data_3VI8 # _model_server_result.job_id DgGyxE2BGmG_ZlwGm8RwWg _model_server_result.datetime_utc '2024-10-31 00:22:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vi8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3VI8 # _exptl.entry_id 3VI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 465.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(4-methoxy-3-{[(pyren-1-ylcarbonyl)amino]methyl}benzyl)butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.95 _cell.angle_gamma 90 _cell.entry_id 3VI8 _cell.length_a 44.368 _cell.length_b 61.304 _cell.length_c 53.179 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H27 N O4' _chem_comp.formula_weight 465.54 _chem_comp.id 13M _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(4-methoxy-3-{[(pyren-1-ylcarbonyl)amino]methyl}benzyl)butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 13M doub 1 n n C1 C2 13M sing 2 n n C1 O2 13M sing 3 n n C2 C3 13M sing 4 n n C2 C5 13M sing 5 n n C3 C4 13M sing 6 n n O3 C9 13M sing 7 n n O3 C12 13M sing 8 n n C5 C6 13M sing 9 n n C6 C7 13M doub 10 n y C6 C11 13M sing 11 n y C7 C8 13M sing 12 n y C8 C9 13M doub 13 n y C8 C15 13M sing 14 n n C9 C10 13M sing 15 n y C10 C11 13M doub 16 n y C15 N99 13M sing 17 n n C17 C19 13M doub 18 n y C17 C87 13M sing 19 n y C17 C93 13M sing 20 n y C19 C96 13M sing 21 n y C19 C98 13M sing 22 n y C22 C87 13M doub 23 n y C22 C99 13M sing 24 n y C85 C86 13M doub 25 n y C85 C95 13M sing 26 n y C86 C88 13M sing 27 n y C87 C97 13M sing 28 n n C88 C89 13M doub 29 n y C89 C91 13M sing 30 n y C89 C96 13M sing 31 n y C91 C92 13M doub 32 n y C92 C98 13M sing 33 n y C93 C94 13M doub 34 n y C94 C95 13M sing 35 n y C95 C96 13M doub 36 n y C97 N99 13M sing 37 n n C97 O99 13M doub 38 n n C98 C99 13M doub 39 n y C2 H2 13M sing 40 n n O2 HO2 13M sing 41 n n C3 H3 13M sing 42 n n C3 H3A 13M sing 43 n n C4 H4 13M sing 44 n n C4 H4A 13M sing 45 n n C4 H4B 13M sing 46 n n C5 H5 13M sing 47 n n C5 H5A 13M sing 48 n n C7 H7 13M sing 49 n n C10 H10 13M sing 50 n n C11 H11 13M sing 51 n n C12 H12 13M sing 52 n n C12 H12A 13M sing 53 n n C12 H12B 13M sing 54 n n C15 H15 13M sing 55 n n C15 H15A 13M sing 56 n n C22 H22 13M sing 57 n n C85 H85 13M sing 58 n n C86 H86 13M sing 59 n n C88 H88 13M sing 60 n n C91 H91 13M sing 61 n n C92 H92 13M sing 62 n n C93 H93 13M sing 63 n n C94 H94 13M sing 64 n n C99 H99 13M sing 65 n n N99 HN99 13M sing 66 n n # _atom_sites.entry_id 3VI8 _atom_sites.fract_transf_matrix[1][1] 0.022539 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006871 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 13M A 1 1 1 13M 13M . