data_3VMT
#
_model_server_result.job_id            '_ftnATHPT4Xw83SdCAgK2w' 
_model_server_result.datetime_utc      '2024-11-13 03:47:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vmt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    3VMT 
#
_exptl.entry_id    3VMT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VMT 
_cell.length_a            66.493 
_cell.length_b            67.429 
_cell.length_c            152.186 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VMT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F 1 1 
B,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 92 A SER 98 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc2 A OE1 GLU 96 A GLU 102 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc3 A OG1 THR 109 A THR 115 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc4 A O GLY 125 A GLY 131 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? 
metalc ? metalc5 A OE1 GLN 130 A GLN 136 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc6 C OA2 LHI . A LHI 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc7 C OA9 LHI . A LHI 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3VMT 
_atom_sites.fract_transf_matrix[1][1]    0.015039 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01483 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006571 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LHI A 1 301 1 LHI LHI . 
D 3 MG A 1 302 1 MG MG . 
E 3 MG A 1 303 1 MG MG . 
F 4 HOH A 1 401 1 HOH HOH . 
F 4 HOH A 2 402 1 HOH HOH . 
F 4 HOH A 3 403 2 HOH HOH . 
F 4 HOH A 4 404 4 HOH HOH . 
F 4 HOH A 5 405 5 HOH HOH . 
F 4 HOH A 6 406 7 HOH HOH . 
F 4 HOH A 7 407 9 HOH HOH . 
F 4 HOH A 8 408 10 HOH HOH . 
F 4 HOH A 9 409 11 HOH HOH . 
F 4 HOH A 10 410 13 HOH HOH . 
F 4 HOH A 11 411 14 HOH HOH . 
F 4 HOH A 12 412 15 HOH HOH . 
F 4 HOH A 13 413 17 HOH HOH . 
F 4 HOH A 14 414 18 HOH HOH . 
F 4 HOH A 15 415 19 HOH HOH . 
F 4 HOH A 16 416 20 HOH HOH . 
F 4 HOH A 17 417 21 HOH HOH . 
F 4 HOH A 18 418 22 HOH HOH . 
F 4 HOH A 19 419 23 HOH HOH . 
F 4 HOH A 20 420 24 HOH HOH . 
F 4 HOH A 21 421 25 HOH HOH . 
F 4 HOH A 22 422 26 HOH HOH . 
F 4 HOH A 23 423 27 HOH HOH . 
F 4 HOH A 24 424 29 HOH HOH . 
F 4 HOH A 25 425 30 HOH HOH . 
F 4 HOH A 26 426 31 HOH HOH . 
F 4 HOH A 27 427 32 HOH HOH . 
F 4 HOH A 28 428 33 HOH HOH . 
F 4 HOH A 29 429 34 HOH HOH . 
F 4 HOH A 30 430 36 HOH HOH . 
F 4 HOH A 31 431 37 HOH HOH . 
F 4 HOH A 32 432 40 HOH HOH . 
F 4 HOH A 33 433 41 HOH HOH . 
F 4 HOH A 34 434 42 HOH HOH . 
F 4 HOH A 35 435 44 HOH HOH . 
F 4 HOH A 36 436 45 HOH HOH . 
F 4 HOH A 37 437 46 HOH HOH . 
F 4 HOH A 38 438 49 HOH HOH . 
F 4 HOH A 39 439 50 HOH HOH . 
F 4 HOH A 40 440 2 HOH HOH . 
F 4 HOH A 41 441 3 HOH HOH . 
G 4 HOH B 1 301 3 HOH HOH . 
G 4 HOH B 2 302 6 HOH HOH . 
G 4 HOH B 3 303 8 HOH HOH . 
G 4 HOH B 4 304 12 HOH HOH . 
G 4 HOH B 5 305 16 HOH HOH . 
G 4 HOH B 6 306 28 HOH HOH . 
G 4 HOH B 7 307 38 HOH HOH . 
G 4 HOH B 8 308 39 HOH HOH . 
G 4 HOH B 9 309 43 HOH HOH . 
G 4 HOH B 10 310 51 HOH HOH . 
G 4 HOH B 11 311 1 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -21.979 
_atom_site.Cartn_y               13.728 
_atom_site.Cartn_z               -18.62 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        88.8 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#