data_3VNT
#
_model_server_result.job_id            5ioBwRG0RB--tLk3QOpvUg 
_model_server_result.datetime_utc      '2024-11-20 15:30:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vnt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2003}' 
#
_entry.id    3VNT 
#
_exptl.entry_id    3VNT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.88 
_cell.angle_gamma         90 
_cell.entry_id            3VNT 
_cell.length_a            135.615 
_cell.length_b            56.618 
_cell.length_c            51.819 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VNT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 145 n n 
C1 C2 EDO sing 146 n n 
C1 H11 EDO sing 147 n n 
C1 H12 EDO sing 148 n n 
O1 HO1 EDO sing 149 n n 
C2 O2 EDO sing 150 n n 
C2 H21 EDO sing 151 n n 
C2 H22 EDO sing 152 n n 
O2 HO2 EDO sing 153 n n 
#
_atom_sites.entry_id                     3VNT 
_atom_sites.fract_transf_matrix[1][1]    0.007374 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00063 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017662 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019368 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0JA A 1 2001 2001 0JA 0JA . 
C 3 EDO A 1 2002 2002 EDO EDO . 
D 3 EDO A 1 2003 2003 EDO EDO . 
E 3 EDO A 1 2004 2004 EDO EDO . 
F 4 HOH A 1 3001 3001 HOH HOH . 
F 4 HOH A 2 3002 3002 HOH HOH . 
F 4 HOH A 3 3003 3003 HOH HOH . 
F 4 HOH A 4 3004 3004 HOH HOH . 
F 4 HOH A 5 3005 3005 HOH HOH . 
F 4 HOH A 6 3006 3006 HOH HOH . 
F 4 HOH A 7 3007 3007 HOH HOH . 
F 4 HOH A 8 3008 3008 HOH HOH . 
F 4 HOH A 9 3009 3009 HOH HOH . 
F 4 HOH A 10 3010 3010 HOH HOH . 
F 4 HOH A 11 3011 3011 HOH HOH . 
F 4 HOH A 12 3012 3012 HOH HOH . 
F 4 HOH A 13 3013 3013 HOH HOH . 
F 4 HOH A 14 3014 3014 HOH HOH . 
F 4 HOH A 15 3015 3015 HOH HOH . 
F 4 HOH A 16 3016 3016 HOH HOH . 
F 4 HOH A 17 3017 3017 HOH HOH . 
F 4 HOH A 18 3018 3018 HOH HOH . 
F 4 HOH A 19 3019 3019 HOH HOH . 
F 4 HOH A 20 3020 3020 HOH HOH . 
F 4 HOH A 21 3021 3021 HOH HOH . 
F 4 HOH A 22 3022 3022 HOH HOH . 
F 4 HOH A 23 3023 3023 HOH HOH . 
F 4 HOH A 24 3024 3024 HOH HOH . 
F 4 HOH A 25 3025 3025 HOH HOH . 
F 4 HOH A 26 3026 3026 HOH HOH . 
F 4 HOH A 27 3027 3027 HOH HOH . 
F 4 HOH A 28 3028 3028 HOH HOH . 
F 4 HOH A 29 3029 3029 HOH HOH . 
F 4 HOH A 30 3030 3030 HOH HOH . 
F 4 HOH A 31 3031 3031 HOH HOH . 
F 4 HOH A 32 3032 3032 HOH HOH . 
F 4 HOH A 33 3033 3033 HOH HOH . 
F 4 HOH A 34 3034 3034 HOH HOH . 
F 4 HOH A 35 3035 3035 HOH HOH . 
F 4 HOH A 36 3036 3036 HOH HOH . 
F 4 HOH A 37 3037 3037 HOH HOH . 
F 4 HOH A 38 3038 3038 HOH HOH . 
F 4 HOH A 39 3039 3039 HOH HOH . 
F 4 HOH A 40 3040 3040 HOH HOH . 
F 4 HOH A 41 3041 3041 HOH HOH . 
F 4 HOH A 42 3042 3042 HOH HOH . 
F 4 HOH A 43 3043 3043 HOH HOH . 
F 4 HOH A 44 3044 3044 HOH HOH . 
F 4 HOH A 45 3045 3045 HOH HOH . 
F 4 HOH A 46 3046 3046 HOH HOH . 
F 4 HOH A 47 3047 3047 HOH HOH . 
F 4 HOH A 48 3048 3048 HOH HOH . 
F 4 HOH A 49 3049 3049 HOH HOH . 
F 4 HOH A 50 3050 3050 HOH HOH . 
F 4 HOH A 51 3051 3051 HOH HOH . 
F 4 HOH A 52 3052 3052 HOH HOH . 
F 4 HOH A 53 3053 3053 HOH HOH . 
F 4 HOH A 54 3054 3054 HOH HOH . 
F 4 HOH A 55 3055 3056 HOH HOH . 
F 4 HOH A 56 3056 3057 HOH HOH . 
F 4 HOH A 57 3057 3058 HOH HOH . 
F 4 HOH A 58 3058 3059 HOH HOH . 
F 4 HOH A 59 3059 3060 HOH HOH . 
F 4 HOH A 60 3060 3061 HOH HOH . 
F 4 HOH A 61 3061 3062 HOH HOH . 
F 4 HOH A 62 3062 3063 HOH HOH . 
F 4 HOH A 63 3063 3064 HOH HOH . 
F 4 HOH A 64 3064 3065 HOH HOH . 
F 4 HOH A 65 3065 3066 HOH HOH . 
F 4 HOH A 66 3066 3067 HOH HOH . 
F 4 HOH A 67 3067 3068 HOH HOH . 
F 4 HOH A 68 3068 3069 HOH HOH . 
F 4 HOH A 69 3069 3070 HOH HOH . 
F 4 HOH A 70 3070 3071 HOH HOH . 
F 4 HOH A 71 3071 3072 HOH HOH . 
F 4 HOH A 72 3072 3073 HOH HOH . 
F 4 HOH A 73 3073 3074 HOH HOH . 
F 4 HOH A 74 3074 3075 HOH HOH . 
F 4 HOH A 75 3075 3076 HOH HOH . 
F 4 HOH A 76 3076 3077 HOH HOH . 
F 4 HOH A 77 3077 3078 HOH HOH . 
F 4 HOH A 78 3078 3079 HOH HOH . 
F 4 HOH A 79 3079 3080 HOH HOH . 
F 4 HOH A 80 3080 3081 HOH HOH . 
F 4 HOH A 81 3081 3082 HOH HOH . 
F 4 HOH A 82 3082 3083 HOH HOH . 
F 4 HOH A 83 3083 3084 HOH HOH . 
F 4 HOH A 84 3084 3085 HOH HOH . 
F 4 HOH A 85 3085 3086 HOH HOH . 
F 4 HOH A 86 3086 3087 HOH HOH . 
F 4 HOH A 87 3087 3088 HOH HOH . 
F 4 HOH A 88 3088 3089 HOH HOH . 
F 4 HOH A 89 3089 3090 HOH HOH . 
F 4 HOH A 90 3090 3091 HOH HOH . 
F 4 HOH A 91 3091 3092 HOH HOH . 
F 4 HOH A 92 3092 3093 HOH HOH . 
F 4 HOH A 93 3093 3094 HOH HOH . 
F 4 HOH A 94 3094 3095 HOH HOH . 
F 4 HOH A 95 3095 3096 HOH HOH . 
F 4 HOH A 96 3096 3097 HOH HOH . 
F 4 HOH A 97 3097 3098 HOH HOH . 
F 4 HOH A 98 3098 3099 HOH HOH . 
F 4 HOH A 99 3099 3100 HOH HOH . 
F 4 HOH A 100 3100 3101 HOH HOH . 
F 4 HOH A 101 3101 3102 HOH HOH . 
F 4 HOH A 102 3102 3103 HOH HOH . 
F 4 HOH A 103 3103 3104 HOH HOH . 
F 4 HOH A 104 3104 3105 HOH HOH . 
F 4 HOH A 105 3105 3106 HOH HOH . 
F 4 HOH A 106 3106 3108 HOH HOH . 
F 4 HOH A 107 3107 3110 HOH HOH . 
F 4 HOH A 108 3108 3111 HOH HOH . 
F 4 HOH A 109 3109 3112 HOH HOH . 
F 4 HOH A 110 3110 3113 HOH HOH . 
F 4 HOH A 111 3111 3114 HOH HOH . 
F 4 HOH A 112 3112 3115 HOH HOH . 
F 4 HOH A 113 3113 3116 HOH HOH . 
F 4 HOH A 114 3114 3117 HOH HOH . 
F 4 HOH A 115 3115 3118 HOH HOH . 
F 4 HOH A 116 3116 3119 HOH HOH . 
F 4 HOH A 117 3117 3120 HOH HOH . 
F 4 HOH A 118 3118 3121 HOH HOH . 
F 4 HOH A 119 3119 3122 HOH HOH . 
F 4 HOH A 120 3120 3123 HOH HOH . 
F 4 HOH A 121 3121 3124 HOH HOH . 
F 4 HOH A 122 3122 3125 HOH HOH . 
F 4 HOH A 123 3123 3126 HOH HOH . 
F 4 HOH A 124 3124 3127 HOH HOH . 
F 4 HOH A 125 3125 3128 HOH HOH . 
F 4 HOH A 126 3126 3129 HOH HOH . 
F 4 HOH A 127 3127 3130 HOH HOH . 
F 4 HOH A 128 3128 3131 HOH HOH . 
F 4 HOH A 129 3129 3132 HOH HOH . 
F 4 HOH A 130 3130 3133 HOH HOH . 
F 4 HOH A 131 3131 3134 HOH HOH . 
F 4 HOH A 132 3132 3135 HOH HOH . 
F 4 HOH A 133 3133 3136 HOH HOH . 
F 4 HOH A 134 3134 3137 HOH HOH . 
F 4 HOH A 135 3135 3138 HOH HOH . 
F 4 HOH A 136 3136 3139 HOH HOH . 
F 4 HOH A 137 3137 3140 HOH HOH . 
F 4 HOH A 138 3138 3141 HOH HOH . 
F 4 HOH A 139 3139 3142 HOH HOH . 
F 4 HOH A 140 3140 3143 HOH HOH . 
F 4 HOH A 141 3141 3144 HOH HOH . 
F 4 HOH A 142 3142 3145 HOH HOH . 
F 4 HOH A 143 3143 3146 HOH HOH . 
F 4 HOH A 144 3144 3147 HOH HOH . 
F 4 HOH A 145 3145 3148 HOH HOH . 
F 4 HOH A 146 3146 3149 HOH HOH . 
F 4 HOH A 147 3147 3150 HOH HOH . 
F 4 HOH A 148 3148 3151 HOH HOH . 
F 4 HOH A 149 3149 3152 HOH HOH . 
F 4 HOH A 150 3150 3154 HOH HOH . 
F 4 HOH A 151 3151 3155 HOH HOH . 
F 4 HOH A 152 3152 3156 HOH HOH . 
F 4 HOH A 153 3153 3157 HOH HOH . 
F 4 HOH A 154 3154 3158 HOH HOH . 
F 4 HOH A 155 3155 3159 HOH HOH . 
F 4 HOH A 156 3156 3160 HOH HOH . 
F 4 HOH A 157 3157 3161 HOH HOH . 
F 4 HOH A 158 3158 3162 HOH HOH . 
F 4 HOH A 159 3159 3163 HOH HOH . 
F 4 HOH A 160 3160 3164 HOH HOH . 
F 4 HOH A 161 3161 3165 HOH HOH . 
F 4 HOH A 162 3162 3166 HOH HOH . 
F 4 HOH A 163 3163 3167 HOH HOH . 
F 4 HOH A 164 3164 3168 HOH HOH . 
F 4 HOH A 165 3165 3169 HOH HOH . 
F 4 HOH A 166 3166 3170 HOH HOH . 
F 4 HOH A 167 3167 3171 HOH HOH . 
F 4 HOH A 168 3168 3172 HOH HOH . 
F 4 HOH A 169 3169 3173 HOH HOH . 
F 4 HOH A 170 3170 3174 HOH HOH . 
F 4 HOH A 171 3171 3175 HOH HOH . 
F 4 HOH A 172 3172 3176 HOH HOH . 
F 4 HOH A 173 3173 3177 HOH HOH . 
F 4 HOH A 174 3174 3178 HOH HOH . 
F 4 HOH A 175 3175 3179 HOH HOH . 
F 4 HOH A 176 3176 3180 HOH HOH . 
F 4 HOH A 177 3177 3181 HOH HOH . 
F 4 HOH A 178 3178 3182 HOH HOH . 
F 4 HOH A 179 3179 3183 HOH HOH . 
F 4 HOH A 180 3180 3184 HOH HOH . 
F 4 HOH A 181 3181 3185 HOH HOH . 
F 4 HOH A 182 3182 3186 HOH HOH . 
F 4 HOH A 183 3183 3187 HOH HOH . 
F 4 HOH A 184 3184 3188 HOH HOH . 
F 4 HOH A 185 3185 3189 HOH HOH . 
F 4 HOH A 186 3186 3190 HOH HOH . 
F 4 HOH A 187 3187 3191 HOH HOH . 
F 4 HOH A 188 3188 3192 HOH HOH . 
F 4 HOH A 189 3189 3193 HOH HOH . 
F 4 HOH A 190 3190 3194 HOH HOH . 
F 4 HOH A 191 3191 3195 HOH HOH . 
F 4 HOH A 192 3192 3196 HOH HOH . 
F 4 HOH A 193 3193 3197 HOH HOH . 
F 4 HOH A 194 3194 3198 HOH HOH . 
F 4 HOH A 195 3195 3199 HOH HOH . 
F 4 HOH A 196 3196 3200 HOH HOH . 
F 4 HOH A 197 3197 3201 HOH HOH . 
F 4 HOH A 198 3198 3202 HOH HOH . 
F 4 HOH A 199 3199 3203 HOH HOH . 
F 4 HOH A 200 3200 3204 HOH HOH . 
F 4 HOH A 201 3201 3205 HOH HOH . 
F 4 HOH A 202 3202 3206 HOH HOH . 
F 4 HOH A 203 3203 3207 HOH HOH . 
F 4 HOH A 204 3204 3208 HOH HOH . 
F 4 HOH A 205 3205 3209 HOH HOH . 
F 4 HOH A 206 3206 3210 HOH HOH . 
F 4 HOH A 207 3207 3211 HOH HOH . 
F 4 HOH A 208 3208 3212 HOH HOH . 
F 4 HOH A 209 3209 3213 HOH HOH . 
F 4 HOH A 210 3210 3214 HOH HOH . 
F 4 HOH A 211 3211 3215 HOH HOH . 
F 4 HOH A 212 3212 3216 HOH HOH . 
F 4 HOH A 213 3213 3217 HOH HOH . 
F 4 HOH A 214 3214 3218 HOH HOH . 
F 4 HOH A 215 3215 3219 HOH HOH . 
F 4 HOH A 216 3216 3220 HOH HOH . 
F 4 HOH A 217 3217 3221 HOH HOH . 
F 4 HOH A 218 3218 3222 HOH HOH . 
F 4 HOH A 219 3219 3223 HOH HOH . 
F 4 HOH A 220 3220 3224 HOH HOH . 
F 4 HOH A 221 3221 3225 HOH HOH . 
F 4 HOH A 222 3222 3226 HOH HOH . 
F 4 HOH A 223 3223 3227 HOH HOH . 
F 4 HOH A 224 3224 3228 HOH HOH . 
F 4 HOH A 225 3225 3229 HOH HOH . 
F 4 HOH A 226 3226 3230 HOH HOH . 
F 4 HOH A 227 3227 3231 HOH HOH . 
F 4 HOH A 228 3228 3232 HOH HOH . 
F 4 HOH A 229 3229 3233 HOH HOH . 
F 4 HOH A 230 3230 3234 HOH HOH . 
F 4 HOH A 231 3231 3235 HOH HOH . 
F 4 HOH A 232 3232 3236 HOH HOH . 
F 4 HOH A 233 3233 3237 HOH HOH . 
F 4 HOH A 234 3234 3238 HOH HOH . 
F 4 HOH A 235 3235 3239 HOH HOH . 
F 4 HOH A 236 3236 3240 HOH HOH . 
F 4 HOH A 237 3237 3241 HOH HOH . 
F 4 HOH A 238 3238 3242 HOH HOH . 
F 4 HOH A 239 3239 3243 HOH HOH . 
F 4 HOH A 240 3240 3244 HOH HOH . 
F 4 HOH A 241 3241 3245 HOH HOH . 
F 4 HOH A 242 3242 3246 HOH HOH . 
F 4 HOH A 243 3243 3247 HOH HOH . 
F 4 HOH A 244 3244 3248 HOH HOH . 
F 4 HOH A 245 3245 3249 HOH HOH . 
F 4 HOH A 246 3246 3250 HOH HOH . 
F 4 HOH A 247 3247 3251 HOH HOH . 
F 4 HOH A 248 3248 3252 HOH HOH . 
F 4 HOH A 249 3249 3253 HOH HOH . 
F 4 HOH A 250 3250 3254 HOH HOH . 
F 4 HOH A 251 3251 3255 HOH HOH . 
F 4 HOH A 252 3252 3256 HOH HOH . 
F 4 HOH A 253 3253 3257 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 33.413 -26.63 -35.779 1 45.44 ? C1 EDO 2003 A 1 
HETATM 2 O O1 EDO . . . D 3 33.107 -25.31 -35.304 1 34.19 ? O1 EDO 2003 A 1 
HETATM 3 C C2 EDO . . . D 3 32.619 -27.694 -35.037 1 46.89 ? C2 EDO 2003 A 1 
HETATM 4 O O2 EDO . . . D 3 31.385 -27.998 -35.705 1 36.37 ? O2 EDO 2003 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#