data_3VJN # _model_server_result.job_id L_s2wOSWP5jZH-wRaNEEDQ _model_server_result.datetime_utc '2024-11-15 07:37:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vjn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 3VJN # _exptl.entry_id 3VJN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VJN _cell.length_a 143.946 _cell.length_b 143.946 _cell.length_c 143.946 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 143.946 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3VJN _atom_sites.fract_transf_matrix[1][1] 0.006947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 2001 2001 ANP ANP . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 6.114 44.259 25.301 1 200.91 ? PG ANP 2001 A 1 HETATM 2 O O1G ANP . . . B 2 6.808 45.106 26.296 1 200.91 ? O1G ANP 2001 A 1 HETATM 3 O O2G ANP . . . B 2 4.594 43.942 25.729 1 200.63 ? O2G ANP 2001 A 1 HETATM 4 O O3G ANP . . . B 2 6.828 42.826 25.127 1 200.74 ? O3G ANP 2001 A 1 HETATM 5 P PB ANP . . . B 2 5.631 46.488 23.935 1 200.06 ? PB ANP 2001 A 1 HETATM 6 O O1B ANP . . . B 2 6.681 47.322 24.563 1 200.23 ? O1B ANP 2001 A 1 HETATM 7 O O2B ANP . . . B 2 5.308 46.966 22.431 1 200.74 ? O2B ANP 2001 A 1 HETATM 8 N N3B ANP . . . B 2 6.051 44.925 23.822 1 200.91 ? N3B ANP 2001 A 1 HETATM 9 P PA ANP . . . B 2 3.318 47.834 24.692 1 178.25 ? PA ANP 2001 A 1 HETATM 10 O O1A ANP . . . B 2 2.264 47.807 25.731 1 182.31 ? O1A ANP 2001 A 1 HETATM 11 O O2A ANP . . . B 2 4.334 49.068 24.883 1 177.74 ? O2A ANP 2001 A 1 HETATM 12 O O3A ANP . . . B 2 4.23 46.51 24.725 1 189.1 ? O3A ANP 2001 A 1 HETATM 13 O O5' ANP . . . B 2 2.744 47.939 23.191 1 170.59 ? O5' ANP 2001 A 1 HETATM 14 C C5' ANP . . . B 2 2.327 46.761 22.495 1 151.13 ? C5' ANP 2001 A 1 HETATM 15 C C4' ANP . . . B 2 1.821 47.087 21.087 1 144.91 ? C4' ANP 2001 A 1 HETATM 16 O O4' ANP . . . B 2 0.718 48.01 21.193 1 136.29 ? O4' ANP 2001 A 1 HETATM 17 C C3' ANP . . . B 2 2.907 47.835 20.313 1 143.12 ? C3' ANP 2001 A 1 HETATM 18 O O3' ANP . . . B 2 2.621 47.784 18.915 1 147.74 ? O3' ANP 2001 A 1 HETATM 19 C C2' ANP . . . B 2 2.674 49.248 20.839 1 139.32 ? C2' ANP 2001 A 1 HETATM 20 O O2' ANP . . . B 2 3.276 50.194 19.953 1 141.59 ? O2' ANP 2001 A 1 HETATM 21 C C1' ANP . . . B 2 1.155 49.282 20.677 1 125.41 ? C1' ANP 2001 A 1 HETATM 22 N N9 ANP . . . B 2 0.543 50.397 21.437 1 97.97 ? N9 ANP 2001 A 1 HETATM 23 C C8 ANP . . . B 2 0.739 50.649 22.729 1 93.17 ? C8 ANP 2001 A 1 HETATM 24 N N7 ANP . . . B 2 0.008 51.699 23.101 1 84.22 ? N7 ANP 2001 A 1 HETATM 25 C C5 ANP . . . B 2 -0.661 52.121 22.032 1 80.48 ? C5 ANP 2001 A 1 HETATM 26 C C6 ANP . . . B 2 -1.579 53.141 21.812 1 72.28 ? C6 ANP 2001 A 1 HETATM 27 N N6 ANP . . . B 2 -1.903 53.968 22.803 1 44.25 ? N6 ANP 2001 A 1 HETATM 28 N N1 ANP . . . B 2 -2.105 53.287 20.588 1 48.55 ? N1 ANP 2001 A 1 HETATM 29 C C2 ANP . . . B 2 -1.755 52.485 19.6 1 55.83 ? C2 ANP 2001 A 1 HETATM 30 N N3 ANP . . . B 2 -0.882 51.509 19.771 1 64.59 ? N3 ANP 2001 A 1 HETATM 31 C C4 ANP . . . B 2 -0.32 51.295 20.968 1 82.51 ? C4 ANP 2001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #