data_3VID # _model_server_result.job_id u2TjBwDxov0bbliNwcou9A _model_server_result.datetime_utc '2024-12-05 07:57:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 3VID # _exptl.entry_id 3VID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 223.273 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,5,6,11-tetrahydro-1H-pyrazolo[4',3':6,7]cyclohepta[1,2-b]indole" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VID _cell.length_a 38.24 _cell.length_b 94.62 _cell.length_c 96.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VID _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H13 N3' _chem_comp.formula_weight 223.273 _chem_comp.id 4TT _chem_comp.mon_nstd_flag . _chem_comp.name "4,5,6,11-tetrahydro-1H-pyrazolo[4',3':6,7]cyclohepta[1,2-b]indole" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C10 4TT doub 1 n y C5 C9 4TT sing 2 n y C5 C2 4TT sing 3 n y C6 C2 4TT sing 4 n n C6 C11 4TT sing 5 n n C7 C13 4TT sing 6 n y C7 C3 4TT doub 7 n y C7 C12 4TT sing 8 n n C10 C16 4TT sing 9 n y C13 N14 4TT doub 10 n y C15 C17 4TT sing 11 n y C15 C9 4TT doub 12 n y C17 C16 4TT doub 13 n y N4 C9 4TT sing 14 n y N4 C1 4TT sing 15 n y C1 C3 4TT sing 16 n n C1 C2 4TT doub 17 n y C3 N8 4TT sing 18 n y N8 N14 4TT sing 19 n y C11 C12 4TT sing 20 n n C6 H6 4TT sing 21 n n C6 H6A 4TT sing 22 n n C10 H10 4TT sing 23 n n C13 H13 4TT sing 24 n n C15 H15 4TT sing 25 n n C17 H17 4TT sing 26 n n N4 HN4 4TT sing 27 n n C16 H16 4TT sing 28 n n N8 HN8 4TT sing 29 n n C11 H11 4TT sing 30 n n C11 H11A 4TT sing 31 n n C12 H12 4TT sing 32 n n C12 H12A 4TT sing 33 n n # _atom_sites.entry_id 3VID _atom_sites.fract_transf_matrix[1][1] 0.026151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4TT A 1 2001 2001 4TT LIG . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 4TT . . . B 2 -1.362 19.931 -28.567 1 46.8 ? C5 4TT 2001 A 1 HETATM 2 C C6 4TT . . . B 2 -0.197 17.705 -29.182 1 45.04 ? C6 4TT 2001 A 1 HETATM 3 C C7 4TT . . . B 2 -2.21 16.635 -31.358 1 42.7 ? C7 4TT 2001 A 1 HETATM 4 C C10 4TT . . . B 2 -0.489 20.468 -27.621 1 48.55 ? C10 4TT 2001 A 1 HETATM 5 C C13 4TT . . . B 2 -3.071 16.02 -32.265 1 40.46 ? C13 4TT 2001 A 1 HETATM 6 C C15 4TT . . . B 2 -2.815 21.849 -28.352 1 48.08 ? C15 4TT 2001 A 1 HETATM 7 C C17 4TT . . . B 2 -1.953 22.39 -27.397 1 49.07 ? C17 4TT 2001 A 1 HETATM 8 N N4 4TT . . . B 2 -3.171 19.881 -29.872 1 45.24 ? N4 4TT 2001 A 1 HETATM 9 C C9 4TT . . . B 2 -2.524 20.615 -28.946 1 46.69 ? C9 4TT 2001 A 1 HETATM 10 C C16 4TT . . . B 2 -0.794 21.698 -27.028 1 49.11 ? C16 4TT 2001 A 1 HETATM 11 C C1 4TT . . . B 2 -2.431 18.785 -30.072 1 44.54 ? C1 4TT 2001 A 1 HETATM 12 C C3 4TT . . . B 2 -2.866 17.817 -30.988 1 43.07 ? C3 4TT 2001 A 1 HETATM 13 N N8 4TT . . . B 2 -4.059 17.971 -31.594 1 41.25 ? N8 4TT 2001 A 1 HETATM 14 N N14 4TT . . . B 2 -4.151 16.819 -32.389 1 39.29 ? N14 4TT 2001 A 1 HETATM 15 C C2 4TT . . . B 2 -1.286 18.742 -29.278 1 45.64 ? C2 4TT 2001 A 1 HETATM 16 C C11 4TT . . . B 2 0.11 17.147 -30.557 1 44.63 ? C11 4TT 2001 A 1 HETATM 17 C C12 4TT . . . B 2 -0.887 16.059 -30.916 1 43.4 ? C12 4TT 2001 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #