data_3VKX # _model_server_result.job_id 1xaXHVtd0BGcVOt8KksO3g _model_server_result.datetime_utc '2024-11-22 14:47:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3VKX # _exptl.entry_id 3VKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.973 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3'TRIIODOTHYRONINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VKX _cell.length_a 143.107 _cell.length_b 143.107 _cell.length_c 143.107 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 71.5535 71.5535 3 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -71.5535 71.5535 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 I3 N O4' _chem_comp.formula_weight 650.973 _chem_comp.id T3 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3'TRIIODOTHYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'T3;THYROID HORMONE;LIOTHYRONINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 T3 doub 294 n y C1 C11 T3 sing 295 n y C1 C13 T3 sing 296 n n C2 C4 T3 doub 297 n y C2 C12 T3 sing 298 n y C2 O2 T3 sing 299 n n C3 C5 T3 sing 300 n y C3 HC3 T3 sing 301 n n C4 C6 T3 sing 302 n y C4 HC4 T3 sing 303 n n C5 C7 T3 doub 304 n y C5 I1 T3 sing 305 n n C6 C8 T3 doub 306 n y C6 I2 T3 sing 307 n n C7 C9 T3 sing 308 n y C7 O2 T3 sing 309 n n C8 C10 T3 sing 310 n y C8 O1 T3 sing 311 n n C9 C11 T3 doub 312 n y C9 I3 T3 sing 313 n n C10 C12 T3 doub 314 n y C10 HC10 T3 sing 315 n n C11 HC11 T3 sing 316 n n C12 HC12 T3 sing 317 n n C13 CA T3 sing 318 n n C13 H131 T3 sing 319 n n C13 H132 T3 sing 320 n n CA C T3 sing 321 n n CA N T3 sing 322 n n CA HA T3 sing 323 n n C OXT T3 sing 324 n n C O T3 doub 325 n n N H2 T3 sing 326 n n N H T3 sing 327 n n O1 HO1 T3 sing 328 n n OXT HXT T3 sing 329 n n # _atom_sites.entry_id 3VKX _atom_sites.fract_transf_matrix[1][1] 0.006988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T3 A 1 301 301 T3 T3 . C 3 SO4 A 1 262 262 SO4 SO4 . D 3 SO4 A 1 263 263 SO4 SO4 . E 3 SO4 A 1 264 264 SO4 SO4 . F 3 SO4 A 1 265 265 SO4 SO4 . G 3 SO4 A 1 266 266 SO4 SO4 . H 3 SO4 A 1 267 267 SO4 SO4 . I 4 CL A 1 268 268 CL CL . J 5 HOH A 1 269 269 HOH HOH . J 5 HOH A 2 270 270 HOH HOH . J 5 HOH A 3 271 271 HOH HOH . J 5 HOH A 4 272 272 HOH HOH . J 5 HOH A 5 273 273 HOH HOH . J 5 HOH A 6 274 274 HOH HOH . J 5 HOH A 7 275 275 HOH HOH . J 5 HOH A 8 276 276 HOH HOH . J 5 HOH A 9 277 277 HOH HOH . J 5 HOH A 10 278 278 HOH HOH . J 5 HOH A 11 279 279 HOH HOH . J 5 HOH A 12 280 280 HOH HOH . J 5 HOH A 13 281 281 HOH HOH . J 5 HOH A 14 282 282 HOH HOH . J 5 HOH A 15 283 283 HOH HOH . J 5 HOH A 16 284 284 HOH HOH . J 5 HOH A 17 285 285 HOH HOH . J 5 HOH A 18 286 286 HOH HOH . J 5 HOH A 19 287 287 HOH HOH . J 5 HOH A 20 288 288 HOH HOH . J 5 HOH A 21 289 289 HOH HOH . J 5 HOH A 22 290 290 HOH HOH . J 5 HOH A 23 291 291 HOH HOH . J 5 HOH A 24 292 292 HOH HOH . J 5 HOH A 25 293 293 HOH HOH . J 5 HOH A 26 294 294 HOH HOH . J 5 HOH A 27 295 295 HOH HOH . J 5 HOH A 28 296 296 HOH HOH . J 5 HOH A 29 297 297 HOH HOH . J 5 HOH A 30 298 298 HOH HOH . J 5 HOH A 31 299 299 HOH HOH . J 5 HOH A 32 300 300 HOH HOH . J 5 HOH A 33 302 302 HOH HOH . J 5 HOH A 34 303 303 HOH HOH . J 5 HOH A 35 304 304 HOH HOH . J 5 HOH A 36 305 305 HOH HOH . J 5 HOH A 37 306 306 HOH HOH . J 5 HOH A 38 307 307 HOH HOH . J 5 HOH A 39 308 308 HOH HOH . J 5 HOH A 40 309 309 HOH HOH . J 5 HOH A 41 310 310 HOH HOH . J 5 HOH A 42 311 311 HOH HOH . J 5 HOH A 43 312 312 HOH HOH . J 5 HOH A 44 313 313 HOH HOH . J 5 HOH A 45 314 314 HOH HOH . J 5 HOH A 46 315 315 HOH HOH . J 5 HOH A 47 316 316 HOH HOH . J 5 HOH A 48 317 317 HOH HOH . J 5 HOH A 49 318 318 HOH HOH . J 5 HOH A 50 319 319 HOH HOH . J 5 HOH A 51 320 320 HOH HOH . J 5 HOH A 52 321 321 HOH HOH . J 5 HOH A 53 322 322 HOH HOH . J 5 HOH A 54 323 323 HOH HOH . J 5 HOH A 55 324 324 HOH HOH . J 5 HOH A 56 325 325 HOH HOH . J 5 HOH A 57 326 326 HOH HOH . J 5 HOH A 58 327 327 HOH HOH . J 5 HOH A 59 328 328 HOH HOH . J 5 HOH A 60 329 329 HOH HOH . J 5 HOH A 61 330 330 HOH HOH . J 5 HOH A 62 331 331 HOH HOH . J 5 HOH A 63 332 332 HOH HOH . J 5 HOH A 64 333 333 HOH HOH . J 5 HOH A 65 334 334 HOH HOH . J 5 HOH A 66 335 335 HOH HOH . J 5 HOH A 67 336 336 HOH HOH . J 5 HOH A 68 337 337 HOH HOH . J 5 HOH A 69 338 338 HOH HOH . J 5 HOH A 70 339 339 HOH HOH . J 5 HOH A 71 340 340 HOH HOH . J 5 HOH A 72 341 341 HOH HOH . J 5 HOH A 73 342 342 HOH HOH . J 5 HOH A 74 343 343 HOH HOH . J 5 HOH A 75 344 344 HOH HOH . J 5 HOH A 76 345 345 HOH HOH . J 5 HOH A 77 346 346 HOH HOH . J 5 HOH A 78 347 347 HOH HOH . J 5 HOH A 79 348 348 HOH HOH . J 5 HOH A 80 349 349 HOH HOH . J 5 HOH A 81 350 350 HOH HOH . J 5 HOH A 82 351 351 HOH HOH . J 5 HOH A 83 352 352 HOH HOH . J 5 HOH A 84 353 353 HOH HOH . J 5 HOH A 85 354 354 HOH HOH . J 5 HOH A 86 355 355 HOH HOH . J 5 HOH A 87 356 356 HOH HOH . J 5 HOH A 88 357 357 HOH HOH . J 5 HOH A 89 358 358 HOH HOH . J 5 HOH A 90 359 359 HOH HOH . J 5 HOH A 91 360 360 HOH HOH . J 5 HOH A 92 361 361 HOH HOH . J 5 HOH A 93 362 362 HOH HOH . J 5 HOH A 94 363 363 HOH HOH . J 5 HOH A 95 364 364 HOH HOH . J 5 HOH A 96 365 365 HOH HOH . J 5 HOH A 97 366 366 HOH HOH . J 5 HOH A 98 367 367 HOH HOH . J 5 HOH A 99 368 368 HOH HOH . J 5 HOH A 100 369 369 HOH HOH . J 5 HOH A 101 370 370 HOH HOH . J 5 HOH A 102 371 371 HOH HOH . J 5 HOH A 103 372 372 HOH HOH . J 5 HOH A 104 373 373 HOH HOH . J 5 HOH A 105 374 374 HOH HOH . J 5 HOH A 106 375 375 HOH HOH . J 5 HOH A 107 376 376 HOH HOH . J 5 HOH A 108 377 377 HOH HOH . J 5 HOH A 109 378 378 HOH HOH . J 5 HOH A 110 379 379 HOH HOH . J 5 HOH A 111 380 380 HOH HOH . J 5 HOH A 112 381 381 HOH HOH . J 5 HOH A 113 382 382 HOH HOH . J 5 HOH A 114 383 383 HOH HOH . J 5 HOH A 115 384 384 HOH HOH . J 5 HOH A 116 385 385 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T3 . . . B 2 -20.035 2.588 39.022 1 51.54 ? C1 T3 301 A 1 HETATM 2 C C2 T3 . . . B 2 -16.949 4.32 35.538 1 44.2 ? C2 T3 301 A 1 HETATM 3 C C3 T3 . . . B 2 -20.58 3.393 38.017 1 50.12 ? C3 T3 301 A 1 HETATM 4 C C4 T3 . . . B 2 -17.179 2.967 35.244 1 43.83 ? C4 T3 301 A 1 HETATM 5 C C5 T3 . . . B 2 -19.785 4.215 37.213 1 48.38 ? C5 T3 301 A 1 HETATM 6 C C6 T3 . . . B 2 -16.693 2.42 34.064 1 46.3 ? C6 T3 301 A 1 HETATM 7 C C7 T3 . . . B 2 -18.317 4.159 37.425 1 47.48 ? C7 T3 301 A 1 HETATM 8 C C8 T3 . . . B 2 -15.942 3.289 33.136 1 45.58 ? C8 T3 301 A 1 HETATM 9 C C9 T3 . . . B 2 -17.794 3.262 38.483 1 49.08 ? C9 T3 301 A 1 HETATM 10 C C10 T3 . . . B 2 -15.74 4.621 33.46 1 46.64 ? C10 T3 301 A 1 HETATM 11 C C11 T3 . . . B 2 -18.66 2.501 39.245 1 48.72 ? C11 T3 301 A 1 HETATM 12 C C12 T3 . . . B 2 -16.242 5.133 34.661 1 44.9 ? C12 T3 301 A 1 HETATM 13 C C13 T3 . . . B 2 -20.935 1.691 39.823 1 52.46 ? C13 T3 301 A 1 HETATM 14 C CA T3 . . . B 2 -21.935 2.364 40.736 1 56.34 ? CA T3 301 A 1 HETATM 15 C C T3 . . . B 2 -22.747 1.238 41.338 1 61.42 ? C T3 301 A 1 HETATM 16 I I1 T3 . . . B 2 -20.727 5.397 35.73 1 60.68 ? I1 T3 301 A 1 HETATM 17 I I2 T3 . . . B 2 -17.008 0.41 33.554 1 51.68 ? I2 T3 301 A 1 HETATM 18 I I3 T3 . . . B 2 -15.747 3.135 38.818 1 51.86 ? I3 T3 301 A 1 HETATM 19 N N T3 . . . B 2 -21.207 3.117 41.739 1 51.45 ? N T3 301 A 1 HETATM 20 O O1 T3 . . . B 2 -15.467 2.769 31.984 1 48.62 ? O1 T3 301 A 1 HETATM 21 O O2 T3 . . . B 2 -17.419 4.883 36.687 1 43.72 ? O2 T3 301 A 1 HETATM 22 O OXT T3 . . . B 2 -23.003 0.244 40.606 1 61.85 ? OXT T3 301 A 1 HETATM 23 O O T3 . . . B 2 -23.109 1.313 42.539 1 68.64 ? O T3 301 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #