data_3VMT # _model_server_result.job_id VBji9ACB3WADSO-7zEh4Vw _model_server_result.datetime_utc '2024-11-13 03:34:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 3VMT # _exptl.entry_id 3VMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VMT _cell.length_a 66.493 _cell.length_b 67.429 _cell.length_c 152.186 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 92 A SER 98 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A OE1 GLU 96 A GLU 102 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc3 A OG1 THR 109 A THR 115 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 A O GLY 125 A GLY 131 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc5 A OE1 GLN 130 A GLN 136 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc6 C OA2 LHI . A LHI 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc7 C OA9 LHI . A LHI 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VMT _atom_sites.fract_transf_matrix[1][1] 0.015039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LHI A 1 301 1 LHI LHI . D 3 MG A 1 302 1 MG MG . E 3 MG A 1 303 1 MG MG . F 4 HOH A 1 401 1 HOH HOH . F 4 HOH A 2 402 1 HOH HOH . F 4 HOH A 3 403 2 HOH HOH . F 4 HOH A 4 404 4 HOH HOH . F 4 HOH A 5 405 5 HOH HOH . F 4 HOH A 6 406 7 HOH HOH . F 4 HOH A 7 407 9 HOH HOH . F 4 HOH A 8 408 10 HOH HOH . F 4 HOH A 9 409 11 HOH HOH . F 4 HOH A 10 410 13 HOH HOH . F 4 HOH A 11 411 14 HOH HOH . F 4 HOH A 12 412 15 HOH HOH . F 4 HOH A 13 413 17 HOH HOH . F 4 HOH A 14 414 18 HOH HOH . F 4 HOH A 15 415 19 HOH HOH . F 4 HOH A 16 416 20 HOH HOH . F 4 HOH A 17 417 21 HOH HOH . F 4 HOH A 18 418 22 HOH HOH . F 4 HOH A 19 419 23 HOH HOH . F 4 HOH A 20 420 24 HOH HOH . F 4 HOH A 21 421 25 HOH HOH . F 4 HOH A 22 422 26 HOH HOH . F 4 HOH A 23 423 27 HOH HOH . F 4 HOH A 24 424 29 HOH HOH . F 4 HOH A 25 425 30 HOH HOH . F 4 HOH A 26 426 31 HOH HOH . F 4 HOH A 27 427 32 HOH HOH . F 4 HOH A 28 428 33 HOH HOH . F 4 HOH A 29 429 34 HOH HOH . F 4 HOH A 30 430 36 HOH HOH . F 4 HOH A 31 431 37 HOH HOH . F 4 HOH A 32 432 40 HOH HOH . F 4 HOH A 33 433 41 HOH HOH . F 4 HOH A 34 434 42 HOH HOH . F 4 HOH A 35 435 44 HOH HOH . F 4 HOH A 36 436 45 HOH HOH . F 4 HOH A 37 437 46 HOH HOH . F 4 HOH A 38 438 49 HOH HOH . F 4 HOH A 39 439 50 HOH HOH . F 4 HOH A 40 440 2 HOH HOH . F 4 HOH A 41 441 3 HOH HOH . G 4 HOH B 1 301 3 HOH HOH . G 4 HOH B 2 302 6 HOH HOH . G 4 HOH B 3 303 8 HOH HOH . G 4 HOH B 4 304 12 HOH HOH . G 4 HOH B 5 305 16 HOH HOH . G 4 HOH B 6 306 28 HOH HOH . G 4 HOH B 7 307 38 HOH HOH . G 4 HOH B 8 308 39 HOH HOH . G 4 HOH B 9 309 43 HOH HOH . G 4 HOH B 10 310 51 HOH HOH . G 4 HOH B 11 311 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -22.423 _atom_site.Cartn_y 3.462 _atom_site.Cartn_z -10.889 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 90.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #