data_3VO8
#
_model_server_result.job_id            2_nwcj8mFu0eRtfcCg4t8w 
_model_server_result.datetime_utc      '2024-12-26 11:50:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vo8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    3VO8 
#
_exptl.entry_id    3VO8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         96.89 
_cell.angle_beta          103.57 
_cell.angle_gamma         108 
_cell.entry_id            3VO8 
_cell.length_a            44.039 
_cell.length_b            44.079 
_cell.length_c            85.993 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VO8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 202 A LEU 200 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc2 A O VAL 205 A VAL 203 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc3 A OD1 ASN 210 A ASN 208 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc4 A O LEU 211 A LEU 209 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc5 C CA CA . A CA 501 1_555 G O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc6 C CA CA . A CA 501 1_555 G O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc7 B O LEU 202 B LEU 200 1_555 E CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc8 B O VAL 205 B VAL 203 1_555 E CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc9 B OD1 ASN 210 B ASN 208 1_555 E CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc10 B O LEU 211 B LEU 209 1_555 E CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc11 E CA CA . B CA 501 1_555 H O HOH . B HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc12 E CA CA . B CA 501 1_555 H O HOH . B HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3VO8 
_atom_sites.fract_transf_matrix[1][1]    0.022707 
_atom_sites.fract_transf_matrix[1][2]    0.007378 
_atom_sites.fract_transf_matrix[1][3]    0.007174 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023854 
_atom_sites.fract_transf_matrix[2][3]    0.005077 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012231 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 501 501 CA CA . 
D 3 GDP A 1 502 502 GDP GDP . 
E 2 CA B 1 501 501 CA CA . 
F 3 GDP B 1 502 502 GDP GDP . 
G 4 HOH A 1 601 1 HOH HOH . 
G 4 HOH A 2 602 2 HOH HOH . 
G 4 HOH A 3 603 5 HOH HOH . 
G 4 HOH A 4 604 7 HOH HOH . 
G 4 HOH A 5 605 10 HOH HOH . 
G 4 HOH A 6 606 11 HOH HOH . 
G 4 HOH A 7 607 12 HOH HOH . 
G 4 HOH A 8 608 14 HOH HOH . 
G 4 HOH A 9 609 17 HOH HOH . 
G 4 HOH A 10 610 19 HOH HOH . 
G 4 HOH A 11 611 22 HOH HOH . 
G 4 HOH A 12 612 31 HOH HOH . 
G 4 HOH A 13 613 33 HOH HOH . 
G 4 HOH A 14 614 35 HOH HOH . 
G 4 HOH A 15 615 38 HOH HOH . 
G 4 HOH A 16 616 39 HOH HOH . 
G 4 HOH A 17 617 43 HOH HOH . 
G 4 HOH A 18 618 44 HOH HOH . 
G 4 HOH A 19 619 47 HOH HOH . 
G 4 HOH A 20 620 51 HOH HOH . 
G 4 HOH A 21 621 57 HOH HOH . 
G 4 HOH A 22 622 58 HOH HOH . 
G 4 HOH A 23 623 59 HOH HOH . 
G 4 HOH A 24 624 60 HOH HOH . 
G 4 HOH A 25 625 61 HOH HOH . 
G 4 HOH A 26 626 63 HOH HOH . 
G 4 HOH A 27 627 65 HOH HOH . 
G 4 HOH A 28 628 69 HOH HOH . 
G 4 HOH A 29 629 75 HOH HOH . 
G 4 HOH A 30 630 79 HOH HOH . 
G 4 HOH A 31 631 84 HOH HOH . 
G 4 HOH A 32 632 85 HOH HOH . 
G 4 HOH A 33 633 87 HOH HOH . 
G 4 HOH A 34 634 96 HOH HOH . 
G 4 HOH A 35 635 102 HOH HOH . 
G 4 HOH A 36 636 106 HOH HOH . 
G 4 HOH A 37 637 107 HOH HOH . 
G 4 HOH A 38 638 112 HOH HOH . 
G 4 HOH A 39 639 118 HOH HOH . 
G 4 HOH A 40 640 184 HOH HOH . 
G 4 HOH A 41 641 188 HOH HOH . 
G 4 HOH A 42 642 189 HOH HOH . 
G 4 HOH A 43 643 197 HOH HOH . 
G 4 HOH A 44 644 198 HOH HOH . 
G 4 HOH A 45 645 202 HOH HOH . 
G 4 HOH A 46 646 203 HOH HOH . 
G 4 HOH A 47 647 204 HOH HOH . 
G 4 HOH A 48 648 205 HOH HOH . 
G 4 HOH A 49 649 206 HOH HOH . 
H 4 HOH B 1 601 3 HOH HOH . 
H 4 HOH B 2 602 4 HOH HOH . 
H 4 HOH B 3 603 8 HOH HOH . 
H 4 HOH B 4 604 13 HOH HOH . 
H 4 HOH B 5 605 15 HOH HOH . 
H 4 HOH B 6 606 16 HOH HOH . 
H 4 HOH B 7 607 18 HOH HOH . 
H 4 HOH B 8 608 21 HOH HOH . 
H 4 HOH B 9 609 25 HOH HOH . 
H 4 HOH B 10 610 26 HOH HOH . 
H 4 HOH B 11 611 28 HOH HOH . 
H 4 HOH B 12 612 29 HOH HOH . 
H 4 HOH B 13 613 32 HOH HOH . 
H 4 HOH B 14 614 34 HOH HOH . 
H 4 HOH B 15 615 36 HOH HOH . 
H 4 HOH B 16 616 37 HOH HOH . 
H 4 HOH B 17 617 42 HOH HOH . 
H 4 HOH B 18 618 45 HOH HOH . 
H 4 HOH B 19 619 48 HOH HOH . 
H 4 HOH B 20 620 49 HOH HOH . 
H 4 HOH B 21 621 52 HOH HOH . 
H 4 HOH B 22 622 54 HOH HOH . 
H 4 HOH B 23 623 56 HOH HOH . 
H 4 HOH B 24 624 62 HOH HOH . 
H 4 HOH B 25 625 66 HOH HOH . 
H 4 HOH B 26 626 71 HOH HOH . 
H 4 HOH B 27 627 72 HOH HOH . 
H 4 HOH B 28 628 76 HOH HOH . 
H 4 HOH B 29 629 81 HOH HOH . 
H 4 HOH B 30 630 82 HOH HOH . 
H 4 HOH B 31 631 83 HOH HOH . 
H 4 HOH B 32 632 90 HOH HOH . 
H 4 HOH B 33 633 99 HOH HOH . 
H 4 HOH B 34 634 101 HOH HOH . 
H 4 HOH B 35 635 110 HOH HOH . 
H 4 HOH B 36 636 113 HOH HOH . 
H 4 HOH B 37 637 151 HOH HOH . 
H 4 HOH B 38 638 185 HOH HOH . 
H 4 HOH B 39 639 186 HOH HOH . 
H 4 HOH B 40 640 187 HOH HOH . 
H 4 HOH B 41 641 190 HOH HOH . 
H 4 HOH B 42 642 191 HOH HOH . 
H 4 HOH B 43 643 192 HOH HOH . 
H 4 HOH B 44 644 194 HOH HOH . 
H 4 HOH B 45 645 195 HOH HOH . 
H 4 HOH B 46 646 196 HOH HOH . 
H 4 HOH B 47 647 207 HOH HOH . 
H 4 HOH B 48 648 208 HOH HOH . 
H 4 HOH B 49 649 209 HOH HOH . 
H 4 HOH B 50 650 211 HOH HOH . 
H 4 HOH B 51 651 212 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -12.359 
_atom_site.Cartn_y               -11.489 
_atom_site.Cartn_z               -36.04 
_atom_site.occupancy             0.75 
_atom_site.B_iso_or_equiv        36.9 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#