data_3VHW # _model_server_result.job_id k96oS0o2agEiVIt5VrSIlQ _model_server_result.datetime_utc '2024-12-26 12:56:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vhw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3VHW # _exptl.entry_id 3VHW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 570.757 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (1S,3E)-3-{(2R)-2-[(1R,3aS,4E,7aR)-4-{(2Z)-2-[(3R,4S,5R)-3,5-dihydroxy-4-(3-hydroxypropoxy)-2-methylidenecyclohexylidene]ethylidene}-7a-methyloctahydro-1H-inden-1-yl]propylidene}-1-ethyl-2-oxocyclopentanecarboxylate (non-preferred name)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VHW _cell.length_a 44.975 _cell.length_b 51.47 _cell.length_c 131.264 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VHW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H50 O7' _chem_comp.formula_weight 570.757 _chem_comp.id VHW _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (1S,3E)-3-{(2R)-2-[(1R,3aS,4E,7aR)-4-{(2Z)-2-[(3R,4S,5R)-3,5-dihydroxy-4-(3-hydroxypropoxy)-2-methylidenecyclohexylidene]ethylidene}-7a-methyloctahydro-1H-inden-1-yl]propylidene}-1-ethyl-2-oxocyclopentanecarboxylate (non-preferred name)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 VHW sing 376 n n C1 C4 VHW sing 377 n n C2 C3 VHW sing 378 n n C3 C6 VHW sing 379 n n C3 C10 VHW doub 380 e n C4 C5 VHW sing 381 n n C5 C6 VHW sing 382 n n C5 C9 VHW sing 383 n n C5 C22 VHW sing 384 n n C6 C7 VHW sing 385 n n C7 C8 VHW sing 386 n n C8 C9 VHW sing 387 n n C9 C21 VHW sing 388 n n C10 C11 VHW sing 389 n n C11 C12 VHW doub 390 z n C12 C13 VHW sing 391 n n C12 C17 VHW sing 392 n n C13 C14 VHW sing 393 n n C14 C15 VHW sing 394 n n C14 O19 VHW sing 395 n n C15 C16 VHW sing 396 n n C15 O37 VHW sing 397 n n C16 C17 VHW sing 398 n n C16 O20 VHW sing 399 n n C17 C18 VHW doub 400 n n C21 C23 VHW sing 401 n n C21 C24 VHW sing 402 n n C23 C25 VHW doub 403 e n C25 C26 VHW sing 404 n n C25 C29 VHW sing 405 n n C26 C27 VHW sing 406 n n C27 C28 VHW sing 407 n n C28 C29 VHW sing 408 n n C28 C31 VHW sing 409 n n C28 C32 VHW sing 410 n n C29 O30 VHW doub 411 n n C31 C33 VHW sing 412 n n C32 O34 VHW sing 413 n n C32 O35 VHW doub 414 n n O34 C36 VHW sing 415 n n O37 C38 VHW sing 416 n n C38 C39 VHW sing 417 n n C39 C40 VHW sing 418 n n C40 O41 VHW sing 419 n n C1 H1 VHW sing 420 n n C1 H1A VHW sing 421 n n C2 H2 VHW sing 422 n n C2 H2A VHW sing 423 n n C4 H4 VHW sing 424 n n C4 H4A VHW sing 425 n n C6 H6 VHW sing 426 n n C7 H7 VHW sing 427 n n C7 H7A VHW sing 428 n n C8 H8 VHW sing 429 n n C8 H8A VHW sing 430 n n C9 H9 VHW sing 431 n n C10 H10 VHW sing 432 n n C11 H11 VHW sing 433 n n C13 H13 VHW sing 434 n n C13 H13A VHW sing 435 n n C14 H14 VHW sing 436 n n C15 H15 VHW sing 437 n n C16 H16 VHW sing 438 n n C18 H18 VHW sing 439 n n C18 H18A VHW sing 440 n n O19 HO19 VHW sing 441 n n O20 HO20 VHW sing 442 n n C21 H21 VHW sing 443 n n C22 H22 VHW sing 444 n n C22 H22A VHW sing 445 n n C22 H22B VHW sing 446 n n C23 H23 VHW sing 447 n n C24 H24 VHW sing 448 n n C24 H24A VHW sing 449 n n C24 H24B VHW sing 450 n n C26 H26 VHW sing 451 n n C26 H26A VHW sing 452 n n C27 H27 VHW sing 453 n n C27 H27A VHW sing 454 n n C31 H31 VHW sing 455 n n C31 H31A VHW sing 456 n n C33 H33 VHW sing 457 n n C33 H33A VHW sing 458 n n C33 H33B VHW sing 459 n n C36 H36 VHW sing 460 n n C36 H36A VHW sing 461 n n C36 H36B VHW sing 462 n n C38 H38 VHW sing 463 n n C38 H38A VHW sing 464 n n C39 H39 VHW sing 465 n n C39 H39A VHW sing 466 n n C40 H40 VHW sing 467 n n C40 H40A VHW sing 468 n n O41 HO41 VHW sing 469 n n # _atom_sites.entry_id 3VHW _atom_sites.fract_transf_matrix[1][1] 0.022235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VHW A 1 1 1 VHW MOL . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 46 46 HOH HOH . C 3 HOH A 46 47 47 HOH HOH . C 3 HOH A 47 48 48 HOH HOH . C 3 HOH A 48 49 49 HOH HOH . C 3 HOH A 49 50 50 HOH HOH . C 3 HOH A 50 51 51 HOH HOH . C 3 HOH A 51 52 52 HOH HOH . C 3 HOH A 52 53 53 HOH HOH . C 3 HOH A 53 54 54 HOH HOH . C 3 HOH A 54 55 55 HOH HOH . C 3 HOH A 55 56 56 HOH HOH . C 3 HOH A 56 57 57 HOH HOH . C 3 HOH A 57 58 58 HOH HOH . C 3 HOH A 58 59 59 HOH HOH . C 3 HOH A 59 60 60 HOH HOH . C 3 HOH A 60 61 61 HOH HOH . C 3 HOH A 61 62 62 HOH HOH . C 3 HOH A 62 63 63 HOH HOH . C 3 HOH A 63 64 64 HOH HOH . C 3 HOH A 64 65 65 HOH HOH . C 3 HOH A 65 66 66 HOH HOH . C 3 HOH A 66 67 67 HOH HOH . C 3 HOH A 67 68 68 HOH HOH . C 3 HOH A 68 69 69 HOH HOH . C 3 HOH A 69 70 70 HOH HOH . C 3 HOH A 70 71 71 HOH HOH . C 3 HOH A 71 72 72 HOH HOH . C 3 HOH A 72 73 73 HOH HOH . C 3 HOH A 73 74 74 HOH HOH . C 3 HOH A 74 75 75 HOH HOH . C 3 HOH A 75 76 76 HOH HOH . C 3 HOH A 76 77 77 HOH HOH . C 3 HOH A 77 78 78 HOH HOH . C 3 HOH A 78 79 79 HOH HOH . C 3 HOH A 79 80 80 HOH HOH . C 3 HOH A 80 81 81 HOH HOH . C 3 HOH A 81 82 82 HOH HOH . C 3 HOH A 82 83 83 HOH HOH . C 3 HOH A 83 84 84 HOH HOH . C 3 HOH A 84 85 85 HOH HOH . C 3 HOH A 85 86 86 HOH HOH . C 3 HOH A 86 87 87 HOH HOH . C 3 HOH A 87 88 88 HOH HOH . C 3 HOH A 88 89 89 HOH HOH . C 3 HOH A 89 90 90 HOH HOH . C 3 HOH A 90 91 91 HOH HOH . C 3 HOH A 91 92 92 HOH HOH . C 3 HOH A 92 93 93 HOH HOH . C 3 HOH A 93 94 94 HOH HOH . C 3 HOH A 94 95 95 HOH HOH . C 3 HOH A 95 428 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VHW . . . B 2 13.008 -1.756 -34.477 1 11.16 ? C1 VHW 1 A 1 HETATM 2 C C2 VHW . . . B 2 14.257 -2.26 -33.769 1 10.1 ? C2 VHW 1 A 1 HETATM 3 C C3 VHW . . . B 2 13.862 -2.722 -32.387 1 10.96 ? C3 VHW 1 A 1 HETATM 4 C C4 VHW . . . B 2 12.2 -0.705 -33.687 1 9.54 ? C4 VHW 1 A 1 HETATM 5 C C5 VHW . . . B 2 11.908 -1.159 -32.264 1 12.74 ? C5 VHW 1 A 1 HETATM 6 C C6 VHW . . . B 2 13.19 -1.63 -31.605 1 12.48 ? C6 VHW 1 A 1 HETATM 7 C C7 VHW . . . B 2 12.926 -1.698 -30.085 1 13.72 ? C7 VHW 1 A 1 HETATM 8 C C8 VHW . . . B 2 11.852 -0.636 -29.838 1 10.89 ? C8 VHW 1 A 1 HETATM 9 C C9 VHW . . . B 2 11.598 -0.044 -31.245 1 14.94 ? C9 VHW 1 A 1 HETATM 10 C C10 VHW . . . B 2 14.111 -3.968 -31.924 1 9.19 ? C10 VHW 1 A 1 HETATM 11 C C11 VHW . . . B 2 14.818 -5.031 -32.679 1 9.61 ? C11 VHW 1 A 1 HETATM 12 C C12 VHW . . . B 2 14.643 -6.351 -32.367 1 11.23 ? C12 VHW 1 A 1 HETATM 13 C C13 VHW . . . B 2 15.403 -7.39 -33.129 1 12.45 ? C13 VHW 1 A 1 HETATM 14 C C14 VHW . . . B 2 15.923 -8.509 -32.225 1 15.17 ? C14 VHW 1 A 1 HETATM 15 C C15 VHW . . . B 2 14.86 -9.035 -31.265 1 14.21 ? C15 VHW 1 A 1 HETATM 16 C C16 VHW . . . B 2 14.258 -7.944 -30.391 1 10.83 ? C16 VHW 1 A 1 HETATM 17 C C17 VHW . . . B 2 13.744 -6.862 -31.309 1 10.34 ? C17 VHW 1 A 1 HETATM 18 C C18 VHW . . . B 2 12.493 -6.432 -31.19 1 8.1 ? C18 VHW 1 A 1 HETATM 19 O O19 VHW . . . B 2 17.049 -8.065 -31.411 1 20.41 ? O19 VHW 1 A 1 HETATM 20 O O20 VHW . . . B 2 13.23 -8.631 -29.676 1 8.77 ? O20 VHW 1 A 1 HETATM 21 C C21 VHW . . . B 2 10.291 0.771 -31.436 1 17.4 ? C21 VHW 1 A 1 HETATM 22 C C22 VHW . . . B 2 10.849 -2.274 -32.292 1 12.31 ? C22 VHW 1 A 1 HETATM 23 C C23 VHW . . . B 2 9.025 0.069 -30.976 1 16.71 ? C23 VHW 1 A 1 HETATM 24 C C24 VHW . . . B 2 10.355 2.157 -30.751 1 16.46 ? C24 VHW 1 A 1 HETATM 25 C C25 VHW . . . B 2 8.005 -0.149 -31.827 1 16.21 ? C25 VHW 1 A 1 HETATM 26 C C26 VHW . . . B 2 8.006 0.204 -33.301 1 17.99 ? C26 VHW 1 A 1 HETATM 27 C C27 VHW . . . B 2 6.659 -0.3 -33.864 1 18.95 ? C27 VHW 1 A 1 HETATM 28 C C28 VHW . . . B 2 6.021 -1.068 -32.733 1 19.38 ? C28 VHW 1 A 1 HETATM 29 C C29 VHW . . . B 2 6.771 -0.786 -31.455 1 17.62 ? C29 VHW 1 A 1 HETATM 30 O O30 VHW . . . B 2 6.458 -1.056 -30.299 1 18.28 ? O30 VHW 1 A 1 HETATM 31 C C31 VHW . . . B 2 4.847 -2.033 -32.986 1 20.06 ? C31 VHW 1 A 1 HETATM 32 C C32 VHW . . . B 2 5.035 0.097 -32.462 1 19.95 ? C32 VHW 1 A 1 HETATM 33 C C33 VHW . . . B 2 4.08 -2.457 -31.774 1 19.31 ? C33 VHW 1 A 1 HETATM 34 O O34 VHW . . . B 2 4.747 1.064 -33.498 1 24.26 ? O34 VHW 1 A 1 HETATM 35 O O35 VHW . . . B 2 4.443 0.335 -31.404 1 18.55 ? O35 VHW 1 A 1 HETATM 36 C C36 VHW . . . B 2 3.626 1.938 -33.337 1 26.99 ? C36 VHW 1 A 1 HETATM 37 O O37 VHW . . . B 2 13.844 -9.742 -31.981 1 16.45 ? O37 VHW 1 A 1 HETATM 38 C C38 VHW . . . B 2 14.491 -10.972 -32.179 1 20.04 ? C38 VHW 1 A 1 HETATM 39 C C39 VHW . . . B 2 13.676 -12.191 -31.927 1 19.42 ? C39 VHW 1 A 1 HETATM 40 C C40 VHW . . . B 2 14.629 -13.123 -31.207 1 18.77 ? C40 VHW 1 A 1 HETATM 41 O O41 VHW . . . B 2 13.889 -13.505 -30.031 1 18.63 ? O41 VHW 1 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #