data_3VKO # _model_server_result.job_id NMkI1aBh6V-oSODLmprHUg _model_server_result.datetime_utc '2024-12-26 11:49:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 3VKO # _exptl.entry_id 3VKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VKO _cell.length_a 54.71 _cell.length_b 61.5 _cell.length_c 84.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F 1 1 B,D,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 SIA GAL C2 O2 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 502 NAG 2 n C GAL 2 C 2 GAL A 501 GAL 2 n C SIA 3 C 3 SIA A 500 SIA 2 n D NAG 1 D 1 NAG B 502 NAG 2 n D GAL 2 D 2 GAL B 501 GAL 2 n D SIA 3 D 3 SIA B 500 SIA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 NAG . C NAG 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale2 C O3 GAL . C GAL 2 1_555 C C2 SIA . C SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 GAL . D GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale4 D O3 GAL . D GAL 2 1_555 D C2 SIA . D SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VKO _atom_sites.fract_transf_matrix[1][1] 0.018278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CL A 1 204 1 CL CL . F 4 HOH A 1 301 2 HOH HOH . F 4 HOH A 2 302 4 HOH HOH . F 4 HOH A 3 303 7 HOH HOH . F 4 HOH A 4 304 8 HOH HOH . F 4 HOH A 5 305 9 HOH HOH . F 4 HOH A 6 306 10 HOH HOH . F 4 HOH A 7 307 11 HOH HOH . F 4 HOH A 8 308 14 HOH HOH . F 4 HOH A 9 309 15 HOH HOH . F 4 HOH A 10 310 16 HOH HOH . F 4 HOH A 11 311 18 HOH HOH . F 4 HOH A 12 312 20 HOH HOH . F 4 HOH A 13 313 21 HOH HOH . F 4 HOH A 14 314 22 HOH HOH . F 4 HOH A 15 315 23 HOH HOH . F 4 HOH A 16 316 27 HOH HOH . F 4 HOH A 17 317 28 HOH HOH . F 4 HOH A 18 318 31 HOH HOH . F 4 HOH A 19 319 34 HOH HOH . F 4 HOH A 20 320 35 HOH HOH . F 4 HOH A 21 321 36 HOH HOH . F 4 HOH A 22 322 37 HOH HOH . F 4 HOH A 23 323 39 HOH HOH . F 4 HOH A 24 324 40 HOH HOH . F 4 HOH A 25 325 45 HOH HOH . F 4 HOH A 26 326 46 HOH HOH . F 4 HOH A 27 327 48 HOH HOH . F 4 HOH A 28 328 50 HOH HOH . F 4 HOH A 29 329 52 HOH HOH . F 4 HOH A 30 330 61 HOH HOH . F 4 HOH A 31 331 62 HOH HOH . F 4 HOH A 32 332 64 HOH HOH . F 4 HOH A 33 333 65 HOH HOH . F 4 HOH A 34 334 67 HOH HOH . F 4 HOH A 35 335 69 HOH HOH . F 4 HOH A 36 336 70 HOH HOH . F 4 HOH A 37 337 72 HOH HOH . F 4 HOH A 38 338 74 HOH HOH . F 4 HOH A 39 339 77 HOH HOH . F 4 HOH A 40 340 79 HOH HOH . F 4 HOH A 41 341 80 HOH HOH . F 4 HOH A 42 342 82 HOH HOH . F 4 HOH A 43 343 84 HOH HOH . F 4 HOH A 44 344 85 HOH HOH . F 4 HOH A 45 345 86 HOH HOH . F 4 HOH A 46 346 87 HOH HOH . F 4 HOH A 47 347 88 HOH HOH . F 4 HOH A 48 348 90 HOH HOH . F 4 HOH A 49 349 91 HOH HOH . F 4 HOH A 50 350 92 HOH HOH . F 4 HOH A 51 351 93 HOH HOH . F 4 HOH A 52 352 95 HOH HOH . F 4 HOH A 53 353 96 HOH HOH . F 4 HOH A 54 354 97 HOH HOH . F 4 HOH A 55 355 100 HOH HOH . F 4 HOH A 56 356 101 HOH HOH . F 4 HOH A 57 357 105 HOH HOH . F 4 HOH A 58 358 106 HOH HOH . F 4 HOH A 59 359 107 HOH HOH . F 4 HOH A 60 360 109 HOH HOH . F 4 HOH A 61 361 111 HOH HOH . F 4 HOH A 62 362 112 HOH HOH . F 4 HOH A 63 363 113 HOH HOH . F 4 HOH A 64 364 114 HOH HOH . F 4 HOH A 65 365 116 HOH HOH . F 4 HOH A 66 366 117 HOH HOH . F 4 HOH A 67 367 118 HOH HOH . F 4 HOH A 68 368 119 HOH HOH . F 4 HOH A 69 369 120 HOH HOH . F 4 HOH A 70 370 124 HOH HOH . F 4 HOH A 71 371 125 HOH HOH . F 4 HOH A 72 372 126 HOH HOH . F 4 HOH A 73 373 131 HOH HOH . F 4 HOH A 74 374 132 HOH HOH . F 4 HOH A 75 375 133 HOH HOH . F 4 HOH A 76 376 134 HOH HOH . F 4 HOH A 77 377 137 HOH HOH . F 4 HOH A 78 378 140 HOH HOH . F 4 HOH A 79 379 142 HOH HOH . F 4 HOH A 80 380 150 HOH HOH . F 4 HOH A 81 381 151 HOH HOH . F 4 HOH A 82 382 152 HOH HOH . F 4 HOH A 83 383 153 HOH HOH . F 4 HOH A 84 384 154 HOH HOH . F 4 HOH A 85 385 156 HOH HOH . F 4 HOH A 86 386 157 HOH HOH . F 4 HOH A 87 387 158 HOH HOH . F 4 HOH A 88 388 161 HOH HOH . F 4 HOH A 89 389 164 HOH HOH . F 4 HOH A 90 390 166 HOH HOH . F 4 HOH A 91 391 168 HOH HOH . F 4 HOH A 92 392 169 HOH HOH . F 4 HOH A 93 393 170 HOH HOH . F 4 HOH A 94 394 171 HOH HOH . F 4 HOH A 95 395 173 HOH HOH . F 4 HOH A 96 396 174 HOH HOH . F 4 HOH A 97 397 175 HOH HOH . F 4 HOH A 98 398 176 HOH HOH . F 4 HOH A 99 399 177 HOH HOH . F 4 HOH A 100 400 178 HOH HOH . F 4 HOH A 101 401 182 HOH HOH . F 4 HOH A 102 402 183 HOH HOH . F 4 HOH A 103 403 185 HOH HOH . F 4 HOH A 104 404 186 HOH HOH . F 4 HOH A 105 405 187 HOH HOH . F 4 HOH A 106 406 191 HOH HOH . F 4 HOH A 107 407 192 HOH HOH . F 4 HOH A 108 408 193 HOH HOH . F 4 HOH A 109 409 194 HOH HOH . F 4 HOH A 110 410 195 HOH HOH . F 4 HOH A 111 411 196 HOH HOH . F 4 HOH A 112 412 197 HOH HOH . F 4 HOH A 113 413 198 HOH HOH . F 4 HOH A 114 414 200 HOH HOH . F 4 HOH A 115 415 201 HOH HOH . F 4 HOH A 116 416 203 HOH HOH . F 4 HOH A 117 417 204 HOH HOH . F 4 HOH A 118 418 206 HOH HOH . F 4 HOH A 119 419 207 HOH HOH . F 4 HOH A 120 420 209 HOH HOH . F 4 HOH A 121 421 210 HOH HOH . F 4 HOH A 122 422 211 HOH HOH . F 4 HOH A 123 423 213 HOH HOH . F 4 HOH A 124 424 215 HOH HOH . F 4 HOH A 125 425 216 HOH HOH . F 4 HOH A 126 426 217 HOH HOH . F 4 HOH A 127 427 218 HOH HOH . F 4 HOH A 128 428 220 HOH HOH . F 4 HOH A 129 429 225 HOH HOH . F 4 HOH A 130 430 227 HOH HOH . F 4 HOH A 131 431 228 HOH HOH . F 4 HOH A 132 432 229 HOH HOH . F 4 HOH A 133 433 230 HOH HOH . F 4 HOH A 134 434 231 HOH HOH . F 4 HOH A 135 435 232 HOH HOH . F 4 HOH A 136 436 236 HOH HOH . F 4 HOH A 137 437 238 HOH HOH . F 4 HOH A 138 438 239 HOH HOH . F 4 HOH A 139 439 240 HOH HOH . F 4 HOH A 140 440 241 HOH HOH . F 4 HOH A 141 441 242 HOH HOH . F 4 HOH A 142 442 246 HOH HOH . G 4 HOH B 1 601 1 HOH HOH . G 4 HOH B 2 602 3 HOH HOH . G 4 HOH B 3 603 5 HOH HOH . G 4 HOH B 4 604 6 HOH HOH . G 4 HOH B 5 605 12 HOH HOH . G 4 HOH B 6 606 13 HOH HOH . G 4 HOH B 7 607 17 HOH HOH . G 4 HOH B 8 608 19 HOH HOH . G 4 HOH B 9 609 24 HOH HOH . G 4 HOH B 10 610 25 HOH HOH . G 4 HOH B 11 611 26 HOH HOH . G 4 HOH B 12 612 29 HOH HOH . G 4 HOH B 13 613 30 HOH HOH . G 4 HOH B 14 614 32 HOH HOH . G 4 HOH B 15 615 33 HOH HOH . G 4 HOH B 16 616 38 HOH HOH . G 4 HOH B 17 617 41 HOH HOH . G 4 HOH B 18 618 42 HOH HOH . G 4 HOH B 19 619 43 HOH HOH . G 4 HOH B 20 620 44 HOH HOH . G 4 HOH B 21 621 47 HOH HOH . G 4 HOH B 22 622 49 HOH HOH . G 4 HOH B 23 623 51 HOH HOH . G 4 HOH B 24 624 53 HOH HOH . G 4 HOH B 25 625 54 HOH HOH . G 4 HOH B 26 626 55 HOH HOH . G 4 HOH B 27 627 56 HOH HOH . G 4 HOH B 28 628 57 HOH HOH . G 4 HOH B 29 629 58 HOH HOH . G 4 HOH B 30 630 59 HOH HOH . G 4 HOH B 31 631 60 HOH HOH . G 4 HOH B 32 632 63 HOH HOH . G 4 HOH B 33 633 66 HOH HOH . G 4 HOH B 34 634 68 HOH HOH . G 4 HOH B 35 635 71 HOH HOH . G 4 HOH B 36 636 73 HOH HOH . G 4 HOH B 37 637 75 HOH HOH . G 4 HOH B 38 638 76 HOH HOH . G 4 HOH B 39 639 78 HOH HOH . G 4 HOH B 40 640 81 HOH HOH . G 4 HOH B 41 641 83 HOH HOH . G 4 HOH B 42 642 89 HOH HOH . G 4 HOH B 43 643 94 HOH HOH . G 4 HOH B 44 644 98 HOH HOH . G 4 HOH B 45 645 99 HOH HOH . G 4 HOH B 46 646 102 HOH HOH . G 4 HOH B 47 647 103 HOH HOH . G 4 HOH B 48 648 104 HOH HOH . G 4 HOH B 49 649 108 HOH HOH . G 4 HOH B 50 650 110 HOH HOH . G 4 HOH B 51 651 115 HOH HOH . G 4 HOH B 52 652 121 HOH HOH . G 4 HOH B 53 653 122 HOH HOH . G 4 HOH B 54 654 123 HOH HOH . G 4 HOH B 55 655 127 HOH HOH . G 4 HOH B 56 656 128 HOH HOH . G 4 HOH B 57 657 129 HOH HOH . G 4 HOH B 58 658 130 HOH HOH . G 4 HOH B 59 659 135 HOH HOH . G 4 HOH B 60 660 136 HOH HOH . G 4 HOH B 61 661 138 HOH HOH . G 4 HOH B 62 662 139 HOH HOH . G 4 HOH B 63 663 141 HOH HOH . G 4 HOH B 64 664 143 HOH HOH . G 4 HOH B 65 665 144 HOH HOH . G 4 HOH B 66 666 145 HOH HOH . G 4 HOH B 67 667 146 HOH HOH . G 4 HOH B 68 668 147 HOH HOH . G 4 HOH B 69 669 148 HOH HOH . G 4 HOH B 70 670 149 HOH HOH . G 4 HOH B 71 671 155 HOH HOH . G 4 HOH B 72 672 159 HOH HOH . G 4 HOH B 73 673 160 HOH HOH . G 4 HOH B 74 674 162 HOH HOH . G 4 HOH B 75 675 163 HOH HOH . G 4 HOH B 76 676 165 HOH HOH . G 4 HOH B 77 677 167 HOH HOH . G 4 HOH B 78 678 172 HOH HOH . G 4 HOH B 79 679 179 HOH HOH . G 4 HOH B 80 680 180 HOH HOH . G 4 HOH B 81 681 181 HOH HOH . G 4 HOH B 82 682 184 HOH HOH . G 4 HOH B 83 683 188 HOH HOH . G 4 HOH B 84 684 189 HOH HOH . G 4 HOH B 85 685 190 HOH HOH . G 4 HOH B 86 686 199 HOH HOH . G 4 HOH B 87 687 202 HOH HOH . G 4 HOH B 88 688 205 HOH HOH . G 4 HOH B 89 689 208 HOH HOH . G 4 HOH B 90 690 212 HOH HOH . G 4 HOH B 91 691 214 HOH HOH . G 4 HOH B 92 692 219 HOH HOH . G 4 HOH B 93 693 221 HOH HOH . G 4 HOH B 94 694 222 HOH HOH . G 4 HOH B 95 695 223 HOH HOH . G 4 HOH B 96 696 224 HOH HOH . G 4 HOH B 97 697 226 HOH HOH . G 4 HOH B 98 698 233 HOH HOH . G 4 HOH B 99 699 234 HOH HOH . G 4 HOH B 100 700 235 HOH HOH . G 4 HOH B 101 701 237 HOH HOH . G 4 HOH B 102 702 243 HOH HOH . G 4 HOH B 103 703 244 HOH HOH . G 4 HOH B 104 704 245 HOH HOH . G 4 HOH B 105 705 247 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.413 _atom_site.Cartn_y -5.698 _atom_site.Cartn_z 7.258 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #