 C23 SNL sing 306 n n C6 H6 SNL sing 307 n n C1 C12 SNL sing 308 n n C1 H11 SNL sing 309 n n C1 H12 SNL sing 310 n n C3 C24 SNL sing 311 n n C3 H31 SNL sing 312 n n C3 H32 SNL sing 313 n n C7 H71 SNL sing 314 n n C7 H72 SNL sing 315 n n C9 C13 SNL sing 316 n n C9 O58 SNL sing 317 n n C10 H101 SNL sing 318 n n C10 H102 SNL sing 319 n n C10 H103 SNL sing 320 n n C11 H111 SNL sing 321 n n C11 H112 SNL sing 322 n n C11 H113 SNL sing 323 n n C12 C18 SNL sing 324 n n C12 H121 SNL sing 325 n n C12 H122 SNL sing 326 n n C13 C14 SNL sing 327 n n C13 H131 SNL sing 328 n n C13 H132 SNL sing 329 n n C14 C15 SNL sing 330 n n C14 H141 SNL sing 331 n n C14 H142 SNL sing 332 n n C15 O57 SNL doub 333 n n C15 O58 SNL sing 334 n n C16 C17 SNL sing 335 n n C16 O59 SNL doub 336 n n C16 S61 SNL sing 337 n n C17 H171 SNL sing 338 n n C17 H172 SNL sing 339 n n C17 H173 SNL sing 340 n n C18 C19 SNL sing 341 n n C18 O60 SNL doub 342 n n C19 C20 SNL doub 343 n n C19 H19 SNL sing 344 n n C20 C21 SNL sing 345 n n C21 C22 SNL sing 346 n n C21 H211 SNL sing 347 n n C21 H212 SNL sing 348 n n C22 C23 SNL sing 349 n n C22 S61 SNL sing 350 n n C22 H22 SNL sing 351 n n C23 C24 SNL sing 352 n n C23 H23 SNL sing 353 n n C24 H24 SNL sing 354 n n # _atom_sites.entry_id 3VHU _atom_sites.fract_transf_matrix[1][1] 0.010926 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SNL A 1 1001 1001 SNL SNL . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 56 56 HOH HOH . C 3 HOH A 57 57 57 HOH HOH . C 3 HOH A 58 58 58 HOH HOH . C 3 HOH A 59 59 59 HOH HOH . C 3 HOH A 60 60 60 HOH HOH . C 3 HOH A 61 61 61 HOH HOH . C 3 HOH A 62 62 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 SNL . . . B 2 20.406 11.141 -0.749 1 30.61 ? C8 SNL 1001 A 1 HETATM 2 C C4 SNL . . . B 2 17.359 13.288 -0.194 1 30.76 ? C4 SNL 1001 A 1 HETATM 3 C C5 SNL . . . B 2 18.759 12.937 -0.675 1 39.27 ? C5 SNL 1001 A 1 HETATM 4 C C2 SNL . . . B 2 18.313 16.281 2.104 1 35.25 ? C2 SNL 1001 A 1 HETATM 5 C C6 SNL . . . B 2 19.655 12.991 0.553 1 35.09 ? C6 SNL 1001 A 1 HETATM 6 C C1 SNL . . . B 2 16.906 16.519 2.623 1 37.45 ? C1 SNL 1001 A 1 HETATM 7 C C3 SNL . . . B 2 17.346 14.682 0.402 1 28.7 ? C3 SNL 1001 A 1 HETATM 8 C C7 SNL . . . B 2 20.911 12.248 0.159 1 35.35 ? C7 SNL 1001 A 1 HETATM 9 C C9 SNL . . . B 2 18.973 11.499 -1.129 1 37.38 ? C9 SNL 1001 A 1 HETATM 10 C C10 SNL . . . B 2 19.193 13.88 -1.806 1 35.17 ? C10 SNL 1001 A 1 HETATM 11 C C11 SNL . . . B 2 18.66 17.323 1.051 1 32 ? C11 SNL 1001 A 1 HETATM 12 C C12 SNL . . . B 2 16.824 17.824 3.391 1 37.01 ? C12 SNL 1001 A 1 HETATM 13 C C13 SNL . . . B 2 17.943 10.556 -0.54 1 34.2 ? C13 SNL 1001 A 1 HETATM 14 C C14 SNL . . . B 2 16.954 10.323 -1.641 1 37.33 ? C14 SNL 1001 A 1 HETATM 15 C C15 SNL . . . B 2 17.671 10.822 -2.847 1 33.97 ? C15 SNL 1001 A 1 HETATM 16 C C16 SNL . . . B 2 21.598 13.135 4.709 1 51.2 ? C16 SNL 1001 A 1 HETATM 17 C C17 SNL . . . B 2 21.509 12.023 5.7 1 41.76 ? C17 SNL 1001 A 1 HETATM 18 C C18 SNL . . . B 2 17.807 17.804 4.513 1 40.28 ? C18 SNL 1001 A 1 HETATM 19 C C19 SNL . . . B 2 19.128 17.17 4.311 1 32.28 ? C19 SNL 1001 A 1 HETATM 20 C C20 SNL . . . B 2 19.329 16.463 3.189 1 39.24 ? C20 SNL 1001 A 1 HETATM 21 C C21 SNL . . . B 2 20.678 15.851 2.993 1 34.67 ? C21 SNL 1001 A 1 HETATM 22 C C22 SNL . . . B 2 20.681 14.46 2.375 1 30.71 ? C22 SNL 1001 A 1 HETATM 23 C C23 SNL . . . B 2 19.757 14.382 1.165 1 33.75 ? C23 SNL 1001 A 1 HETATM 24 C C24 SNL . . . B 2 18.346 14.847 1.551 1 30.66 ? C24 SNL 1001 A 1 HETATM 25 O O57 SNL . . . B 2 17.245 10.761 -3.98 1 33.35 ? O57 SNL 1001 A 1 HETATM 26 O O58 SNL . . . B 2 18.875 11.35 -2.53 1 38.51 ? O58 SNL 1001 A 1 HETATM 27 O O59 SNL . . . B 2 22.582 13.856 4.672 1 47.68 ? O59 SNL 1001 A 1 HETATM 28 O O60 SNL . . . B 2 17.568 18.357 5.573 1 40.33 ? O60 SNL 1001 A 1 HETATM 29 S S61 SNL . . . B 2 20.168 13.311 3.674 1 38.02 ? S61 SNL 1001 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #