data_3VNP
#
_model_server_result.job_id            HetHiTeHzO5no3FMzAu_dw 
_model_server_result.datetime_utc      '2024-12-26 20:13:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vnp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    3VNP 
#
_exptl.entry_id    3VNP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              60.052 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3VNP 
_cell.length_a            137.978 
_cell.length_b            58.704 
_cell.length_c            94.393 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VNP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E MG MG . A MG 202 1_555 L O HOH . C HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc2 J O HOH . A HOH 320 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc3 K O HOH . B HOH 316 1_555 I MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
#
_chem_comp.formula           'C2 H4 O2' 
_chem_comp.formula_weight    60.052 
_chem_comp.id                ACY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACY doub 1 n n 
C OXT ACY sing 2 n n 
C CH3 ACY sing 3 n n 
OXT HXT ACY sing 4 n n 
CH3 H1 ACY sing 5 n n 
CH3 H2 ACY sing 6 n n 
CH3 H3 ACY sing 7 n n 
#
_atom_sites.entry_id                     3VNP 
_atom_sites.fract_transf_matrix[1][1]    0.007248 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010594 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ACY A 1 201 1 ACY ACY . 
E 3 MG A 1 202 3 MG MG . 
F 2 ACY B 1 201 2 ACY ACY . 
G 3 MG B 1 202 2 MG MG . 
H 2 ACY C 1 201 3 ACY ACY . 
I 3 MG C 1 202 1 MG MG . 
J 4 HOH A 1 301 5 HOH HOH . 
J 4 HOH A 2 302 7 HOH HOH . 
J 4 HOH A 3 303 12 HOH HOH . 
J 4 HOH A 4 304 19 HOH HOH . 
J 4 HOH A 5 305 27 HOH HOH . 
J 4 HOH A 6 306 29 HOH HOH . 
J 4 HOH A 7 307 37 HOH HOH . 
J 4 HOH A 8 308 39 HOH HOH . 
J 4 HOH A 9 309 47 HOH HOH . 
J 4 HOH A 10 310 52 HOH HOH . 
J 4 HOH A 11 311 55 HOH HOH . 
J 4 HOH A 12 312 59 HOH HOH . 
J 4 HOH A 13 313 64 HOH HOH . 
J 4 HOH A 14 314 65 HOH HOH . 
J 4 HOH A 15 315 67 HOH HOH . 
J 4 HOH A 16 316 73 HOH HOH . 
J 4 HOH A 17 317 74 HOH HOH . 
J 4 HOH A 18 318 75 HOH HOH . 
J 4 HOH A 19 319 82 HOH HOH . 
J 4 HOH A 20 320 85 HOH HOH . 
J 4 HOH A 21 321 89 HOH HOH . 
J 4 HOH A 22 322 95 HOH HOH . 
J 4 HOH A 23 323 96 HOH HOH . 
K 4 HOH B 1 301 3 HOH HOH . 
K 4 HOH B 2 302 6 HOH HOH . 
K 4 HOH B 3 303 11 HOH HOH . 
K 4 HOH B 4 304 13 HOH HOH . 
K 4 HOH B 5 305 14 HOH HOH . 
K 4 HOH B 6 306 15 HOH HOH . 
K 4 HOH B 7 307 17 HOH HOH . 
K 4 HOH B 8 308 18 HOH HOH . 
K 4 HOH B 9 309 23 HOH HOH . 
K 4 HOH B 10 310 24 HOH HOH . 
K 4 HOH B 11 311 25 HOH HOH . 
K 4 HOH B 12 312 38 HOH HOH . 
K 4 HOH B 13 313 41 HOH HOH . 
K 4 HOH B 14 314 43 HOH HOH . 
K 4 HOH B 15 315 48 HOH HOH . 
K 4 HOH B 16 316 50 HOH HOH . 
K 4 HOH B 17 317 54 HOH HOH . 
K 4 HOH B 18 318 62 HOH HOH . 
K 4 HOH B 19 319 66 HOH HOH . 
K 4 HOH B 20 320 71 HOH HOH . 
K 4 HOH B 21 321 76 HOH HOH . 
K 4 HOH B 22 322 77 HOH HOH . 
K 4 HOH B 23 323 78 HOH HOH . 
K 4 HOH B 24 324 79 HOH HOH . 
K 4 HOH B 25 325 87 HOH HOH . 
K 4 HOH B 26 326 88 HOH HOH . 
K 4 HOH B 27 327 90 HOH HOH . 
K 4 HOH B 28 328 92 HOH HOH . 
K 4 HOH B 29 329 93 HOH HOH . 
K 4 HOH B 30 330 94 HOH HOH . 
L 4 HOH C 1 301 8 HOH HOH . 
L 4 HOH C 2 302 9 HOH HOH . 
L 4 HOH C 3 303 16 HOH HOH . 
L 4 HOH C 4 304 21 HOH HOH . 
L 4 HOH C 5 305 22 HOH HOH . 
L 4 HOH C 6 306 26 HOH HOH . 
L 4 HOH C 7 307 28 HOH HOH . 
L 4 HOH C 8 308 31 HOH HOH . 
L 4 HOH C 9 309 32 HOH HOH . 
L 4 HOH C 10 310 33 HOH HOH . 
L 4 HOH C 11 311 35 HOH HOH . 
L 4 HOH C 12 312 40 HOH HOH . 
L 4 HOH C 13 313 44 HOH HOH . 
L 4 HOH C 14 314 45 HOH HOH . 
L 4 HOH C 15 315 49 HOH HOH . 
L 4 HOH C 16 316 51 HOH HOH . 
L 4 HOH C 17 317 53 HOH HOH . 
L 4 HOH C 18 318 57 HOH HOH . 
L 4 HOH C 19 319 61 HOH HOH . 
L 4 HOH C 20 320 63 HOH HOH . 
L 4 HOH C 21 321 69 HOH HOH . 
L 4 HOH C 22 322 70 HOH HOH . 
L 4 HOH C 23 323 72 HOH HOH . 
L 4 HOH C 24 324 80 HOH HOH . 
L 4 HOH C 25 325 83 HOH HOH . 
L 4 HOH C 26 326 84 HOH HOH . 
L 4 HOH C 27 327 91 HOH HOH . 
L 4 HOH C 28 328 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACY . . . D 2 49.025 20.784 27.563 1 61.61 ? C ACY 201 A 1 
HETATM 2 O O ACY . . . D 2 49.123 19.575 27.682 1 62.27 ? O ACY 201 A 1 
HETATM 3 O OXT ACY . . . D 2 49.052 21.336 26.335 1 61.43 ? OXT ACY 201 A 1 
HETATM 4 C CH3 ACY . . . D 2 48.873 21.667 28.771 1 60.72 ? CH3 ACY 201 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#