data_3VNS # _model_server_result.job_id 4uX6TRMgpnKtDn6y6mRhjw _model_server_result.datetime_utc '2024-11-05 23:03:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vns # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 3VNS # _exptl.entry_id 3VNS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-VALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VNS _cell.length_a 156.544 _cell.length_b 156.544 _cell.length_c 156.544 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VNS _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id DVA _chem_comp.mon_nstd_flag . _chem_comp.name D-VALINE _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DVA sing 122 n n N H DVA sing 123 n n N H2 DVA sing 124 n n CA CB DVA sing 125 n n CA C DVA sing 126 n n CA HA DVA sing 127 n n CB CG1 DVA sing 128 n n CB CG2 DVA sing 129 n n CB HB DVA sing 130 n n CG1 HG11 DVA sing 131 n n CG1 HG12 DVA sing 132 n n CG1 HG13 DVA sing 133 n n CG2 HG21 DVA sing 134 n n CG2 HG22 DVA sing 135 n n CG2 HG23 DVA sing 136 n n C O DVA doub 137 n n C OXT DVA sing 138 n n OXT HXT DVA sing 139 n n # _atom_sites.entry_id 3VNS _atom_sites.fract_transf_matrix[1][1] 0.006388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 601 532 AMP AMP . C 3 DVA A 1 602 534 DVA DVA . D 4 HOH A 1 701 601 HOH HOH . D 4 HOH A 2 702 602 HOH HOH . D 4 HOH A 3 703 603 HOH HOH . D 4 HOH A 4 704 604 HOH HOH . D 4 HOH A 5 705 605 HOH HOH . D 4 HOH A 6 706 606 HOH HOH . D 4 HOH A 7 707 607 HOH HOH . D 4 HOH A 8 708 608 HOH HOH . D 4 HOH A 9 709 609 HOH HOH . D 4 HOH A 10 710 610 HOH HOH . D 4 HOH A 11 711 611 HOH HOH . D 4 HOH A 12 712 612 HOH HOH . D 4 HOH A 13 713 613 HOH HOH . D 4 HOH A 14 714 614 HOH HOH . D 4 HOH A 15 715 615 HOH HOH . D 4 HOH A 16 716 616 HOH HOH . D 4 HOH A 17 717 617 HOH HOH . D 4 HOH A 18 718 618 HOH HOH . D 4 HOH A 19 719 619 HOH HOH . D 4 HOH A 20 720 620 HOH HOH . D 4 HOH A 21 721 621 HOH HOH . D 4 HOH A 22 722 622 HOH HOH . D 4 HOH A 23 723 623 HOH HOH . D 4 HOH A 24 724 624 HOH HOH . D 4 HOH A 25 725 625 HOH HOH . D 4 HOH A 26 726 626 HOH HOH . D 4 HOH A 27 727 627 HOH HOH . D 4 HOH A 28 728 628 HOH HOH . D 4 HOH A 29 729 629 HOH HOH . D 4 HOH A 30 730 630 HOH HOH . D 4 HOH A 31 731 631 HOH HOH . D 4 HOH A 32 732 632 HOH HOH . D 4 HOH A 33 733 633 HOH HOH . D 4 HOH A 34 734 634 HOH HOH . D 4 HOH A 35 735 635 HOH HOH . D 4 HOH A 36 736 636 HOH HOH . D 4 HOH A 37 737 637 HOH HOH . D 4 HOH A 38 738 638 HOH HOH . D 4 HOH A 39 739 639 HOH HOH . D 4 HOH A 40 740 640 HOH HOH . D 4 HOH A 41 741 641 HOH HOH . D 4 HOH A 42 742 642 HOH HOH . D 4 HOH A 43 743 643 HOH HOH . D 4 HOH A 44 744 644 HOH HOH . D 4 HOH A 45 745 645 HOH HOH . D 4 HOH A 46 746 646 HOH HOH . D 4 HOH A 47 747 647 HOH HOH . D 4 HOH A 48 748 648 HOH HOH . D 4 HOH A 49 749 649 HOH HOH . D 4 HOH A 50 750 650 HOH HOH . D 4 HOH A 51 751 651 HOH HOH . D 4 HOH A 52 752 652 HOH HOH . D 4 HOH A 53 753 653 HOH HOH . D 4 HOH A 54 754 654 HOH HOH . D 4 HOH A 55 755 655 HOH HOH . D 4 HOH A 56 756 656 HOH HOH . D 4 HOH A 57 757 657 HOH HOH . D 4 HOH A 58 758 658 HOH HOH . D 4 HOH A 59 759 659 HOH HOH . D 4 HOH A 60 760 660 HOH HOH . D 4 HOH A 61 761 661 HOH HOH . D 4 HOH A 62 762 662 HOH HOH . D 4 HOH A 63 763 663 HOH HOH . D 4 HOH A 64 764 664 HOH HOH . D 4 HOH A 65 765 665 HOH HOH . D 4 HOH A 66 766 666 HOH HOH . D 4 HOH A 67 767 667 HOH HOH . D 4 HOH A 68 768 668 HOH HOH . D 4 HOH A 69 769 669 HOH HOH . D 4 HOH A 70 770 670 HOH HOH . D 4 HOH A 71 771 671 HOH HOH . D 4 HOH A 72 772 672 HOH HOH . D 4 HOH A 73 773 673 HOH HOH . D 4 HOH A 74 774 674 HOH HOH . D 4 HOH A 75 775 675 HOH HOH . D 4 HOH A 76 776 676 HOH HOH . D 4 HOH A 77 777 677 HOH HOH . D 4 HOH A 78 778 678 HOH HOH . D 4 HOH A 79 779 679 HOH HOH . D 4 HOH A 80 780 680 HOH HOH . D 4 HOH A 81 781 681 HOH HOH . D 4 HOH A 82 782 682 HOH HOH . D 4 HOH A 83 783 683 HOH HOH . D 4 HOH A 84 784 684 HOH HOH . D 4 HOH A 85 785 685 HOH HOH . D 4 HOH A 86 786 686 HOH HOH . D 4 HOH A 87 787 687 HOH HOH . D 4 HOH A 88 788 688 HOH HOH . D 4 HOH A 89 789 689 HOH HOH . D 4 HOH A 90 790 690 HOH HOH . D 4 HOH A 91 791 691 HOH HOH . D 4 HOH A 92 792 692 HOH HOH . D 4 HOH A 93 793 693 HOH HOH . D 4 HOH A 94 794 694 HOH HOH . D 4 HOH A 95 795 695 HOH HOH . D 4 HOH A 96 796 696 HOH HOH . D 4 HOH A 97 797 697 HOH HOH . D 4 HOH A 98 798 698 HOH HOH . D 4 HOH A 99 799 699 HOH HOH . D 4 HOH A 100 800 700 HOH HOH . D 4 HOH A 101 801 701 HOH HOH . D 4 HOH A 102 802 702 HOH HOH . D 4 HOH A 103 803 703 HOH HOH . D 4 HOH A 104 804 704 HOH HOH . D 4 HOH A 105 805 705 HOH HOH . D 4 HOH A 106 806 706 HOH HOH . D 4 HOH A 107 807 707 HOH HOH . D 4 HOH A 108 808 708 HOH HOH . D 4 HOH A 109 809 709 HOH HOH . D 4 HOH A 110 810 710 HOH HOH . D 4 HOH A 111 811 711 HOH HOH . D 4 HOH A 112 812 712 HOH HOH . D 4 HOH A 113 813 713 HOH HOH . D 4 HOH A 114 814 714 HOH HOH . D 4 HOH A 115 815 715 HOH HOH . D 4 HOH A 116 816 716 HOH HOH . D 4 HOH A 117 817 717 HOH HOH . D 4 HOH A 118 818 718 HOH HOH . D 4 HOH A 119 819 719 HOH HOH . D 4 HOH A 120 820 720 HOH HOH . D 4 HOH A 121 821 721 HOH HOH . D 4 HOH A 122 822 722 HOH HOH . D 4 HOH A 123 823 723 HOH HOH . D 4 HOH A 124 824 724 HOH HOH . D 4 HOH A 125 825 725 HOH HOH . D 4 HOH A 126 826 726 HOH HOH . D 4 HOH A 127 827 727 HOH HOH . D 4 HOH A 128 828 728 HOH HOH . D 4 HOH A 129 829 729 HOH HOH . D 4 HOH A 130 830 730 HOH HOH . D 4 HOH A 131 831 731 HOH HOH . D 4 HOH A 132 832 732 HOH HOH . D 4 HOH A 133 833 733 HOH HOH . D 4 HOH A 134 834 734 HOH HOH . D 4 HOH A 135 835 735 HOH HOH . D 4 HOH A 136 836 736 HOH HOH . D 4 HOH A 137 837 737 HOH HOH . D 4 HOH A 138 838 738 HOH HOH . D 4 HOH A 139 839 739 HOH HOH . D 4 HOH A 140 840 740 HOH HOH . D 4 HOH A 141 841 741 HOH HOH . D 4 HOH A 142 842 742 HOH HOH . D 4 HOH A 143 843 743 HOH HOH . D 4 HOH A 144 844 744 HOH HOH . D 4 HOH A 145 845 745 HOH HOH . D 4 HOH A 146 846 746 HOH HOH . D 4 HOH A 147 847 747 HOH HOH . D 4 HOH A 148 848 748 HOH HOH . D 4 HOH A 149 849 749 HOH HOH . D 4 HOH A 150 850 750 HOH HOH . D 4 HOH A 151 851 751 HOH HOH . D 4 HOH A 152 852 752 HOH HOH . D 4 HOH A 153 853 753 HOH HOH . D 4 HOH A 154 854 754 HOH HOH . D 4 HOH A 155 855 755 HOH HOH . D 4 HOH A 156 856 756 HOH HOH . D 4 HOH A 157 857 757 HOH HOH . D 4 HOH A 158 858 758 HOH HOH . D 4 HOH A 159 859 759 HOH HOH . D 4 HOH A 160 860 760 HOH HOH . D 4 HOH A 161 861 761 HOH HOH . D 4 HOH A 162 862 762 HOH HOH . D 4 HOH A 163 863 763 HOH HOH . D 4 HOH A 164 864 764 HOH HOH . D 4 HOH A 165 865 765 HOH HOH . D 4 HOH A 166 866 766 HOH HOH . D 4 HOH A 167 867 767 HOH HOH . D 4 HOH A 168 868 768 HOH HOH . D 4 HOH A 169 869 769 HOH HOH . D 4 HOH A 170 870 770 HOH HOH . D 4 HOH A 171 871 771 HOH HOH . D 4 HOH A 172 872 772 HOH HOH . D 4 HOH A 173 873 773 HOH HOH . D 4 HOH A 174 874 774 HOH HOH . D 4 HOH A 175 875 775 HOH HOH . D 4 HOH A 176 876 776 HOH HOH . D 4 HOH A 177 877 777 HOH HOH . D 4 HOH A 178 878 778 HOH HOH . D 4 HOH A 179 879 779 HOH HOH . D 4 HOH A 180 880 780 HOH HOH . D 4 HOH A 181 881 781 HOH HOH . D 4 HOH A 182 882 782 HOH HOH . D 4 HOH A 183 883 783 HOH HOH . D 4 HOH A 184 884 784 HOH HOH . D 4 HOH A 185 885 785 HOH HOH . D 4 HOH A 186 886 786 HOH HOH . D 4 HOH A 187 887 787 HOH HOH . D 4 HOH A 188 888 788 HOH HOH . D 4 HOH A 189 889 789 HOH HOH . D 4 HOH A 190 890 790 HOH HOH . D 4 HOH A 191 891 791 HOH HOH . D 4 HOH A 192 892 792 HOH HOH . D 4 HOH A 193 893 793 HOH HOH . D 4 HOH A 194 894 794 HOH HOH . D 4 HOH A 195 895 795 HOH HOH . D 4 HOH A 196 896 796 HOH HOH . D 4 HOH A 197 897 797 HOH HOH . D 4 HOH A 198 898 798 HOH HOH . D 4 HOH A 199 899 799 HOH HOH . D 4 HOH A 200 900 800 HOH HOH . D 4 HOH A 201 901 801 HOH HOH . D 4 HOH A 202 902 802 HOH HOH . D 4 HOH A 203 903 803 HOH HOH . D 4 HOH A 204 904 804 HOH HOH . D 4 HOH A 205 905 805 HOH HOH . D 4 HOH A 206 906 806 HOH HOH . D 4 HOH A 207 907 807 HOH HOH . D 4 HOH A 208 908 808 HOH HOH . D 4 HOH A 209 909 809 HOH HOH . D 4 HOH A 210 910 810 HOH HOH . D 4 HOH A 211 911 811 HOH HOH . D 4 HOH A 212 912 812 HOH HOH . D 4 HOH A 213 913 813 HOH HOH . D 4 HOH A 214 914 814 HOH HOH . D 4 HOH A 215 915 815 HOH HOH . D 4 HOH A 216 916 816 HOH HOH . D 4 HOH A 217 917 817 HOH HOH . D 4 HOH A 218 918 818 HOH HOH . D 4 HOH A 219 919 819 HOH HOH . D 4 HOH A 220 920 820 HOH HOH . D 4 HOH A 221 921 821 HOH HOH . D 4 HOH A 222 922 822 HOH HOH . D 4 HOH A 223 923 823 HOH HOH . D 4 HOH A 224 924 824 HOH HOH . D 4 HOH A 225 925 825 HOH HOH . D 4 HOH A 226 926 826 HOH HOH . D 4 HOH A 227 927 827 HOH HOH . D 4 HOH A 228 928 828 HOH HOH . D 4 HOH A 229 929 829 HOH HOH . D 4 HOH A 230 930 830 HOH HOH . D 4 HOH A 231 931 831 HOH HOH . D 4 HOH A 232 932 832 HOH HOH . D 4 HOH A 233 933 833 HOH HOH . D 4 HOH A 234 934 834 HOH HOH . D 4 HOH A 235 935 835 HOH HOH . D 4 HOH A 236 936 836 HOH HOH . D 4 HOH A 237 937 837 HOH HOH . D 4 HOH A 238 938 838 HOH HOH . D 4 HOH A 239 939 839 HOH HOH . D 4 HOH A 240 940 840 HOH HOH . D 4 HOH A 241 941 841 HOH HOH . D 4 HOH A 242 942 842 HOH HOH . D 4 HOH A 243 943 843 HOH HOH . D 4 HOH A 244 944 844 HOH HOH . D 4 HOH A 245 945 845 HOH HOH . D 4 HOH A 246 946 846 HOH HOH . D 4 HOH A 247 947 847 HOH HOH . D 4 HOH A 248 948 848 HOH HOH . D 4 HOH A 249 949 849 HOH HOH . D 4 HOH A 250 950 850 HOH HOH . D 4 HOH A 251 951 851 HOH HOH . D 4 HOH A 252 952 852 HOH HOH . D 4 HOH A 253 953 853 HOH HOH . D 4 HOH A 254 954 854 HOH HOH . D 4 HOH A 255 955 855 HOH HOH . D 4 HOH A 256 956 856 HOH HOH . D 4 HOH A 257 957 857 HOH HOH . D 4 HOH A 258 958 858 HOH HOH . D 4 HOH A 259 959 859 HOH HOH . D 4 HOH A 260 960 860 HOH HOH . D 4 HOH A 261 961 861 HOH HOH . D 4 HOH A 262 962 862 HOH HOH . D 4 HOH A 263 963 863 HOH HOH . D 4 HOH A 264 964 864 HOH HOH . D 4 HOH A 265 965 865 HOH HOH . D 4 HOH A 266 966 866 HOH HOH . D 4 HOH A 267 967 867 HOH HOH . D 4 HOH A 268 968 868 HOH HOH . D 4 HOH A 269 969 869 HOH HOH . D 4 HOH A 270 970 870 HOH HOH . D 4 HOH A 271 971 871 HOH HOH . D 4 HOH A 272 972 872 HOH HOH . D 4 HOH A 273 973 873 HOH HOH . D 4 HOH A 274 974 874 HOH HOH . D 4 HOH A 275 975 875 HOH HOH . D 4 HOH A 276 976 876 HOH HOH . D 4 HOH A 277 977 877 HOH HOH . D 4 HOH A 278 978 878 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DVA . . . C 3 0.852 26.373 48.934 1 25.78 ? N DVA 602 A 1 HETATM 2 C CA DVA . . . C 3 1.382 27.73 48.848 1 29.67 ? CA DVA 602 A 1 HETATM 3 C CB DVA . . . C 3 0.318 28.747 48.377 1 31.47 ? CB DVA 602 A 1 HETATM 4 C CG1 DVA . . . C 3 -0.098 28.471 46.939 1 32.79 ? CG1 DVA 602 A 1 HETATM 5 C CG2 DVA . . . C 3 -0.875 28.722 49.295 1 29.86 ? CG2 DVA 602 A 1 HETATM 6 C C DVA . . . C 3 2.569 27.774 47.896 1 36.91 ? C DVA 602 A 1 HETATM 7 O O DVA . . . C 3 3.132 26.728 47.558 1 36.38 ? O DVA 602 A 1 HETATM 8 O OXT DVA . . . C 3 2.984 28.847 47.451 1 33.68 ? OXT DVA 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #