data_3VJS
#
_model_server_result.job_id            LYhfDrnwpOO1MihnmUz37A 
_model_server_result.datetime_utc      '2024-11-16 11:38:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vjs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    3VJS 
#
_exptl.entry_id    3VJS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              418.623 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(2-[(S)-2,4-Dihydroxybutoxy]ethyl)-12-(5-ethyl-5-hydroxyheptyl)-1,12-dicarba-closo-dodecaborane 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.28 
_cell.angle_gamma         90 
_cell.entry_id            3VJS 
_cell.length_a            154.605 
_cell.length_b            43.292 
_cell.length_c            42.085 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VJS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H42 B10 O4' 
_chem_comp.formula_weight    418.623 
_chem_comp.id                10S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(2-[(S)-2,4-Dihydroxybutoxy]ethyl)-12-(5-ethyl-5-hydroxyheptyl)-1,12-dicarba-closo-dodecaborane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
B1 B2 10S sing 1 n n 
B1 B5 10S sing 2 n n 
B1 B6 10S sing 3 n n 
B1 B10 10S sing 4 n n 
B1 C21 10S sing 5 n n 
B1 HB1 10S sing 6 n n 
C1 C2 10S sing 7 n n 
C1 B6 10S sing 8 n n 
C1 B7 10S sing 9 n n 
C1 B8 10S sing 10 n n 
C1 B9 10S sing 11 n n 
C1 B10 10S sing 12 n n 
O1 C9 10S sing 13 n n 
O1 HO1 10S sing 14 n n 
B2 B3 10S sing 15 n n 
B2 B6 10S sing 16 n n 
B2 B7 10S sing 17 n n 
B2 C21 10S sing 18 n n 
B2 HB2 10S sing 19 n n 
C2 C3 10S sing 20 n n 
C2 H2 10S sing 21 n n 
C2 H2A 10S sing 22 n n 
O2 C23 10S sing 23 n n 
O2 C24 10S sing 24 n n 
B3 B4 10S sing 25 n n 
B3 B7 10S sing 26 n n 
B3 B8 10S sing 27 n n 
B3 C21 10S sing 28 n n 
B3 HB3 10S sing 29 n n 
C3 C4 10S sing 30 n n 
C3 H3 10S sing 31 n n 
C3 H3A 10S sing 32 n n 
O3 C25 10S sing 33 n n 
O3 HO3 10S sing 34 n n 
B4 B5 10S sing 35 n n 
B4 B8 10S sing 36 n n 
B4 B9 10S sing 37 n n 
B4 C21 10S sing 38 n n 
B4 HB4 10S sing 39 n n 
C4 C5 10S sing 40 n n 
C4 H4 10S sing 41 n n 
C4 H4A 10S sing 42 n n 
O4 C27 10S sing 43 n n 
O4 HO4 10S sing 44 n n 
B5 B9 10S sing 45 n n 
B5 B10 10S sing 46 n n 
B5 C21 10S sing 47 n n 
B5 HB5 10S sing 48 n n 
C5 C9 10S sing 49 n n 
C5 H5 10S sing 50 n n 
C5 H5A 10S sing 51 n n 
B6 B7 10S sing 52 n n 
B6 B10 10S sing 53 n n 
B6 HB6 10S sing 54 n n 
C6 C9 10S sing 55 n n 
C6 C10 10S sing 56 n n 
C6 H6 10S sing 57 n n 
C6 H6A 10S sing 58 n n 
B7 B8 10S sing 59 n n 
B7 HB7 10S sing 60 n n 
C7 C8 10S sing 61 n n 
C7 C9 10S sing 62 n n 
C7 H7 10S sing 63 n n 
C7 H7A 10S sing 64 n n 
B8 B9 10S sing 65 n n 
B8 HB8 10S sing 66 n n 
C8 H8 10S sing 67 n n 
C8 H8A 10S sing 68 n n 
C8 H8B 10S sing 69 n n 
B9 B10 10S sing 70 n n 
B9 HB9 10S sing 71 n n 
B10 HB10 10S sing 72 n n 
C10 H10 10S sing 73 n n 
C10 H10A 10S sing 74 n n 
C10 H10B 10S sing 75 n n 
C21 C22 10S sing 76 n n 
C22 C23 10S sing 77 n n 
C22 H22 10S sing 78 n n 
C22 H22A 10S sing 79 n n 
C23 H23 10S sing 80 n n 
C23 H23A 10S sing 81 n n 
C24 C25 10S sing 82 n n 
C24 H24 10S sing 83 n n 
C24 H24A 10S sing 84 n n 
C25 C26 10S sing 85 n n 
C25 H25 10S sing 86 n n 
C26 C27 10S sing 87 n n 
C26 H26 10S sing 88 n n 
C26 H26A 10S sing 89 n n 
C27 H27 10S sing 90 n n 
C27 H27A 10S sing 91 n n 
#
_atom_sites.entry_id                     3VJS 
_atom_sites.fract_transf_matrix[1][1]    0.006468 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000597 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023099 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023862 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 10S A 1 501 1 10S 177 . 
D 4 HOH A 1 601 2 HOH HOH . 
D 4 HOH A 2 602 3 HOH HOH . 
D 4 HOH A 3 603 4 HOH HOH . 
D 4 HOH A 4 604 5 HOH HOH . 
D 4 HOH A 5 605 6 HOH HOH . 
D 4 HOH A 6 606 7 HOH HOH . 
D 4 HOH A 7 607 8 HOH HOH . 
D 4 HOH A 8 608 9 HOH HOH . 
D 4 HOH A 9 609 10 HOH HOH . 
D 4 HOH A 10 610 11 HOH HOH . 
D 4 HOH A 11 611 12 HOH HOH . 
D 4 HOH A 12 612 13 HOH HOH . 
D 4 HOH A 13 613 14 HOH HOH . 
D 4 HOH A 14 614 15 HOH HOH . 
D 4 HOH A 15 615 16 HOH HOH . 
D 4 HOH A 16 616 17 HOH HOH . 
D 4 HOH A 17 617 18 HOH HOH . 
D 4 HOH A 18 618 19 HOH HOH . 
D 4 HOH A 19 619 20 HOH HOH . 
D 4 HOH A 20 620 21 HOH HOH . 
D 4 HOH A 21 621 22 HOH HOH . 
D 4 HOH A 22 622 23 HOH HOH . 
D 4 HOH A 23 623 24 HOH HOH . 
D 4 HOH A 24 624 25 HOH HOH . 
D 4 HOH A 25 625 26 HOH HOH . 
D 4 HOH A 26 626 27 HOH HOH . 
D 4 HOH A 27 627 29 HOH HOH . 
D 4 HOH A 28 628 30 HOH HOH . 
D 4 HOH A 29 629 32 HOH HOH . 
D 4 HOH A 30 630 33 HOH HOH . 
D 4 HOH A 31 631 34 HOH HOH . 
D 4 HOH A 32 632 35 HOH HOH . 
D 4 HOH A 33 633 36 HOH HOH . 
D 4 HOH A 34 634 37 HOH HOH . 
D 4 HOH A 35 635 38 HOH HOH . 
D 4 HOH A 36 636 39 HOH HOH . 
D 4 HOH A 37 637 40 HOH HOH . 
D 4 HOH A 38 638 42 HOH HOH . 
D 4 HOH A 39 639 43 HOH HOH . 
D 4 HOH A 40 640 44 HOH HOH . 
D 4 HOH A 41 641 45 HOH HOH . 
D 4 HOH A 42 642 46 HOH HOH . 
D 4 HOH A 43 643 47 HOH HOH . 
D 4 HOH A 44 644 48 HOH HOH . 
D 4 HOH A 45 645 49 HOH HOH . 
D 4 HOH A 46 646 50 HOH HOH . 
D 4 HOH A 47 647 51 HOH HOH . 
D 4 HOH A 48 648 52 HOH HOH . 
D 4 HOH A 49 649 53 HOH HOH . 
D 4 HOH A 50 650 54 HOH HOH . 
D 4 HOH A 51 651 55 HOH HOH . 
D 4 HOH A 52 652 56 HOH HOH . 
D 4 HOH A 53 653 57 HOH HOH . 
D 4 HOH A 54 654 58 HOH HOH . 
D 4 HOH A 55 655 59 HOH HOH . 
D 4 HOH A 56 656 60 HOH HOH . 
D 4 HOH A 57 657 61 HOH HOH . 
D 4 HOH A 58 658 62 HOH HOH . 
D 4 HOH A 59 659 63 HOH HOH . 
D 4 HOH A 60 660 64 HOH HOH . 
D 4 HOH A 61 661 65 HOH HOH . 
D 4 HOH A 62 662 66 HOH HOH . 
D 4 HOH A 63 663 1 HOH HOH . 
E 4 HOH C 1 701 28 HOH HOH . 
E 4 HOH C 2 702 31 HOH HOH . 
E 4 HOH C 3 703 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B1 10S . . . C 3 13.179 5.57 25.62 1 32.85 ? B1 10S 501 A 1 
HETATM 2 C C1 10S . . . C 3 13.48 2.737 25.909 1 32.88 ? C1 10S 501 A 1 
HETATM 3 O O1 10S . . . C 3 9.857 -2.158 28.564 1 35.05 ? O1 10S 501 A 1 
HETATM 4 B B2 10S . . . C 3 13.498 4.84 24.076 1 32.65 ? B2 10S 501 A 1 
HETATM 5 C C2 10S . . . C 3 12.854 1.36 26.24 1 32.8 ? C2 10S 501 A 1 
HETATM 6 O O2 10S . . . C 3 15.346 7.348 22.114 1 39.14 ? O2 10S 501 A 1 
HETATM 7 B B3 10S . . . C 3 15.104 4.166 24.025 1 32.03 ? B3 10S 501 A 1 
HETATM 8 C C3 10S . . . C 3 11.496 1.502 26.932 1 27.33 ? C3 10S 501 A 1 
HETATM 9 O O3 10S . . . C 3 16.718 8.244 19.739 1 35.51 ? O3 10S 501 A 1 
HETATM 10 B B4 10S . . . C 3 15.808 4.418 25.624 1 33.62 ? B4 10S 501 A 1 
HETATM 11 C C4 10S . . . C 3 11.047 0.11 27.397 1 31.23 ? C4 10S 501 A 1 
HETATM 12 O O4 10S . . . C 3 14.52 4.263 18.551 1 37.76 ? O4 10S 501 A 1 
HETATM 13 B B5 10S . . . C 3 14.613 5.292 26.615 1 33.33 ? B5 10S 501 A 1 
HETATM 14 C C5 10S . . . C 3 9.591 0.154 27.872 1 32.22 ? C5 10S 501 A 1 
HETATM 15 B B6 10S . . . C 3 12.468 4.008 25.176 1 33.91 ? B6 10S 501 A 1 
HETATM 16 C C6 10S . . . C 3 8.646 -1.809 26.557 1 37.6 ? C6 10S 501 A 1 
HETATM 17 B B7 10S . . . C 3 13.668 3.131 24.189 1 32.61 ? B7 10S 501 A 1 
HETATM 18 C C7 10S . . . C 3 7.71 -1.124 28.874 1 36.48 ? C7 10S 501 A 1 
HETATM 19 B B8 10S . . . C 3 15.117 2.838 25.183 1 32.94 ? B8 10S 501 A 1 
HETATM 20 C C8 10S . . . C 3 7.099 -2.494 29.207 1 36.55 ? C8 10S 501 A 1 
HETATM 21 B B9 10S . . . C 3 14.811 3.544 26.8 1 33.66 ? B9 10S 501 A 1 
HETATM 22 C C9 10S . . . C 3 8.96 -1.247 27.962 1 35.97 ? C9 10S 501 A 1 
HETATM 23 B B10 10S . . . C 3 13.172 4.269 26.797 1 33.67 ? B10 10S 501 A 1 
HETATM 24 C C10 10S . . . C 3 7.64 -0.952 25.781 1 32.63 ? C10 10S 501 A 1 
HETATM 25 C C21 10S . . . C 3 14.777 5.609 24.929 1 33.85 ? C21 10S 501 A 1 
HETATM 26 C C22 10S . . . C 3 15.261 6.997 24.447 1 34.03 ? C22 10S 501 A 1 
HETATM 27 C C23 10S . . . C 3 14.477 7.429 23.217 1 33.01 ? C23 10S 501 A 1 
HETATM 28 C C24 10S . . . C 3 14.709 7.998 21.05 1 39.08 ? C24 10S 501 A 1 
HETATM 29 C C25 10S . . . C 3 15.431 7.674 19.752 1 39.12 ? C25 10S 501 A 1 
HETATM 30 C C26 10S . . . C 3 15.567 6.167 19.552 1 38.33 ? C26 10S 501 A 1 
HETATM 31 C C27 10S . . . C 3 14.346 5.633 18.833 1 40.13 ? C27 10S 501 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#