data_3VJI
#
_model_server_result.job_id            VNpF55C-YB2JXposCa6R9Q 
_model_server_result.datetime_utc      '2024-10-31 02:20:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vji 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    3VJI 
#
_exptl.entry_id    3VJI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              517.699 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-{4-butoxy-3-[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]benzoyl}amino)methyl]benzyl}butanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.79 
_cell.angle_gamma         90 
_cell.entry_id            3VJI 
_cell.length_a            93.15 
_cell.length_b            60.61 
_cell.length_c            118.771 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VJI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C33 H43 N O4' 
_chem_comp.formula_weight    517.699 
_chem_comp.id                J53 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-{4-butoxy-3-[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]benzoyl}amino)methyl]benzyl}butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C31 J53 doub 171 n n 
C31 O3 J53 sing 172 n n 
C31 C29 J53 sing 173 n n 
C32 C30 J53 sing 174 n n 
C30 C29 J53 sing 175 n n 
C29 C26 J53 sing 176 n n 
C26 C25 J53 sing 177 n n 
C24 C23 J53 doub 178 n y 
C24 C25 J53 sing 179 n y 
C23 C21 J53 sing 180 n y 
C25 C22 J53 doub 181 n y 
C34 O1 J53 sing 182 n n 
C34 C33 J53 sing 183 n n 
C28 C33 J53 sing 184 n n 
C28 C27 J53 sing 185 n n 
C21 O1 J53 sing 186 n n 
C21 C20 J53 doub 187 n y 
C22 C20 J53 sing 188 n y 
C20 C19 J53 sing 189 n n 
C19 N J53 sing 190 n n 
N C3 J53 sing 191 n n 
C3 O2 J53 doub 192 n n 
C3 C1 J53 sing 193 n n 
C1 C2 J53 doub 194 n y 
C1 C4 J53 sing 195 n y 
C2 C5 J53 sing 196 n y 
C4 C8 J53 doub 197 n y 
C5 C6 J53 doub 198 n y 
C11 C12 J53 sing 199 n n 
C11 C7 J53 sing 200 n n 
C8 C6 J53 sing 201 n y 
C6 C7 J53 sing 202 n n 
C12 C40 J53 sing 203 n n 
C12 C42 J53 sing 204 n n 
C7 C41 J53 sing 205 n n 
C7 C9 J53 sing 206 n n 
C40 C37 J53 sing 207 n n 
C42 C38 J53 sing 208 n n 
C41 C37 J53 sing 209 n n 
C9 C38 J53 sing 210 n n 
C37 C39 J53 sing 211 n n 
C38 C39 J53 sing 212 n n 
O3 H1 J53 sing 213 n n 
C29 H2 J53 sing 214 n n 
C30 H3 J53 sing 215 n n 
C30 H4 J53 sing 216 n n 
C32 H5 J53 sing 217 n n 
C32 H6 J53 sing 218 n n 
C32 H7 J53 sing 219 n n 
C26 H8 J53 sing 220 n n 
C26 H9 J53 sing 221 n n 
C24 H10 J53 sing 222 n n 
C23 H11 J53 sing 223 n n 
C34 H12 J53 sing 224 n n 
C34 H13 J53 sing 225 n n 
C33 H14 J53 sing 226 n n 
C33 H15 J53 sing 227 n n 
C28 H16 J53 sing 228 n n 
C28 H17 J53 sing 229 n n 
C27 H18 J53 sing 230 n n 
C27 H19 J53 sing 231 n n 
C27 H20 J53 sing 232 n n 
C22 H21 J53 sing 233 n n 
C19 H22 J53 sing 234 n n 
C19 H23 J53 sing 235 n n 
N H24 J53 sing 236 n n 
C4 H25 J53 sing 237 n n 
C8 H26 J53 sing 238 n n 
C5 H27 J53 sing 239 n n 
C2 H28 J53 sing 240 n n 
C41 H29 J53 sing 241 n n 
C41 H30 J53 sing 242 n n 
C37 H31 J53 sing 243 n n 
C40 H32 J53 sing 244 n n 
C40 H33 J53 sing 245 n n 
C39 H34 J53 sing 246 n n 
C39 H35 J53 sing 247 n n 
C38 H36 J53 sing 248 n n 
C9 H37 J53 sing 249 n n 
C9 H38 J53 sing 250 n n 
C42 H39 J53 sing 251 n n 
C42 H40 J53 sing 252 n n 
C12 H41 J53 sing 253 n n 
C11 H42 J53 sing 254 n n 
C11 H43 J53 sing 255 n n 
#
_atom_sites.entry_id                     3VJI 
