data_3VM6
#
_model_server_result.job_id            hQpYX0RlldTkW8aGtS76Mw 
_model_server_result.datetime_utc      '2024-10-19 16:40:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vm6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":402}' 
#
_entry.id    3VM6 
#
_exptl.entry_id    3VM6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VM6 
_cell.length_a            146.537 
_cell.length_b            146.537 
_cell.length_c            99.649 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VM6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 M N N 
? 3 N N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 320 A ASP 304 1_555 I MG MG . A MG 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
metalc ? metalc2 I MG MG . A MG 323 1_555 B OD2 ASP 320 B ASP 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc3 I MG MG . A MG 323 1_555 C OD2 ASP 320 C ASP 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc4 I MG MG . A MG 323 1_555 C OD1 ASP 320 C ASP 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc5 C O LYS 208 C LYS 192 1_555 V MG MG . C MG 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 237 n n 
C1 C2 PEG sing 238 n n 
C1 H11 PEG sing 239 n n 
C1 H12 PEG sing 240 n n 
O1 HO1 PEG sing 241 n n 
C2 O2 PEG sing 242 n n 
C2 H21 PEG sing 243 n n 
C2 H22 PEG sing 244 n n 
O2 C3 PEG sing 245 n n 
C3 C4 PEG sing 246 n n 
C3 H31 PEG sing 247 n n 
C3 H32 PEG sing 248 n n 
C4 O4 PEG sing 249 n n 
C4 H41 PEG sing 250 n n 
C4 H42 PEG sing 251 n n 
O4 HO4 PEG sing 252 n n 
#
_atom_sites.entry_id                     3VM6 
_atom_sites.fract_transf_matrix[1][1]    0.006824 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006824 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010035 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 RI2 A 1 401 401 RI2 RP2 . 
E 3 PEG A 1 402 402 PEG PEG . 
F 3 PEG A 1 403 403 PEG PEG . 
G 3 PEG A 1 404 404 PEG PEG . 
H 4 CL A 1 411 411 CL CL . 
I 5 MG A 1 323 411 MG MG . 
J 2 RI2 B 1 401 401 RI2 RP2 . 
K 3 PEG B 1 402 402 PEG PEG . 
L 6 PG4 B 1 403 403 PG4 PG4 . 
M 3 PEG B 1 404 404 PEG PEG . 
N 3 PEG B 1 405 405 PEG PEG . 
O 4 CL B 1 411 411 CL CL . 
P 2 RI2 C 1 401 401 RI2 RP2 . 
Q 3 PEG C 1 402 402 PEG PEG . 
R 3 PEG C 1 403 403 PEG PEG . 
S 3 PEG C 1 404 404 PEG PEG . 
T 3 PEG C 1 405 405 PEG PEG . 
U 4 CL C 1 412 412 CL CL . 
V 5 MG C 1 413 413 MG MG . 
W 7 HOH A 1 501 501 HOH HOH . 
W 7 HOH A 2 502 502 HOH HOH . 
W 7 HOH A 3 503 503 HOH HOH . 
W 7 HOH A 4 504 4 HOH HOH . 
W 7 HOH A 5 505 8 HOH HOH . 
W 7 HOH A 6 506 14 HOH HOH . 
W 7 HOH A 7 507 507 HOH HOH . 
W 7 HOH A 8 508 508 HOH HOH . 
W 7 HOH A 9 509 17 HOH HOH . 
W 7 HOH A 10 510 35 HOH HOH . 
W 7 HOH A 11 511 39 HOH HOH . 
W 7 HOH A 12 512 42 HOH HOH . 
W 7 HOH A 13 513 43 HOH HOH . 
W 7 HOH A 14 514 68 HOH HOH . 
W 7 HOH A 15 515 72 HOH HOH . 
W 7 HOH A 16 516 74 HOH HOH . 
W 7 HOH A 17 517 81 HOH HOH . 
W 7 HOH A 18 518 83 HOH HOH . 
W 7 HOH A 19 519 64 HOH HOH . 
W 7 HOH A 20 520 96 HOH HOH . 
W 7 HOH A 21 521 97 HOH HOH . 
W 7 HOH A 22 601 601 HOH HOH . 
W 7 HOH A 23 604 604 HOH HOH . 
W 7 HOH A 24 609 609 HOH HOH . 
W 7 HOH A 25 615 615 HOH HOH . 
W 7 HOH A 26 616 616 HOH HOH . 
W 7 HOH A 27 621 621 HOH HOH . 
W 7 HOH A 28 628 628 HOH HOH . 
W 7 HOH A 29 637 637 HOH HOH . 
W 7 HOH A 30 645 645 HOH HOH . 
W 7 HOH A 31 649 649 HOH HOH . 
W 7 HOH A 32 663 663 HOH HOH . 
W 7 HOH A 33 667 667 HOH HOH . 
W 7 HOH A 34 668 668 HOH HOH . 
W 7 HOH A 35 669 669 HOH HOH . 
W 7 HOH A 36 670 670 HOH HOH . 
W 7 HOH A 37 682 138 HOH HOH . 
X 7 HOH B 1 501 501 HOH HOH . 
X 7 HOH B 2 502 502 HOH HOH . 
X 7 HOH B 3 506 506 HOH HOH . 
X 7 HOH B 4 601 601 HOH HOH . 
X 7 HOH B 5 608 608 HOH HOH . 
X 7 HOH B 6 609 609 HOH HOH . 
X 7 HOH B 7 612 612 HOH HOH . 
X 7 HOH B 8 613 613 HOH HOH . 
X 7 HOH B 9 615 615 HOH HOH . 
X 7 HOH B 10 616 616 HOH HOH . 
X 7 HOH B 11 621 621 HOH HOH . 
X 7 HOH B 12 636 636 HOH HOH . 
X 7 HOH B 13 638 638 HOH HOH . 
X 7 HOH B 14 644 644 HOH HOH . 
X 7 HOH B 15 653 653 HOH HOH . 
X 7 HOH B 16 654 654 HOH HOH . 
X 7 HOH B 17 655 6 HOH HOH . 
X 7 HOH B 18 656 15 HOH HOH . 
X 7 HOH B 19 657 16 HOH HOH . 
X 7 HOH B 20 658 18 HOH HOH . 
X 7 HOH B 21 659 659 HOH HOH . 
X 7 HOH B 22 660 22 HOH HOH . 
X 7 HOH B 23 661 661 HOH HOH . 
X 7 HOH B 24 662 30 HOH HOH . 
X 7 HOH B 25 663 33 HOH HOH . 
X 7 HOH B 26 664 48 HOH HOH . 
X 7 HOH B 27 665 56 HOH HOH . 
X 7 HOH B 28 666 58 HOH HOH . 
X 7 HOH B 29 667 78 HOH HOH . 
X 7 HOH B 30 668 79 HOH HOH . 
X 7 HOH B 31 669 669 HOH HOH . 
X 7 HOH B 32 670 90 HOH HOH . 
X 7 HOH B 33 671 93 HOH HOH . 
X 7 HOH B 34 672 101 HOH HOH . 
X 7 HOH B 35 673 103 HOH HOH . 
X 7 HOH B 36 674 105 HOH HOH . 
X 7 HOH B 37 675 107 HOH HOH . 
X 7 HOH B 38 676 109 HOH HOH . 
X 7 HOH B 39 677 110 HOH HOH . 
X 7 HOH B 40 678 134 HOH HOH . 
X 7 HOH B 41 679 679 HOH HOH . 
X 7 HOH B 42 680 137 HOH HOH . 
X 7 HOH B 43 681 681 HOH HOH . 
X 7 HOH B 44 683 139 HOH HOH . 
X 7 HOH B 45 684 140 HOH HOH . 
X 7 HOH B 46 685 685 HOH HOH . 
X 7 HOH B 47 686 141 HOH HOH . 
X 7 HOH B 48 690 690 HOH HOH . 
X 7 HOH B 49 691 691 HOH HOH . 
Y 7 HOH C 1 501 501 HOH HOH . 
Y 7 HOH C 2 502 502 HOH HOH . 
Y 7 HOH C 3 503 503 HOH HOH . 
Y 7 HOH C 4 506 506 HOH HOH . 
Y 7 HOH C 5 507 507 HOH HOH . 
Y 7 HOH C 6 509 509 HOH HOH . 
Y 7 HOH C 7 601 601 HOH HOH . 
Y 7 HOH C 8 606 606 HOH HOH . 
Y 7 HOH C 9 609 609 HOH HOH . 
Y 7 HOH C 10 610 610 HOH HOH . 
Y 7 HOH C 11 611 611 HOH HOH . 
Y 7 HOH C 12 612 612 HOH HOH . 