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1005 1005 HOH HOH . C 3 HOH A 5 1006 1006 HOH HOH . C 3 HOH A 6 1007 1007 HOH HOH . C 3 HOH A 7 1008 1008 HOH HOH . C 3 HOH A 8 1009 1009 HOH HOH . C 3 HOH A 9 1010 1010 HOH HOH . C 3 HOH A 10 1011 1011 HOH HOH . C 3 HOH A 11 1012 1012 HOH HOH . C 3 HOH A 12 1013 1013 HOH HOH . C 3 HOH A 13 1014 1014 HOH HOH . C 3 HOH A 14 1015 1015 HOH HOH . C 3 HOH A 15 1016 1016 HOH HOH . C 3 HOH A 16 1017 1017 HOH HOH . C 3 HOH A 17 1018 1018 HOH HOH . C 3 HOH A 18 1019 1019 HOH HOH . C 3 HOH A 19 1020 1020 HOH HOH . C 3 HOH A 20 1021 1021 HOH HOH . C 3 HOH A 21 1022 1022 HOH HOH . C 3 HOH A 22 1023 1023 HOH HOH . C 3 HOH A 23 1024 1024 HOH HOH . C 3 HOH A 24 1025 1025 HOH HOH . C 3 HOH A 25 1026 1026 HOH HOH . C 3 HOH A 26 1027 1027 HOH HOH . C 3 HOH A 27 1028 1028 HOH HOH . C 3 HOH A 28 1029 1029 HOH HOH . C 3 HOH A 29 1030 1030 HOH HOH . C 3 HOH A 30 1031 1031 HOH HOH . C 3 HOH A 31 1032 1032 HOH HOH . C 3 HOH A 32 1033 1033 HOH HOH . C 3 HOH A 33 1034 1034 HOH HOH . C 3 HOH A 34 1035 1035 HOH HOH . C 3 HOH A 35 1036 1036 HOH HOH . C 3 HOH A 36 1037 1037 HOH HOH . C 3 HOH A 37 1038 1038 HOH HOH . C 3 HOH A 38 1039 1039 HOH HOH . C 3 HOH A 39 1040 1040 HOH HOH . C 3 HOH A 40 1041 1041 HOH HOH . C 3 HOH A 41 1042 1042 HOH HOH . C 3 HOH A 42 1043 1043 HOH HOH . C 3 HOH A 43 1044 1044 HOH HOH . C 3 HOH A 44 1045 1045 HOH HOH . C 3 HOH A 45 1046 1046 HOH HOH . C 3 HOH A 46 1047 1047 HOH HOH . C 3 HOH A 47 1048 1048 HOH HOH . C 3 HOH A 48 1049 1049 HOH HOH . C 3 HOH A 49 1050 1050 HOH HOH . C 3 HOH A 50 1051 1051 HOH HOH . C 3 HOH A 51 1052 1052 HOH HOH . C 3 HOH A 52 1053 1053 HOH HOH . C 3 HOH A 53 1054 1054 HOH HOH . C 3 HOH A 54 1055 1055 HOH HOH . C 3 HOH A 55 1056 1056 HOH HOH . C 3 HOH A 56 1059 1059 HOH HOH . C 3 HOH A 57 1060 1060 HOH HOH . C 3 HOH A 58 1061 1061 HOH HOH . C 3 HOH A 59 1062 1062 HOH HOH . C 3 HOH A 60 1063 1063 HOH HOH . C 3 HOH A 61 1064 1064 HOH HOH . C 3 HOH A 62 1065 1065 HOH HOH . C 3 HOH A 63 1066 1066 HOH HOH . C 3 HOH A 64 1067 1067 HOH HOH . C 3 HOH A 65 1068 1068 HOH HOH . C 3 HOH A 66 1069 1069 HOH HOH . C 3 HOH A 67 1070 1070 HOH HOH . C 3 HOH A 68 1071 1071 HOH HOH . C 3 HOH A 69 1072 1072 HOH HOH . C 3 HOH A 70 1073 1073 HOH HOH . C 3 HOH A 71 1074 1074 HOH HOH . C 3 HOH A 72 1075 1075 HOH HOH . C 3 HOH A 73 1076 1076 HOH HOH . C 3 HOH A 74 1077 1077 HOH HOH . C 3 HOH A 75 1078 1078 HOH HOH . C 3 HOH A 76 1079 1079 HOH HOH . C 3 HOH A 77 1080 1080 HOH HOH . C 3 HOH A 78 1081 1081 HOH HOH . C 3 HOH A 79 1082 1082 HOH HOH . C 3 HOH A 80 1083 1083 HOH HOH . C 3 HOH A 81 1084 1084 HOH HOH . C 3 HOH A 82 1085 1085 HOH HOH . C 3 HOH A 83 1086 1086 HOH HOH . C 3 HOH A 84 1087 1087 HOH HOH . C 3 HOH A 85 1088 1088 HOH HOH . C 3 HOH A 86 1089 1089 HOH HOH . C 3 HOH A 87 1090 1090 HOH HOH . C 3 HOH A 88 1091 1091 HOH HOH . C 3 HOH A 