data_3VKK
#
_model_server_result.job_id            ctGcj7T8S4p8VJU_vbnF7A 
_model_server_result.datetime_utc      '2024-11-25 00:48:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vkk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":472}' 
#
_entry.id    3VKK 
#
_exptl.entry_id    3VKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VKK 
_cell.length_a            65.733 
_cell.length_b            83.519 
_cell.length_c            90.892 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 D N N 
? 2 H N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OE1 
_struct_conn.ptnr1_label_comp_id            GLU 
_struct_conn.ptnr1_label_seq_id             373 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             GLU 
_struct_conn.ptnr1_auth_seq_id              373 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            I 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            MAN 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             MAN 
_struct_conn.ptnr2_auth_seq_id              477 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.373 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3VKK 
_atom_sites.fract_transf_matrix[1][1]    0.015213 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011973 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 470 1 GOL GOL . 
C 3 CL A 1 471 1 CL CL . 
D 2 GOL A 1 472 1 GOL GOL . 
E 3 CL A 1 473 1 CL CL . 
F 4 PLM A 1 474 1 PLM PLM . 
G 5 OLA A 1 475 1 OLA OLA . 
H 2 GOL A 1 476 1 GOL GOL . 
I 6 MAN A 1 477 1 MAN MAN . 
J 7 MG A 1 478 1 MG MG . 
K 8 HOH A 1 479 1 HOH HOH . 
K 8 HOH A 2 480 3 HOH HOH . 
K 8 HOH A 3 481 5 HOH HOH . 
K 8 HOH A 4 482 7 HOH HOH . 
K 8 HOH A 5 483 8 HOH HOH . 
K 8 HOH A 6 484 9 HOH HOH . 
K 8 HOH A 7 485 11 HOH HOH . 
K 8 HOH A 8 486 12 HOH HOH . 
K 8 HOH A 9 487 14 HOH HOH . 
K 8 HOH A 10 488 15 HOH HOH . 
K 8 HOH A 11 489 16 HOH HOH . 
K 8 HOH A 12 490 17 HOH HOH . 
K 8 HOH A 13 491 18 HOH HOH . 
K 8 HOH A 14 492 19 HOH HOH . 
K 8 HOH A 15 493 20 HOH HOH . 
K 8 HOH A 16 494 21 HOH HOH . 
K 8 HOH A 17 495 22 HOH HOH . 
K 8 HOH A 18 496 23 HOH HOH . 
K 8 HOH A 19 497 24 HOH HOH . 
K 8 HOH A 20 498 25 HOH HOH . 
K 8 HOH A 21 499 26 HOH HOH . 
K 8 HOH A 22 500 27 HOH HOH . 
K 8 HOH A 23 501 28 HOH HOH . 
K 8 HOH A 24 502 29 HOH HOH . 
K 8 HOH A 25 503 30 HOH HOH . 
K 8 HOH A 26 504 31 HOH HOH . 
K 8 HOH A 27 505 32 HOH HOH . 
K 8 HOH A 28 506 33 HOH HOH . 
K 8 HOH A 29 507 34 HOH HOH . 
K 8 HOH A 30 508 35 HOH HOH . 
K 8 HOH A 31 509 36 HOH HOH . 
K 8 HOH A 32 510 37 HOH HOH . 
K 8 HOH A 33 511 38 HOH HOH . 
K 8 HOH A 34 512 39 HOH HOH . 
K 8 HOH A 35 513 40 HOH HOH . 
K 8 HOH A 36 514 41 HOH HOH . 
K 8 HOH A 37 515 42 HOH HOH . 
K 8 HOH A 38 516 43 HOH HOH . 
K 8 HOH A 39 517 44 HOH HOH . 
K 8 HOH A 40 518 45 HOH HOH . 
K 8 HOH A 41 519 46 HOH HOH . 
K 8 HOH A 42 520 47 HOH HOH . 
K 8 HOH A 43 521 48 HOH HOH . 
K 8 HOH A 44 522 49 HOH HOH . 
K 8 HOH A 45 523 50 HOH HOH . 
K 8 HOH A 46 524 52 HOH HOH . 
K 8 HOH A 47 525 53 HOH HOH . 
K 8 HOH A 48 526 55 HOH HOH . 
K 8 HOH A 49 527 56 HOH HOH . 
K 8 HOH A 50 528 57 HOH HOH . 
K 8 HOH A 51 529 58 HOH HOH . 
K 8 HOH A 52 530 59 HOH HOH . 
K 8 HOH A 53 531 60 HOH HOH . 
K 8 HOH A 54 532 61 HOH HOH . 
K 8 HOH A 55 533 62 HOH HOH . 
K 8 HOH A 56 534 63 HOH HOH . 
K 8 HOH A 57 535 64 HOH HOH . 
K 8 HOH A 58 536 66 HOH HOH . 
K 8 HOH A 59 537 67 HOH HOH . 
K 8 HOH A 60 538 68 HOH HOH . 
K 8 HOH A 61 539 69 HOH HOH . 
K 8 HOH A 62 540 70 HOH HOH . 
K 8 HOH A 63 541 71 HOH HOH . 
K 8 HOH A 64 542 72 HOH HOH . 
K 8 HOH A 65 543 73 HOH HOH . 
K 8 HOH A 66 544 74 HOH HOH . 
K 8 HOH A 67 545 75 HOH HOH . 
K 8 HOH A 68 546 76 HOH HOH . 
K 8 HOH A 69 547 77 HOH HOH . 
K 8 HOH A 70 548 78 HOH HOH . 
K 8 HOH A 71 549 79 HOH HOH . 
K 8 HOH A 72 550 80 HOH HOH . 
K 8 HOH A 73 551 81 HOH HOH . 
K 8 HOH A 74 552 82 HOH HOH . 
K 8 HOH A 75 553 83 HOH HOH . 
K 8 HOH A 76 554 84 HOH HOH . 
K 8 HOH A 77 555 85 HOH HOH . 
K 8 HOH A 78 556 86 HOH HOH . 
K 8 HOH A 79 557 87 HOH HOH . 
K 8 HOH A 80 558 88 HOH HOH . 
K 8 HOH A 81 559 89 HOH HOH . 
K 8 HOH A 82 560 90 HOH HOH . 
K 8 HOH A 83 561 91 HOH HOH . 
K 8 HOH A 84 562 92 HOH HOH . 
K 8 HOH A 85 563 94 HOH HOH . 
K 8 HOH A 86 564 95 HOH HOH . 
K 8 HOH A 87 565 97 HOH HOH . 
K 8 HOH A 88 566 98 HOH HOH . 
K 8 HOH A 89 567 99 HOH HOH . 
K 8 HOH A 90 568 100 HOH HOH . 
K 8 HOH A 91 569 101 HOH HOH . 
K 8 HOH A 92 570 102 HOH HOH . 
K 8 HOH A 93 571 103 HOH HOH . 
K 8 HOH A 94 572 104 HOH HOH . 
K 8 HOH A 95 573 105 HOH HOH . 
K 8 HOH A 96 574 106 HOH HOH . 
K 8 HOH A 97 575 107 HOH HOH . 
K 8 HOH A 98 576 108 HOH HOH . 
K 8 HOH A 99 577 109 HOH HOH . 
K 8 HOH A 100 578 110 HOH HOH . 
K 8 HOH A 101 579 111 HOH HOH . 
K 8 HOH A 102 580 112 HOH HOH . 
K 8 HOH A 103 581 113 HOH HOH . 
K 8 HOH A 104 582 115 HOH HOH . 
K 8 HOH A 105 583 116 HOH HOH . 
K 8 HOH A 106 584 117 HOH HOH . 
K 8 HOH A 107 585 118 HOH HOH . 
K 8 HOH A 108 586 119 HOH HOH . 
K 8 HOH A 109 587 121 HOH HOH . 
K 8 HOH A 110 588 122 HOH HOH . 
K 8 HOH A 111 589 123 HOH HOH . 
K 8 HOH A 112 590 124 HOH HOH . 
K 8 HOH A 113 591 125 HOH HOH . 
K 8 HOH A 114 592 127 HOH HOH . 
K 8 HOH A 115 593 128 HOH HOH . 
K 8 HOH A 116 594 129 HOH HOH . 
K 8 HOH A 117 595 130 HOH HOH . 
K 8 HOH A 118 596 131 HOH HOH . 
K 8 HOH A 119 597 132 HOH HOH . 
K 8 HOH A 120 598 133 HOH HOH . 
K 8 HOH A 121 599 134 HOH HOH . 
K 8 HOH A 122 600 135 HOH HOH . 
K 8 HOH A 123 601 136 HOH HOH . 
K 8 HOH A 124 602 137 HOH HOH . 
K 8 HOH A 125 603 138 HOH HOH . 
K 8 HOH A 126 604 139 HOH HOH . 
K 8 HOH A 127 605 141 HOH HOH . 
K 8 HOH A 128 606 142 HOH HOH . 
K 8 HOH A 129 607 143 HOH HOH . 
K 8 HOH A 130 608 145 HOH HOH . 
K 8 HOH A 131 609 148 HOH HOH . 
K 8 HOH A 132 610 149 HOH HOH . 
K 8 HOH A 133 611 151 HOH HOH . 
K 8 HOH A 134 612 152 HOH HOH . 
K 8 HOH A 135 613 155 HOH HOH . 
K 8 HOH A 136 614 156 HOH HOH . 
K 8 HOH A 137 615 157 HOH HOH . 
K 8 HOH A 138 616 158 HOH HOH . 
K 8 HOH A 139 617 159 HOH HOH . 
K 8 HOH A 140 618 160 HOH HOH . 
K 8 HOH A 141 619 161 HOH HOH . 
K 8 HOH A 142 620 162 HOH HOH . 
K 8 HOH A 143 621 163 HOH HOH . 
K 8 HOH A 144 622 164 HOH HOH . 
K 8 HOH A 145 623 166 HOH HOH . 
K 8 HOH A 146 624 168 HOH HOH . 
K 8 HOH A 147 625 169 HOH HOH . 
K 8 HOH A 148 626 170 HOH HOH . 
K 8 HOH A 149 627 171 HOH HOH . 
K 8 HOH A 150 628 172 HOH HOH . 
K 8 HOH A 151 629 174 HOH HOH . 
K 8 HOH A 152 630 175 HOH HOH . 
K 8 HOH A 153 631 176 HOH HOH . 
K 8 HOH A 154 632 178 HOH HOH . 
K 8 HOH A 155 633 180 HOH HOH . 
K 8 HOH A 156 634 181 HOH HOH . 
K 8 HOH A 157 635 186 HOH HOH . 
K 8 HOH A 158 636 187 HOH HOH . 
K 8 HOH A 159 637 189 HOH HOH . 
K 8 HOH A 160 638 190 HOH HOH . 
K 8 HOH A 161 639 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -9.17 -18.564 -9.482 1 53.23 ? C1 GOL 472 A 1 
HETATM 2 O O1 GOL . . . D 2 -10.061 -19.508 -8.906 1 50.89 ? O1 GOL 472 A 1 
HETATM 3 C C2 GOL . . . D 2 -7.798 -18.9 -8.921 1 51.47 ? C2 GOL 472 A 1 
HETATM 4 O O2 GOL . . . D 2 -6.756 -17.983 -9.231 1 53.32 ? O2 GOL 472 A 1 
HETATM 5 C C3 GOL . . . D 2 -7.493 -20.286 -9.458 1 48.19 ? C3 GOL 472 A 1 
HETATM 6 O O3 GOL . . . D 2 -7.634 -21.195 -8.409 1 41.49 ? O3 GOL 472 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#