data_3VLN # _model_server_result.job_id 8ud9KllomHlcFrKGQMWfww _model_server_result.datetime_utc '2024-11-28 14:12:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vln # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":906}' # _entry.id 3VLN # _exptl.entry_id 3VLN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3VLN _cell.length_a 56.918 _cell.length_b 56.918 _cell.length_c 140.511 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VLN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.837 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 164 n n C1 C2 GOL sing 165 n n C1 H11 GOL sing 166 n n C1 H12 GOL sing 167 n n O1 HO1 GOL sing 168 n n C2 O2 GOL sing 169 n n C2 C3 GOL sing 170 n n C2 H2 GOL sing 171 n n O2 HO2 GOL sing 172 n n C3 O3 GOL sing 173 n n C3 H31 GOL sing 174 n n C3 H32 GOL sing 175 n n O3 HO3 GOL sing 176 n n # _atom_sites.entry_id 3VLN _atom_sites.fract_transf_matrix[1][1] 0.017569 _atom_sites.fract_transf_matrix[1][2] 0.010144 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 901 SO4 SO4 . C 2 SO4 A 1 902 902 SO4 SO4 . D 2 SO4 A 1 903 903 SO4 SO4 . E 3 ASC A 1 904 1 ASC ASC . F 4 GOL A 1 905 1 GOL GOL . G 4 GOL A 1 906 2 GOL GOL . H 5 EDO A 1 907 3 EDO EDO . I 6 ACT A 1 908 1 ACT ACT . J 7 HOH A 1 1001 1 HOH HOH . J 7 HOH A 2 1002 2 HOH HOH . J 7 HOH A 3 1003 3 HOH HOH . J 7 HOH A 4 1004 4 HOH HOH . J 7 HOH A 5 1005 5 HOH HOH . J 7 HOH A 6 1006 6 HOH HOH . J 7 HOH A 7 1007 7 HOH HOH . J 7 HOH A 8 1008 8 HOH HOH . J 7 HOH A 9 1009 9 HOH HOH . J 7 HOH A 10 1010 10 HOH HOH . J 7 HOH A 11 1011 11 HOH HOH . J 7 HOH A 12 1012 12 HOH HOH . J 7 HOH A 13 1013 13 HOH HOH . J 7 HOH A 14 1014 14 HOH HOH . J 7 HOH A 15 1015 15 HOH HOH . J 7 HOH A 16 1016 16 HOH HOH . J 7 HOH A 17 1017 17 HOH HOH . J 7 HOH A 18 1018 18 HOH HOH . J 7 HOH A 19 1019 19 HOH HOH . J 7 HOH A 20 1020 20 HOH HOH . J 7 HOH A 21 1021 21 HOH HOH . J 7 HOH A 22 1022 22 HOH HOH . J 7 HOH A 23 1023 23 HOH HOH . J 7 HOH A 24 1024 24 HOH HOH . J 7 HOH A 25 1025 25 HOH HOH . J 7 HOH A 26 1026 26 HOH HOH . J 7 HOH A 27 1027 27 HOH HOH . J 7 HOH A 28 1028 28 HOH HOH . J 7 HOH A 29 1029 29 HOH HOH . J 7 HOH A 30 1030 30 HOH HOH . J 7 HOH A 31 1031 31 HOH HOH . J 7 HOH A 32 1032 32 HOH HOH . J 7 HOH A 33 1033 33 HOH HOH . J 7 HOH A 34 1034 34 HOH HOH . J 7 HOH A 35 1035 35 HOH HOH . J 7 HOH A 36 1036 36 HOH HOH . J 7 HOH A 37 1037 37 HOH HOH . J 7 HOH A 38 1038 38 HOH HOH . J 7 HOH A 39 1039 39 HOH HOH . J 7 HOH A 40 1040 40 HOH HOH . J 7 HOH A 41 1041 41 HOH HOH . J 7 HOH A 42 1042 42 HOH HOH . J 7 HOH A 43 1043 43 HOH HOH . J 7 HOH A 44 1044 44 HOH HOH . J 7 HOH A 45 1045 45 HOH HOH . J 7 HOH A 46 1046 46 HOH HOH . J 7 HOH A 47 1047 47 HOH HOH . J 7 HOH A 48 1048 48 HOH HOH . J 7 HOH A 49 1049 49 HOH HOH . J 7 HOH A 50 1050 50 HOH HOH . J 7 HOH A 51 1051 51 HOH HOH . J 7 HOH A 52 1052 52 HOH HOH . J 7 HOH A 53 1053 53 HOH HOH . J 7 HOH A 54 1054 54 HOH HOH . J 7 HOH A 55 1055 55 HOH HOH . J 7 HOH A 56 1056 56 HOH HOH . J 7 HOH A 57 1057 57 HOH HOH . J 7 HOH A 58 1058 58 HOH HOH . J 7 HOH A 59 1059 59 HOH HOH . J 7 HOH A 60 1060 60 HOH HOH . J 7 HOH A 61 1061 61 HOH HOH . J 7 HOH A 62 1062 62 HOH HOH . J 7 HOH A 63 1063 63 HOH HOH . J 7 HOH A 64 1064 64 HOH HOH . J 7 HOH A 65 1065 65 HOH HOH . J 7 HOH A 66 1066 66 HOH HOH . J 7 HOH A 67 1067 67 HOH HOH . J 7 HOH A 68 1068 68 HOH HOH . J 7 HOH A 69 1069 69 HOH HOH . J 7 HOH A 70 1070 70 HOH HOH . J 7 HOH A 71 1071 71 HOH HOH . J 7 HOH A 72 1072 72 HOH HOH . J 7 HOH A 73 1073 74 HOH HOH . J 7 HOH A 74 1074 75 HOH HOH . J 7 HOH A 75 1075 76 HOH HOH . J 7 HOH A 76 1076 77 HOH HOH . J 7 HOH A 77 1077 78 HOH HOH . J 7 HOH A 78 1078 79 HOH HOH . J 7 HOH A 79 1079 80 HOH HOH . J 7 HOH A 80 1080 81 HOH HOH . J 7 HOH A 81 1081 82 HOH HOH . J 7 HOH A 82 1082 83 HOH HOH . J 7 HOH A 83 1083 84 HOH HOH . J 7 HOH A 84 1084 85 HOH HOH . J 7 HOH A 85 1085 86 HOH HOH . J 7 HOH A 86 1086 87 HOH HOH . J 7 HOH A 87 1087 88 HOH HOH . J 7 HOH A 88 1088 89 HOH HOH . J 7 HOH A 89 1089 90 HOH HOH . J 7 HOH A 90 1090 91 HOH HOH . J 7 HOH A 91 1091 92 HOH HOH . J 7 HOH A 92 1092 93 HOH HOH . J 7 HOH A 93 1093 94 HOH HOH . J 7 HOH A 94 1094 95 HOH HOH . J 7 HOH A 95 1095 96 HOH HOH . J 7 HOH A 96 1096 97 HOH HOH . J 7 HOH A 97 1097 98 HOH HOH . J 7 HOH A 98 1098 99 HOH HOH . J 7 HOH A 99 1099 100 HOH HOH . J 7 HOH A 100 1100 101 HOH HOH . J 7 HOH A 101 1101 102 HOH HOH . J 7 HOH A 102 1102 103 HOH HOH . J 7 HOH A 103 1103 104 HOH HOH . J 7 HOH A 104 1104 105 HOH HOH . J 7 HOH A 105 1105 106 HOH HOH . J 7 HOH A 106 1106 107 HOH HOH . J 7 HOH A 107 1107 108 HOH HOH . J 7 HOH A 108 1108 109 HOH HOH . J 7 HOH A 109 1109 110 HOH HOH . J 7 HOH A 110 1110 111 HOH HOH . J 7 HOH A 111 1111 112 HOH HOH . J 7 HOH A 112 1112 113 HOH HOH . J 7 HOH A 113 1113 114 HOH HOH . J 7 HOH A 114 1114 115 HOH HOH . J 7 HOH A 115 1115 116 HOH HOH . J 7 HOH A 116 1116 117 HOH HOH . J 7 HOH A 117 1117 118 HOH HOH . J 7 HOH A 118 1118 119 HOH HOH . J 7 HOH A 119 1119 120 HOH HOH . J 7 HOH A 120 1120 121 HOH HOH . J 7 HOH A 121 1121 122 HOH HOH . J 7 HOH A 122 1122 123 HOH HOH . J 7 HOH A 123 1123 124 HOH HOH . J 7 HOH A 124 1124 125 HOH HOH . J 7 HOH A 125 1125 126 HOH HOH . J 7 HOH A 126 1126 127 HOH HOH . J 7 HOH A 127 1127 128 HOH HOH . J 7 HOH A 128 1128 129 HOH HOH . J 7 HOH A 129 1129 130 HOH HOH . J 7 HOH A 130 1130 131 HOH HOH . J 7 HOH A 131 1131 132 HOH HOH . J 7 HOH A 132 1132 133 HOH HOH . J 7 HOH A 133 1133 135 HOH HOH . J 7 HOH A 134 1134 136 HOH HOH . J 7 HOH A 135 1135 137 HOH HOH . J 7 HOH A 136 1136 138 HOH HOH . J 7 HOH A 137 1137 139 HOH HOH . J 7 HOH A 138 1138 140 HOH HOH . J 7 HOH A 139 1139 141 HOH HOH . J 7 HOH A 140 1140 142 HOH HOH . J 7 HOH A 141 1141 143 HOH HOH . J 7 HOH A 142 1142 144 HOH HOH . J 7 HOH A 143 1143 145 HOH HOH . J 7 HOH A 144 1144 146 HOH HOH . J 7 HOH A 145 1145 147 HOH HOH . J 7 HOH A 146 1146 148 HOH HOH . J 7 HOH A 147 1147 149 HOH HOH . J 7 HOH A 148 1148 150 HOH HOH . J 7 HOH A 149 1149 151 HOH HOH . J 7 HOH A 150 1150 152 HOH HOH . J 7 HOH A 151 1151 153 HOH HOH . J 7 HOH A 152 1152 154 HOH HOH . J 7 HOH A 153 1153 155 HOH HOH . J 7 HOH A 154 1154 156 HOH HOH . J 7 HOH A 155 1155 157 HOH HOH . J 7 HOH A 156 1156 158 HOH HOH . J 7 HOH A 157 1157 159 HOH HOH . J 7 HOH A 158 1158 160 HOH HOH . J 7 HOH A 159 1159 161 HOH HOH . J 7 HOH A 160 1160 162 HOH HOH . J 7 HOH A 161 1161 163 HOH HOH . J 7 HOH A 162 1162 164 HOH HOH . J 7 HOH A 163 1163 165 HOH HOH . J 7 HOH A 164 1164 166 HOH HOH . J 7 HOH A 165 1165 167 HOH HOH . J 7 HOH A 166 1166 168 HOH HOH . J 7 HOH A 167 1167 169 HOH HOH . J 7 HOH A 168 1168 170 HOH HOH . J 7 HOH A 169 1169 171 HOH HOH . J 7 HOH A 170 1170 172 HOH HOH . J 7 HOH A 171 1171 173 HOH HOH . J 7 HOH A 172 1172 174 HOH HOH . J 7 HOH A 173 1173 176 HOH HOH . J 7 HOH A 174 1174 178 HOH HOH . J 7 HOH A 175 1175 179 HOH HOH . J 7 HOH A 176 1176 180 HOH HOH . J 7 HOH A 177 1177 181 HOH HOH . J 7 HOH A 178 1178 182 HOH HOH . J 7 HOH A 179 1179 183 HOH HOH . J 7 HOH A 180 1180 184 HOH HOH . J 7 HOH A 181 1181 185 HOH HOH . J 7 HOH A 182 1182 186 HOH HOH . J 7 HOH A 183 1183 187 HOH HOH . J 7 HOH A 184 1184 188 HOH HOH . J 7 HOH A 185 1185 189 HOH HOH . J 7 HOH A 186 1186 190 HOH HOH . J 7 HOH A 187 1187 191 HOH HOH . J 7 HOH A 188 1188 192 HOH HOH . J 7 HOH A 189 1189 193 HOH HOH . J 7 HOH A 190 1190 194 HOH HOH . J 7 HOH A 191 1191 195 HOH HOH . J 7 HOH A 192 1192 196 HOH HOH . J 7 HOH A 193 1193 197 HOH HOH . J 7 HOH A 194 1194 198 HOH HOH . J 7 HOH A 195 1195 200 HOH HOH . J 7 HOH A 196 1196 201 HOH HOH . J 7 HOH A 197 1197 202 HOH HOH . J 7 HOH A 198 1198 203 HOH HOH . J 7 HOH A 199 1199 205 HOH HOH . J 7 HOH A 200 1200 206 HOH HOH . J 7 HOH A 201 1201 207 HOH HOH . J 7 HOH A 202 1202 208 HOH HOH . J 7 HOH A 203 1203 209 HOH HOH . J 7 HOH A 204 1204 210 HOH HOH . J 7 HOH A 205 1205 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 16.524 -18.441 36.997 0.66 45.59 ? C1 GOL 906 A 1 HETATM 2 O O1 GOL . . . G 4 15.161 -18.12 37.142 0.66 49.45 ? O1 GOL 906 A 1 HETATM 3 C C2 GOL . . . G 4 16.87 -19.576 37.938 0.66 45.49 ? C2 GOL 906 A 1 HETATM 4 O O2 GOL . . . G 4 18.25 -19.841 37.941 0.66 44.6 ? O2 GOL 906 A 1 HETATM 5 C C3 GOL . . . G 4 16.145 -20.832 37.491 0.66 44.1 ? C3 GOL 906 A 1 HETATM 6 O O3 GOL . . . G 4 17.072 -21.888 37.377 0.66 42.66 ? O3 GOL 906 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #