data_3VOA # _model_server_result.job_id c8pcsJyhMUAY3lscds6NgQ _model_server_result.datetime_utc '2024-12-06 23:08:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3voa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 3VOA # _exptl.entry_id 3VOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.57 _cell.angle_gamma 90 _cell.entry_id 3VOA _cell.length_a 72.828 _cell.length_b 49.551 _cell.length_c 88.413 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 192 A LEU 200 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc2 A O VAL 195 A VAL 203 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A OD1 ASN 200 A ASN 208 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc4 A O LEU 201 A LEU 209 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc5 C CA CA . A CA 402 1_555 D O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc6 C CA CA . A CA 402 1_555 D O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3VOA _atom_sites.fract_transf_matrix[1][1] 0.013731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005429 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 401 400 GDP GDP . C 3 CA A 1 402 1 CA CA . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . D 4 HOH A 27 527 27 HOH HOH . D 4 HOH A 28 528 28 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 34 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 37 HOH HOH . D 4 HOH A 38 538 38 HOH HOH . D 4 HOH A 39 539 39 HOH HOH . D 4 HOH A 40 540 40 HOH HOH . D 4 HOH A 41 541 41 HOH HOH . D 4 HOH A 42 542 42 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 44 HOH HOH . D 4 HOH A 45 545 45 HOH HOH . D 4 HOH A 46 546 46 HOH HOH . D 4 HOH A 47 547 47 HOH HOH . D 4 HOH A 48 548 48 HOH HOH . D 4 HOH A 49 549 49 HOH HOH . D 4 HOH A 50 550 50 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 52 HOH HOH . D 4 HOH A 53 553 53 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 55 HOH HOH . D 4 HOH A 56 556 56 HOH HOH . D 4 HOH A 57 557 57 HOH HOH . D 4 HOH A 58 558 58 HOH HOH . D 4 HOH A 59 559 59 HOH HOH . D 4 HOH A 60 560 60 HOH HOH . D 4 HOH A 61 561 61 HOH HOH . D 4 HOH A 62 562 63 HOH HOH . D 4 HOH A 63 563 64 HOH HOH . D 4 HOH A 64 564 65 HOH HOH . D 4 HOH A 65 565 66 HOH HOH . D 4 HOH A 66 566 67 HOH HOH . D 4 HOH A 67 567 69 HOH HOH . D 4 HOH A 68 568 70 HOH HOH . D 4 HOH A 69 569 71 HOH HOH . D 4 HOH A 70 570 72 HOH HOH . D 4 HOH A 71 571 73 HOH HOH . D 4 HOH A 72 572 74 HOH HOH . D 4 HOH A 73 573 75 HOH HOH . D 4 HOH A 74 574 76 HOH HOH . D 4 HOH A 75 575 77 HOH HOH . D 4 HOH A 76 576 78 HOH HOH . D 4 HOH A 77 577 79 HOH HOH . D 4 HOH A 78 578 80 HOH HOH . D 4 HOH A 79 579 81 HOH HOH . D 4 HOH A 80 580 82 HOH HOH . D 4 HOH A 81 581 83 HOH HOH . D 4 HOH A 82 582 84 HOH HOH . D 4 HOH A 83 583 85 HOH HOH . D 4 HOH A 84 584 86 HOH HOH . D 4 HOH A 85 585 87 HOH HOH . D 4 HOH A 86 586 88 HOH HOH . D 4 HOH A 87 587 89 HOH HOH . D 4 HOH A 88 588 90 HOH HOH . D 4 HOH A 89 589 91 HOH HOH . D 4 HOH A 90 590 92 HOH HOH . D 4 HOH A 91 591 93 HOH HOH . D 4 HOH A 92 592 94 HOH HOH . D 4 HOH A 93 593 95 HOH HOH . D 4 HOH A 94 594 97 HOH HOH . D 4 HOH A 95 595 99 HOH HOH . D 4 HOH A 96 596 100 HOH HOH . D 4 HOH A 97 597 101 HOH HOH . D 4 HOH A 98 598 102 HOH HOH . D 4 HOH A 99 599 103 HOH HOH . D 4 HOH A 100 600 104 HOH HOH . D 4 HOH A 101 601 105 HOH HOH . D 4 HOH A 102 602 106 HOH HOH . D 4 HOH A 103 603 107 HOH HOH . D 4 HOH A 104 604 108 HOH HOH . D 4 HOH A 105 605 109 HOH HOH . D 4 HOH A 106 606 110 HOH HOH . D 4 HOH A 107 607 111 HOH HOH . D 4 HOH A 108 608 112 HOH HOH . D 4 HOH A 109 609 113 HOH HOH . D 4 HOH A 110 610 114 HOH HOH . D 4 HOH A 111 611 115 HOH HOH . D 4 HOH A 112 612 116 HOH HOH . D 4 HOH A 113 613 118 HOH HOH . D 4 HOH A 114 614 119 HOH HOH . D 4 HOH A 115 615 120 HOH HOH . D 4 HOH A 116 616 121 HOH HOH . D 4 HOH A 117 617 122 HOH HOH . D 4 HOH A 118 618 123 HOH HOH . D 4 HOH A 119 619 124 HOH HOH . D 4 HOH A 120 620 125 HOH HOH . D 4 HOH A 121 621 127 HOH HOH . D 4 HOH A 122 622 128 HOH HOH . D 4 HOH A 123 623 129 HOH HOH . D 4 HOH A 124 624 130 HOH HOH . D 4 HOH A 125 625 131 HOH HOH . D 4 HOH A 126 626 132 HOH HOH . D 4 HOH A 127 627 133 HOH HOH . D 4 HOH A 128 628 134 HOH HOH . D 4 HOH A 129 629 135 HOH HOH . D 4 HOH A 130 630 136 HOH HOH . D 4 HOH A 131 631 137 HOH HOH . D 4 HOH A 132 632 138 HOH HOH . D 4 HOH A 133 633 139 HOH HOH . D 4 HOH A 134 634 140 HOH HOH . D 4 HOH A 135 635 141 HOH HOH . D 4 HOH A 136 636 142 HOH HOH . D 4 HOH A 137 637 143 HOH HOH . D 4 HOH A 138 638 144 HOH HOH . D 4 HOH A 139 639 146 HOH HOH . D 4 HOH A 140 640 147 HOH HOH . D 4 HOH A 141 641 148 HOH HOH . D 4 HOH A 142 642 150 HOH HOH . D 4 HOH A 143 643 151 HOH HOH . D 4 HOH A 144 644 152 HOH HOH . D 4 HOH A 145 645 153 HOH HOH . D 4 HOH A 146 646 154 HOH HOH . D 4 HOH A 147 647 156 HOH HOH . D 4 HOH A 148 648 157 HOH HOH . D 4 HOH A 149 649 158 HOH HOH . D 4 HOH A 150 650 159 HOH HOH . D 4 HOH A 151 651 160 HOH HOH . D 4 HOH A 152 652 161 HOH HOH . D 4 HOH A 153 653 162 HOH HOH . D 4 HOH A 154 654 163 HOH HOH . D 4 HOH A 155 655 165 HOH HOH . D 4 HOH A 156 656 166 HOH HOH . D 4 HOH A 157 657 167 HOH HOH . D 4 HOH A 158 658 168 HOH HOH . D 4 HOH A 159 659 169 HOH HOH . D 4 HOH A 160 660 171 HOH HOH . D 4 HOH A 161 661 172 HOH HOH . D 4 HOH A 162 662 174 HOH HOH . D 4 HOH A 163 663 175 HOH HOH . D 4 HOH A 164 664 176 HOH HOH . D 4 HOH A 165 665 177 HOH HOH . D 4 HOH A 166 666 178 HOH HOH . D 4 HOH A 167 667 179 HOH HOH . D 4 HOH A 168 668 180 HOH HOH . D 4 HOH A 169 669 181 HOH HOH . D 4 HOH A 170 670 182 HOH HOH . D 4 HOH A 171 671 184 HOH HOH . D 4 HOH A 172 672 187 HOH HOH . D 4 HOH A 173 673 188 HOH HOH . D 4 HOH A 174 674 189 HOH HOH . D 4 HOH A 175 675 191 HOH HOH . D 4 HOH A 176 676 193 HOH HOH . D 4 HOH A 177 677 194 HOH HOH . D 4 HOH A 178 678 195 HOH HOH . D 4 HOH A 179 679 196 HOH HOH . D 4 HOH A 180 680 197 HOH HOH . D 4 HOH A 181 681 199 HOH HOH . D 4 HOH A 182 682 200 HOH HOH . D 4 HOH A 183 683 201 HOH HOH . D 4 HOH A 184 684 202 HOH HOH . D 4 HOH A 185 685 203 HOH HOH . D 4 HOH A 186 686 204 HOH HOH . D 4 HOH A 187 687 205 HOH HOH . D 4 HOH A 188 688 206 HOH HOH . D 4 HOH A 189 689 207 HOH HOH . D 4 HOH A 190 690 208 HOH HOH . D 4 HOH A 191 691 209 HOH HOH . D 4 HOH A 192 692 210 HOH HOH . D 4 HOH A 193 693 211 HOH HOH . D 4 HOH A 194 694 212 HOH HOH . D 4 HOH A 195 695 213 HOH HOH . D 4 HOH A 196 696 214 HOH HOH . D 4 HOH A 197 697 215 HOH HOH . D 4 HOH A 198 698 216 HOH HOH . D 4 HOH A 199 699 217 HOH HOH . D 4 HOH A 200 700 218 HOH HOH . D 4 HOH A 201 701 220 HOH HOH . D 4 HOH A 202 702 221 HOH HOH . D 4 HOH A 203 703 222 HOH HOH . D 4 HOH A 204 704 223 HOH HOH . D 4 HOH A 205 705 224 HOH HOH . D 4 HOH A 206 706 226 HOH HOH . D 4 HOH A 207 707 227 HOH HOH . D 4 HOH A 208 708 228 HOH HOH . D 4 HOH A 209 709 229 HOH HOH . D 4 HOH A 210 710 230 HOH HOH . D 4 HOH A 211 711 231 HOH HOH . D 4 HOH A 212 712 232 HOH HOH . D 4 HOH A 213 713 233 HOH HOH . D 4 HOH A 214 714 234 HOH HOH . D 4 HOH A 215 715 235 HOH HOH . D 4 HOH A 216 716 236 HOH HOH . D 4 HOH A 217 717 237 HOH HOH . D 4 HOH A 218 718 238 HOH HOH . D 4 HOH A 219 719 239 HOH HOH . D 4 HOH A 220 720 240 HOH HOH . D 4 HOH A 221 721 241 HOH HOH . D 4 HOH A 222 722 242 HOH HOH . D 4 HOH A 223 723 243 HOH HOH . D 4 HOH A 224 724 244 HOH HOH . D 4 HOH A 225 725 245 HOH HOH . D 4 HOH A 226 726 246 HOH HOH . D 4 HOH A 227 727 247 HOH HOH . D 4 HOH A 228 728 248 HOH HOH . D 4 HOH A 229 729 249 HOH HOH . D 4 HOH A 230 730 250 HOH HOH . D 4 HOH A 231 731 251 HOH HOH . D 4 HOH A 232 732 252 HOH HOH . D 4 HOH A 233 733 253 HOH HOH . D 4 HOH A 234 734 254 HOH HOH . D 4 HOH A 235 735 255 HOH HOH . D 4 HOH A 236 736 256 HOH HOH . D 4 HOH A 237 737 257 HOH HOH . D 4 HOH A 238 738 258 HOH HOH . D 4 HOH A 239 739 260 HOH HOH . D 4 HOH A 240 740 261 HOH HOH . D 4 HOH A 241 742 263 HOH HOH . D 4 HOH A 242 743 264 HOH HOH . D 4 HOH A 243 744 265 HOH HOH . D 4 HOH A 244 745 266 HOH HOH . D 4 HOH A 245 746 267 HOH HOH . D 4 HOH A 246 747 268 HOH HOH . D 4 HOH A 247 748 270 HOH HOH . D 4 HOH A 248 749 271 HOH HOH . D 4 HOH A 249 750 272 HOH HOH . D 4 HOH A 250 751 273 HOH HOH . D 4 HOH A 251 752 274 HOH HOH . D 4 HOH A 252 753 278 HOH HOH . D 4 HOH A 253 754 279 HOH HOH . D 4 HOH A 254 755 280 HOH HOH . D 4 HOH A 255 756 281 HOH HOH . D 4 HOH A 256 757 285 HOH HOH . D 4 HOH A 257 758 289 HOH HOH . D 4 HOH A 258 759 291 HOH HOH . D 4 HOH A 259 760 293 HOH HOH . D 4 HOH A 260 761 294 HOH HOH . D 4 HOH A 261 762 295 HOH HOH . D 4 HOH A 262 763 296 HOH HOH . D 4 HOH A 263 764 297 HOH HOH . D 4 HOH A 264 765 298 HOH HOH . D 4 HOH A 265 766 299 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -19.856 _atom_site.Cartn_y 16.402 _atom_site.Cartn_z 23.798 _atom_site.occupancy 0.66 _atom_site.B_iso_or_equiv 20.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #