data_3VLC # _model_server_result.job_id WxeeyClcFL9DKIxI0VWh5A _model_server_result.datetime_utc '2024-12-26 22:48:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vlc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3VLC # _exptl.entry_id 3VLC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VLC _cell.length_a 132.634 _cell.length_b 132.634 _cell.length_c 185.153 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 66.317 38.288138 61.717667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3VLC _atom_sites.fract_transf_matrix[1][1] 0.00754 _atom_sites.fract_transf_matrix[1][2] 0.004353 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id ADP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id ADP _pdbx_nonpoly_scheme.auth_mon_id ADP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 16.258 37.186 38.179 1 223.3 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . C 3 14.998 36.509 37.904 1 222.91 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . C 3 17.259 37.042 36.929 1 222.95 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . C 3 16.947 36.556 39.495 1 223.31 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . C 3 14.97 38.892 39.663 1 226.61 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . C 3 13.64 38.351 39.284 1 225.75 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . C 3 15.531 38.146 40.985 1 226.55 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . C 3 16.006 38.727 38.45 1 224.75 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . C 3 14.857 40.457 39.911 1 228.33 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . C 3 13.939 40.716 40.954 1 231.43 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . C 3 13.961 42.209 41.124 1 233.1 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . C 3 13.678 42.853 39.882 1 234.58 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . C 3 12.964 42.66 42.182 1 233.57 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . C 3 13.659 43.263 43.264 1 232.91 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . C 3 12.052 43.647 41.468 1 234.64 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . C 3 12.142 44.914 42.092 1 233.77 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . C 3 12.564 43.735 40.038 1 236.58 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . C 3 11.54 43.403 39.038 1 240.2 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . C 3 11.257 42.164 38.505 1 241.51 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . C 3 10.289 42.262 37.626 1 243.25 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . C 3 9.886 43.567 37.535 1 243.31 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . C 3 8.903 44.298 36.77 1 243.71 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . C 3 8.079 43.656 35.848 1 243.57 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . C 3 8.797 45.637 36.967 1 243.72 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . C 3 9.578 46.287 37.848 1 243.48 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . C 3 10.502 45.65 38.572 1 242.94 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . C 3 10.689 44.311 38.452 1 242.31 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #