data_3VHX
#
_model_server_result.job_id            NqCFrTP1fOFm0IZy8H96xg 
_model_server_result.datetime_utc      '2024-11-29 16:30:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vhx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1}' 
#
_entry.id    3VHX 
#
_exptl.entry_id    3VHX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.74 
_cell.angle_gamma         90 
_cell.entry_id            3VHX 
_cell.length_a            45.743 
_cell.length_b            174.573 
_cell.length_c            76.814 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VHX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,R,S,T,U 1 1 
E,F,G,H,M,N,O,P,Q,V,W,X,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             O 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 16 A THR 27 1_555 J MG MG . A MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? 
metalc ? metalc2 A OG1 THR 33 A THR 44 1_555 J MG MG . A MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc3 I O1B GTP . A GTP 184 1_555 J MG MG . A MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc4 I O1G GTP . A GTP 184 1_555 J MG MG . A MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc5 J MG MG . A MG 185 1_555 R O HOH . A HOH 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc6 C OG1 THR 16 C THR 27 1_555 L MG MG . C MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc7 C OG1 THR 33 C THR 44 1_555 L MG MG . C MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc8 K O1G GTP . C GTP 184 1_555 L MG MG . C MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc9 K O1B GTP . C GTP 184 1_555 L MG MG . C MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc10 L MG MG . C MG 185 1_555 T O HOH . C HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? 
metalc ? metalc11 L MG MG . C MG 185 1_555 T O HOH . C HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc12 E OG1 THR 16 E THR 27 1_555 N MG MG . E MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc13 E OG1 THR 33 E THR 44 1_555 N MG MG . E MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc14 M O1G GTP . E GTP 184 1_555 N MG MG . E MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc15 M O1B GTP . E GTP 184 1_555 N MG MG . E MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc16 N MG MG . E MG 185 1_555 V O HOH . E HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc17 N MG MG . E MG 185 1_555 V O HOH . E HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.725 ? 
metalc ? metalc18 G OG1 THR 16 G THR 27 1_555 Q MG MG . G MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc19 G OG1 THR 33 G THR 44 1_555 Q MG MG . G MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc20 P O1G GTP . G GTP 184 1_555 Q MG MG . G MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? 
metalc ? metalc21 P O1B GTP . G GTP 184 1_555 Q MG MG . G MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3VHX 
_atom_sites.fract_transf_matrix[1][1]    0.021861 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003361 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005728 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013171 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GTP A 1 184 174 GTP GTP . 
J 4 MG A 1 185 175 MG MG . 
K 3 GTP C 1 184 174 GTP GTP . 
L 4 MG C 1 185 175 MG MG . 
M 3 GTP E 1 184 174 GTP GTP . 
N 4 MG E 1 185 175 MG MG . 
O 5 GOL F 1 1 1 GOL GOL . 
P 3 GTP G 1 184 174 GTP GTP . 
Q 4 MG G 1 185 175 MG MG . 
R 6 HOH A 1 186 20 HOH HOH . 
R 6 HOH A 2 187 24 HOH HOH . 
R 6 HOH A 3 188 37 HOH HOH . 
R 6 HOH A 4 189 51 HOH HOH . 
R 6 HOH A 5 190 63 HOH HOH . 
R 6 HOH A 6 191 65 HOH HOH . 
R 6 HOH A 7 192 78 HOH HOH . 
R 6 HOH A 8 193 92 HOH HOH . 
S 6 HOH B 1 808 6 HOH HOH . 
S 6 HOH B 2 809 17 HOH HOH . 
S 6 HOH B 3 810 25 HOH HOH . 
S 6 HOH B 4 811 53 HOH HOH . 
S 6 HOH B 5 812 58 HOH HOH . 
S 6 HOH B 6 813 85 HOH HOH . 
S 6 HOH B 7 814 96 HOH HOH . 
T 6 HOH C 1 186 3 HOH HOH . 
T 6 HOH C 2 187 12 HOH HOH . 
T 6 HOH C 3 188 16 HOH HOH . 
T 6 HOH C 4 189 19 HOH HOH . 
T 6 HOH C 5 190 21 HOH HOH . 
T 6 HOH C 6 191 22 HOH HOH . 
T 6 HOH C 7 192 30 HOH HOH . 
T 6 HOH C 8 193 31 HOH HOH . 
T 6 HOH C 9 194 34 HOH HOH . 
T 6 HOH C 10 195 35 HOH HOH . 
T 6 HOH C 11 196 38 HOH HOH . 
T 6 HOH C 12 197 39 HOH HOH . 
T 6 HOH C 13 198 41 HOH HOH . 
T 6 HOH C 14 199 42 HOH HOH . 
T 6 HOH C 15 200 46 HOH HOH . 
T 6 HOH C 16 201 47 HOH HOH . 
T 6 HOH C 17 202 48 HOH HOH . 
T 6 HOH C 18 203 49 HOH HOH . 
T 6 HOH C 19 204 57 HOH HOH . 
T 6 HOH C 20 205 66 HOH HOH . 
T 6 HOH C 21 206 79 HOH HOH . 
T 6 HOH C 22 207 82 HOH HOH . 
T 6 HOH C 23 208 89 HOH HOH . 
T 6 HOH C 24 209 90 HOH HOH . 
T 6 HOH C 25 210 93 HOH HOH . 
T 6 HOH C 26 211 101 HOH HOH . 
T 6 HOH C 27 212 102 HOH HOH . 
T 6 HOH C 28 213 105 HOH HOH . 
U 6 HOH D 1 808 4 HOH HOH . 
U 6 HOH D 2 809 5 HOH HOH . 
U 6 HOH D 3 810 7 HOH HOH . 
U 6 HOH D 4 811 11 HOH HOH . 
U 6 HOH D 5 812 18 HOH HOH . 
U 6 HOH D 6 813 33 HOH HOH . 
U 6 HOH D 7 814 62 HOH HOH . 
U 6 HOH D 8 815 69 HOH HOH . 
U 6 HOH D 9 816 81 HOH HOH . 
U 6 HOH D 10 817 84 HOH HOH . 
U 6 HOH D 11 818 87 HOH HOH . 
U 6 HOH D 12 819 88 HOH HOH . 
V 6 HOH E 1 186 2 HOH HOH . 
V 6 HOH E 2 187 14 HOH HOH . 
V 6 HOH E 3 188 27 HOH HOH . 
V 6 HOH E 4 189 28 HOH HOH . 
V 6 HOH E 5 190 29 HOH HOH . 
V 6 HOH E 6 191 32 HOH HOH . 
V 6 HOH E 7 192 45 HOH HOH . 
V 6 HOH E 8 193 50 HOH HOH . 
V 6 HOH E 9 194 52 HOH HOH . 
V 6 HOH E 10 195 54 HOH HOH . 
V 6 HOH E 11 196 64 HOH HOH . 
V 6 HOH E 12 197 67 HOH HOH . 
V 6 HOH E 13 198 70 HOH HOH . 
V 6 HOH E 14 199 71 HOH HOH . 
V 6 HOH E 15 200 72 HOH HOH . 
V 6 HOH E 16 201 83 HOH HOH . 
V 6 HOH E 17 202 86 HOH HOH . 
V 6 HOH E 18 203 91 HOH HOH . 
V 6 HOH E 19 204 94 HOH HOH . 
V 6 HOH E 20 205 98 HOH HOH . 
V 6 HOH E 21 206 100 HOH HOH . 
V 6 HOH E 22 207 104 HOH HOH . 
W 6 HOH F 1 808 8 HOH HOH . 
W 6 HOH F 2 809 9 HOH HOH . 
W 6 HOH F 3 810 10 HOH HOH . 
W 6 HOH F 4 811 15 HOH HOH . 
W 6 HOH F 5 812 23 HOH HOH . 
W 6 HOH F 6 813 36 HOH HOH . 
W 6 HOH F 7 814 40 HOH HOH . 
W 6 HOH F 8 815 56 HOH HOH . 
W 6 HOH F 9 816 59 HOH HOH . 
W 6 HOH F 10 817 61 HOH HOH . 
W 6 HOH F 11 818 74 HOH HOH . 
W 6 HOH F 12 819 75 HOH HOH . 
W 6 HOH F 13 820 76 HOH HOH . 
W 6 HOH F 14 821 77 HOH HOH . 
W 6 HOH F 15 822 95 HOH HOH . 
W 6 HOH F 16 823 103 HOH HOH . 
W 6 HOH F 17 824 1 HOH HOH . 
X 6 HOH G 1 186 44 HOH HOH . 
X 6 HOH G 2 187 68 HOH HOH . 
X 6 HOH G 3 188 73 HOH HOH . 
Y 6 HOH H 1 808 13 HOH HOH . 
Y 6 HOH H 2 809 26 HOH HOH . 
Y 6 HOH H 3 810 43 HOH HOH . 
Y 6 HOH H 4 811 55 HOH HOH . 
Y 6 HOH H 5 812 60 HOH HOH . 
Y 6 HOH H 6 813 80 HOH HOH . 
Y 6 HOH H 7 814 97 HOH HOH . 
Y 6 HOH H 8 815 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . O 5 -6.152 -62.631 -45.527 1 51.9 ? C1 GOL 1 F 1 
HETATM 2 O O1 GOL . . . O 5 -7.081 -61.84 -44.81 1 52.99 ? O1 GOL 1 F 1 
HETATM 3 C C2 GOL . . . O 5 -5.287 -61.731 -46.406 1 52 ? C2 GOL 1 F 1 
HETATM 4 O O2 GOL . . . O 5 -5.601 -61.949 -47.779 1 51.64 ? O2 GOL 1 F 1 
HETATM 5 C C3 GOL . . . O 5 -3.829 -62.099 -46.124 1 51.11 ? C3 GOL 1 F 1 
HETATM 6 O O3 GOL . . . O 5 -2.958 -60.994 -45.971 1 49.17 ? O3 GOL 1 F 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#