Y 7 HOH C 13 614 614 HOH HOH . 
Y 7 HOH C 14 617 617 HOH HOH . 
Y 7 HOH C 15 618 618 HOH HOH . 
Y 7 HOH C 16 634 634 HOH HOH . 
Y 7 HOH C 17 638 638 HOH HOH . 
Y 7 HOH C 18 654 654 HOH HOH . 
Y 7 HOH C 19 655 503 HOH HOH . 
Y 7 HOH C 20 656 5 HOH HOH . 
Y 7 HOH C 21 657 7 HOH HOH . 
Y 7 HOH C 22 658 9 HOH HOH . 
Y 7 HOH C 23 659 10 HOH HOH . 
Y 7 HOH C 24 660 11 HOH HOH . 
Y 7 HOH C 25 661 12 HOH HOH . 
Y 7 HOH C 26 662 19 HOH HOH . 
Y 7 HOH C 27 663 21 HOH HOH . 
Y 7 HOH C 28 664 23 HOH HOH . 
Y 7 HOH C 29 665 24 HOH HOH . 
Y 7 HOH C 30 666 25 HOH HOH . 
Y 7 HOH C 31 667 26 HOH HOH . 
Y 7 HOH C 32 668 27 HOH HOH . 
Y 7 HOH C 33 669 28 HOH HOH . 
Y 7 HOH C 34 670 32 HOH HOH . 
Y 7 HOH C 35 671 36 HOH HOH . 
Y 7 HOH C 36 672 37 HOH HOH . 
Y 7 HOH C 37 673 44 HOH HOH . 
Y 7 HOH C 38 674 45 HOH HOH . 
Y 7 HOH C 39 675 49 HOH HOH . 
Y 7 HOH C 40 676 50 HOH HOH . 
Y 7 HOH C 41 677 51 HOH HOH . 
Y 7 HOH C 42 678 52 HOH HOH . 
Y 7 HOH C 43 679 679 HOH HOH . 
Y 7 HOH C 44 680 55 HOH HOH . 
Y 7 HOH C 45 681 61 HOH HOH . 
Y 7 HOH C 46 682 62 HOH HOH . 
Y 7 HOH C 47 683 63 HOH HOH . 
Y 7 HOH C 48 684 65 HOH HOH . 
Y 7 HOH C 49 685 66 HOH HOH . 
Y 7 HOH C 50 686 69 HOH HOH . 
Y 7 HOH C 51 687 70 HOH HOH . 
Y 7 HOH C 52 688 71 HOH HOH . 
Y 7 HOH C 53 689 73 HOH HOH . 
Y 7 HOH C 54 690 76 HOH HOH . 
Y 7 HOH C 55 691 80 HOH HOH . 
Y 7 HOH C 56 692 85 HOH HOH . 
Y 7 HOH C 57 693 86 HOH HOH . 
Y 7 HOH C 58 694 91 HOH HOH . 
Y 7 HOH C 59 695 94 HOH HOH . 
Y 7 HOH C 60 696 95 HOH HOH . 
Y 7 HOH C 61 697 99 HOH HOH . 
Y 7 HOH C 62 698 102 HOH HOH . 
Y 7 HOH C 63 699 104 HOH HOH . 
Y 7 HOH C 64 700 106 HOH HOH . 
Y 7 HOH C 65 701 113 HOH HOH . 
Y 7 HOH C 66 702 114 HOH HOH . 
Y 7 HOH C 67 703 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . K 3 40.32 52.134 7.248 1 51.71 ? C1 PEG 402 B 1 
HETATM 2 O O1 PEG . . . K 3 41.587 52.697 7.597 1 50.26 ? O1 PEG 402 B 1 
HETATM 3 C C2 PEG . . . K 3 39.431 52.035 8.491 1 52.78 ? C2 PEG 402 B 1 
HETATM 4 O O2 PEG . . . K 3 38.153 51.482 8.144 1 53.83 ? O2 PEG 402 B 1 
HETATM 5 C C3 PEG . . . K 3 38.21 50.049 8.024 1 53.04 ? C3 PEG 402 B 1 
HETATM 6 C C4 PEG . . . K 3 36.916 49.492 7.427 1 52.81 ? C4 PEG 402 B 1 
HETATM 7 O O4 PEG . . . K 3 35.784 49.806 8.25 1 50.87 ? O4 PEG 402 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           7 
#