_atom_sites.fract_transf_matrix[1][1]    0.010735 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002634 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016499 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008669 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           J53 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       J53 
_pdbx_nonpoly_scheme.auth_mon_id      J53 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 J53 . . . C 2 -18.622 19.042 -19.767 1 71.96 ? O4 J53 501 A 1 
HETATM 2 C C31 J53 . . . C 2 -18.929 18.469 -18.691 1 82.64 ? C31 J53 501 A 1 
HETATM 3 O O3 J53 . . . C 2 -19.163 17.242 -18.673 1 91.58 ? O3 J53 501 A 1 
HETATM 4 C C29 J53 . . . C 2 -19.026 19.242 -17.382 1 81.49 ? C29 J53 501 A 1 
HETATM 5 C C30 J53 . . . C 2 -20.193 20.241 -17.479 1 76.95 ? C30 J53 501 A 1 
HETATM 6 C C32 J53 . . . C 2 -19.963 21.334 -18.505 1 64.97 ? C32 J53 501 A 1 
HETATM 7 C C26 J53 . . . C 2 -19.185 18.328 -16.122 1 84.5 ? C26 J53 501 A 1 
HETATM 8 C C25 J53 . . . C 2 -17.887 18.132 -15.338 1 86.59 ? C25 J53 501 A 1 
HETATM 9 C C24 J53 . . . C 2 -16.706 17.951 -16.043 1 91.95 ? C24 J53 501 A 1 
HETATM 10 C C23 J53 . . . C 2 -15.493 17.779 -15.395 1 92.88 ? C23 J53 501 A 1 
HETATM 11 C C21 J53 . . . C 2 -15.405 17.773 -14.006 1 93.36 ? C21 J53 501 A 1 
HETATM 12 O O1 J53 . . . C 2 -14.155 17.584 -13.414 1 97.55 ? O1 J53 501 A 1 
HETATM 13 C C34 J53 . . . C 2 -13.041 16.999 -14.128 1 93.77 ? C34 J53 501 A 1 
HETATM 14 C C33 J53 . . . C 2 -11.883 16.543 -13.231 1 93.88 ? C33 J53 501 A 1 
HETATM 15 C C28 J53 . . . C 2 -10.813 15.785 -14.034 1 95.42 ? C28 J53 501 A 1 
HETATM 16 C C27 J53 . . . C 2 -9.826 15.03 -13.156 1 91.83 ? C27 J53 501 A 1 
HETATM 17 C C22 J53 . . . C 2 -17.821 18.128 -13.938 1 85.48 ? C22 J53 501 A 1 
HETATM 18 C C20 J53 . . . C 2 -16.588 17.966 -13.271 1 89.56 ? C20 J53 501 A 1 
HETATM 19 C C19 J53 . . . C 2 -16.543 17.961 -11.748 1 86.56 ? C19 J53 501 A 1 
HETATM 20 N N J53 . . . C 2 -16.631 19.281 -11.121 1 85.02 ? N J53 501 A 1 
HETATM 21 C C3 J53 . . . C 2 -15.598 19.937 -10.534 1 80.24 ? C3 J53 501 A 1 
HETATM 22 O O2 J53 . . . C 2 -14.473 19.459 -10.484 1 83.33 ? O2 J53 501 A 1 
HETATM 23 C C1 J53 . . . C 2 -15.817 21.285 -9.866 1 74.34 ? C1 J53 501 A 1 
HETATM 24 C C4 J53 . . . C 2 -17.029 21.488 -9.218 1 73.24 ? C4 J53 501 A 1 
HETATM 25 C C8 J53 . . . C 2 -17.317 22.677 -8.566 1 72.24 ? C8 J53 501 A 1 
HETATM 26 C C6 J53 . . . C 2 -16.397 23.725 -8.51 1 74.48 ? C6 J53 501 A 1 
HETATM 27 C C5 J53 . . . C 2 -15.158 23.527 -9.151 1 72.44 ? C5 J53 501 A 1 
HETATM 28 C C2 J53 . . . C 2 -14.868 22.319 -9.814 1 72.35 ? C2 J53 501 A 1 
HETATM 29 C C7 J53 . . . C 2 -16.78 25.004 -7.768 1 78.89 ? C7 J53 501 A 1 
HETATM 30 C C41 J53 . . . C 2 -15.611 25.531 -6.926 1 81.7 ? C41 J53 501 A 1 
HETATM 31 C C37 J53 . . . C 2 -15.995 26.813 -6.164 1 80.3 ? C37 J53 501 A 1 
HETATM 32 C C40 J53 . . . C 2 -16.418 27.901 -7.149 1 81.2 ? C40 J53 501 A 1 
HETATM 33 C C39 J53 . . . C 2 -17.158 26.533 -5.219 1 79.71 ? C39 J53 501 A 1 
HETATM 34 C C38 J53 . . . C 2 -18.346 26.03 -6.03 1 79.94 ? C38 J53 501 A 1 
HETATM 35 C C9 J53 . . . C 2 -17.961 24.766 -6.805 1 80.17 ? C9 J53 501 A 1 
HETATM 36 C C42 J53 . . . C 2 -18.76 27.109 -7.029 1 79.14 ? C42 J53 501 A 1 
HETATM 37 C C12 J53 . . . C 2 -17.595 27.393 -7.981 1 81.55 ? C12 J53 501 A 1 
HETATM 38 C C11 J53 . . . C 2 -17.191 26.117 -8.738 1 80.09 ? C11 J53 501 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#