89 1092 1092 HOH HOH . C 3 HOH A 90 1093 1093 HOH HOH . C 3 HOH A 91 1095 1095 HOH HOH . C 3 HOH A 92 1096 1096 HOH HOH . C 3 HOH A 93 1097 1097 HOH HOH . C 3 HOH A 94 1098 1098 HOH HOH . C 3 HOH A 95 1099 1099 HOH HOH . C 3 HOH A 96 1100 1100 HOH HOH . C 3 HOH A 97 1101 1101 HOH HOH . C 3 HOH A 98 1102 1102 HOH HOH . C 3 HOH A 99 1103 1103 HOH HOH . C 3 HOH A 100 1105 1105 HOH HOH . C 3 HOH A 101 1107 1107 HOH HOH . C 3 HOH A 102 1108 1108 HOH HOH . C 3 HOH A 103 1109 1109 HOH HOH . C 3 HOH A 104 1111 1111 HOH HOH . C 3 HOH A 105 1113 1113 HOH HOH . C 3 HOH A 106 1114 1114 HOH HOH . C 3 HOH A 107 1115 1115 HOH HOH . C 3 HOH A 108 1116 1116 HOH HOH . C 3 HOH A 109 1117 1117 HOH HOH . C 3 HOH A 110 1118 1118 HOH HOH . C 3 HOH A 111 1119 1119 HOH HOH . C 3 HOH A 112 1120 1120 HOH HOH . C 3 HOH A 113 1122 1122 HOH HOH . C 3 HOH A 114 1123 1123 HOH HOH . C 3 HOH A 115 1124 1124 HOH HOH . C 3 HOH A 116 1125 1125 HOH HOH . C 3 HOH A 117 1126 1126 HOH HOH . C 3 HOH A 118 1127 1127 HOH HOH . C 3 HOH A 119 1129 1129 HOH HOH . C 3 HOH A 120 1130 1130 HOH HOH . C 3 HOH A 121 1131 1131 HOH HOH . C 3 HOH A 122 1132 1132 HOH HOH . C 3 HOH A 123 1134 1134 HOH HOH . C 3 HOH A 124 1135 1135 HOH HOH . C 3 HOH A 125 1136 1136 HOH HOH . C 3 HOH A 126 1137 1137 HOH HOH . C 3 HOH A 127 1138 1138 HOH HOH . C 3 HOH A 128 1139 1139 HOH HOH . C 3 HOH A 129 1141 1141 HOH HOH . C 3 HOH A 130 1142 1142 HOH HOH . C 3 HOH A 131 1143 1143 HOH HOH . C 3 HOH A 132 1144 1144 HOH HOH . C 3 HOH A 133 1146 1146 HOH HOH . C 3 HOH A 134 1147 1147 HOH HOH . C 3 HOH A 135 1149 1149 HOH HOH . C 3 HOH A 136 1151 1151 HOH HOH . C 3 HOH A 137 1152 1152 HOH HOH . C 3 HOH A 138 1154 1154 HOH HOH . C 3 HOH A 139 1156 1156 HOH HOH . C 3 HOH A 140 1161 1161 HOH HOH . C 3 HOH A 141 1162 1162 HOH HOH . C 3 HOH A 142 1164 1164 HOH HOH . C 3 HOH A 143 1172 1172 HOH HOH . C 3 HOH A 144 1173 1173 HOH HOH . C 3 HOH A 145 1174 1174 HOH HOH . C 3 HOH A 146 1176 1176 HOH HOH . C 3 HOH A 147 1177 1177 HOH HOH . C 3 HOH A 148 1178 1178 HOH HOH . C 3 HOH A 149 1179 1179 HOH HOH . C 3 HOH A 150 1180 1180 HOH HOH . C 3 HOH A 151 1181 1181 HOH HOH . C 3 HOH A 152 1182 1182 HOH HOH . C 3 HOH A 153 1183 1183 HOH HOH . C 3 HOH A 154 1184 1184 HOH HOH . C 3 HOH A 155 1185 1185 HOH HOH . C 3 HOH A 156 1186 1186 HOH HOH . C 3 HOH A 157 1187 1187 HOH HOH . C 3 HOH A 158 1188 1188 HOH HOH . C 3 HOH A 159 1189 1189 HOH HOH . C 3 HOH A 160 1190 1190 HOH HOH . C 3 HOH A 161 1191 1191 HOH HOH . C 3 HOH A 162 1192 1192 HOH HOH . C 3 HOH A 163 1193 1193 HOH HOH . C 3 HOH A 164 1194 1194 HOH HOH . C 3 HOH A 165 1196 1196 HOH HOH . C 3 HOH A 166 1197 1197 HOH HOH . C 3 HOH A 167 1203 1203 HOH HOH . C 3 HOH A 168 1205 1205 HOH HOH . C 3 HOH A 169 1206 1206 HOH HOH . C 3 HOH A 170 1207 1207 HOH HOH . C 3 HOH A 171 1208 1208 HOH HOH . C 3 HOH A 172 1209 1209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 13M . . . B 2 14.526 2.078 -1.525 1 19.62 ? C1 13M 1 A 1 HETATM 2 O O1 13M . . . B 2 15.116 1.027 -1.161 1 20.59 ? O1 13M 1 A 1 HETATM 3 C C2 13M . . . B 2 13.799 2.072 -2.865 1 21.69 ? C2 13M 1 A 1 HETATM 4 O O2 13M . . . B 2 14.462 3.179 -0.889 1 20.32 ? O2 13M 1 A 1 HETATM 5 C C3 13M . . . B 2 14.57 1.368 -3.975 1 22.32 ? C3 13M 1 A 1 HETATM 6 O O3 13M . . . B 2 8.952 1.033 -7.089 1 27.14 ? O3 13M 1 A 1 HETATM 7 C C4 13M . . . B 2 15.899 2.051 -4.252 1 23.65 ? C4 13M 1 A 1 HETATM 8 C C5 13M . . . B 2 12.445 1.398 -2.563 1 22.4 ? C5 13M 1 A 1 HETATM 9 C C6 13M . . . B 2 11.529 1.285 -3.764 1 23.52 ? C6 13M 1 A 1 HETATM 10 C C7 13M . . . B 2 10.81 2.401 -4.225 1 23.47 ? C7 13M 1 A 1 HETATM 11 C C8 13M . . . B 2 9.95 2.316 -5.337 1 24.79 ? C8 13M 1 A 1 HETATM 12 C C9 13M . . . B 2 9.808 1.072 -6.005 1 25.52 ? C9 13M 1 A 1 HETATM 13 C C10 13M . . . B 2 10.53 -0.04 -5.544 1 26.54 ? C10 13M 1 A 1 HETATM 14 C C11 13M . . . B 2 11.38 0.069 -4.436 1 25.57 ? C11 13M 1 A 1 HETATM 15 C C12 13M . . . B 2 8.904 -0.184 -7.827 1 22.38 ? C12 13M 1 A 1 HETATM 16 C C15 13M . . . B 2 9.216 3.554 -5.773 1 21.44 ? C15 13M 1 A 1 HETATM 17 C C17 13M . . . B 2 9.912 6.785 -9.492 1 23.82 ? C17 13M 1 A 1 HETATM 18 C C19 13M . . . B 2 10.414 6.989 -10.815 1 23.99 ? C19 13M 1 A 1 HETATM 19 C C22 13M . . . B 2 10.098 4.357 -9.847 1 24.75 ? C22 13M 1 A 1 HETATM 20 C C85 13M . . . B 2 10.412 10.739 -11.057 1 26.97 ? C85 13M 1 A 1 HETATM 21 C C86 13M . . . B 2 10.894 10.918 -12.357 1 26.09 ? C86 13M 1 A 1 HETATM 22 C C87 13M . . . B 2 9.754 5.444 -9.02 1 23.98 ? C87 13M 1 A 1 HETATM 23 C C88 13M . . . B 2 11.22 9.815 -13.146 1 24.73 ? C88 13M 1 A 1 HETATM 24 C C89 13M . . . B 2 11.07 8.511 -12.652 1 24.01 ? C89 13M 1 A 1 HETATM 25 C C91 13M . . . B 2 11.395 7.397 -13.438 1 23.46 ? C91 13M 1 A 1 HETATM 26 C C92 13M . . . B 2 11.238 6.099 -12.928 1 22.98 ? C92 13M 1 A 1 HETATM 27 C C93 13M . . . B 2 9.601 7.95 -8.745 1 25.78 ? C93 13M 1 A 1 HETATM 28 C C94 13M . . . B 2 9.764 9.247 -9.246 1 25.5 ? C94 13M 1 A 1 HETATM 29 C C95 13M . . . B 2 10.248 9.443 -10.537 1 24.96 ? C95 13M 1 A 1 HETATM 30 C C96 13M . . . B 2 10.579 8.312 -11.333 1 24 ? C96 13M 1 A 1 HETATM 31 C C97 13M . . . B 2 9.216 5.144 -7.661 1 24.2 ? C97 13M 1 A 1 HETATM 32 C C98 13M . . . B 2 10.751 5.881 -11.63 1 23.12 ? C98 13M 1 A 1 HETATM 33 C C99 13M . . . B 2 10.591 4.577 -11.131 1 23.82 ? C99 13M 1 A 1 HETATM 34 N N99 13M . . . B 2 9.659 3.992 -7.077 1 23.36 ? N99 13M 1 A 1 HETATM 35 O O99 13M . . . B 2 8.401 5.897 -7.118 1 27.2 ? O99 13M 1 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #