data_3VJO # _model_server_result.job_id DNn4luYVPx6LoCsgh0etBw _model_server_result.datetime_utc '2024-10-19 10:16:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 3VJO # _exptl.entry_id 3VJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VJO _cell.length_a 143.36 _cell.length_b 143.36 _cell.length_c 143.36 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 143.36 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3VJO _atom_sites.fract_transf_matrix[1][1] 0.006975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 2001 2001 ANP ANP . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 43.96 6.177 -25.143 1 200.45 ? PG ANP 2001 A 1 HETATM 2 O O1G ANP . . . B 2 45.036 7.038 -25.685 1 200.45 ? O1G ANP 2001 A 1 HETATM 3 O O2G ANP . . . B 2 43.904 4.741 -25.871 1 200.45 ? O2G ANP 2001 A 1 HETATM 4 O O3G ANP . . . B 2 42.503 6.828 -25.36 1 200.45 ? O3G ANP 2001 A 1 HETATM 5 P PB ANP . . . B 2 45.527 5.201 -23.212 1 195.08 ? PB ANP 2001 A 1 HETATM 6 O O1B ANP . . . B 2 46.671 6.034 -23.646 1 199.97 ? O1B ANP 2001 A 1 HETATM 7 O O2B ANP . . . B 2 45.533 4.952 -21.621 1 192.93 ? O2B ANP 2001 A 1 HETATM 8 N N3B ANP . . . B 2 44.095 5.886 -23.552 1 200.45 ? N3B ANP 2001 A 1 HETATM 9 P PA ANP . . . B 2 46.851 2.898 -24.054 1 164.41 ? PA ANP 2001 A 1 HETATM 10 O O1A ANP . . . B 2 46.771 1.912 -25.155 1 167.41 ? O1A ANP 2001 A 1 HETATM 11 O O2A ANP . . . B 2 48.028 3.973 -24.279 1 167.77 ? O2A ANP 2001 A 1 HETATM 12 O O3A ANP . . . B 2 45.493 3.746 -23.899 1 179.32 ? O3A ANP 2001 A 1 HETATM 13 O O5' ANP . . . B 2 47.105 2.237 -22.609 1 149.87 ? O5' ANP 2001 A 1 HETATM 14 C C5' ANP . . . B 2 45.99 1.93 -21.769 1 123.06 ? C5' ANP 2001 A 1 HETATM 15 C C4' ANP . . . B 2 46.452 1.533 -20.366 1 117.5 ? C4' ANP 2001 A 1 HETATM 16 O O4' ANP . . . B 2 47.392 0.449 -20.493 1 110.93 ? O4' ANP 2001 A 1 HETATM 17 C C3' ANP . . . B 2 47.242 2.695 -19.758 1 115.25 ? C3' ANP 2001 A 1 HETATM 18 O O3' ANP . . . B 2 47.332 2.526 -18.341 1 113.54 ? O3' ANP 2001 A 1 HETATM 19 C C2' ANP . . . B 2 48.608 2.452 -20.394 1 117.81 ? C2' ANP 2001 A 1 HETATM 20 O O2' ANP . . . B 2 49.611 3.139 -19.64 1 115.54 ? O2' ANP 2001 A 1 HETATM 21 C C1' ANP . . . B 2 48.691 0.949 -20.126 1 111.62 ? C1' ANP 2001 A 1 HETATM 22 N N9 ANP . . . B 2 49.758 0.297 -20.923 1 95.12 ? N9 ANP 2001 A 1 HETATM 23 C C8 ANP . . . B 2 49.923 0.415 -22.239 1 90.07 ? C8 ANP 2001 A 1 HETATM 24 N N7 ANP . . . B 2 50.963 -0.324 -22.626 1 82.48 ? N7 ANP 2001 A 1 HETATM 25 C C5 ANP . . . B 2 51.464 -0.915 -21.549 1 74.25 ? C5 ANP 2001 A 1 HETATM 26 C C6 ANP . . . B 2 52.529 -1.785 -21.334 1 61.36 ? C6 ANP 2001 A 1 HETATM 27 N N6 ANP . . . B 2 53.292 -2.174 -22.35 1 63.47 ? N6 ANP 2001 A 1 HETATM 28 N N1 ANP . . . B 2 52.776 -2.21 -20.083 1 45.63 ? N1 ANP 2001 A 1 HETATM 29 C C2 ANP . . . B 2 52.026 -1.813 -19.074 1 61.93 ? C2 ANP 2001 A 1 HETATM 30 N N3 ANP . . . B 2 51.004 -0.985 -19.24 1 59.03 ? N3 ANP 2001 A 1 HETATM 31 C C4 ANP . . . B 2 50.698 -0.52 -20.459 1 79.51 ? C4 ANP 2001 A 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #