data_3VP4 # _model_server_result.job_id zjI7GLvfICMeE1uB28JTdQ _model_server_result.datetime_utc '2024-12-22 03:19:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 3VP4 # _exptl.entry_id 3VP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.351 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5,5'-butane-1,4-diylbis(1,3,4-thiadiazol-2-amine)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3VP4 _cell.length_a 139.555 _cell.length_b 139.555 _cell.length_c 156.866 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H12 N6 S2' _chem_comp.formula_weight 256.351 _chem_comp.id BP9 _chem_comp.mon_nstd_flag . _chem_comp.name "5,5'-butane-1,4-diylbis(1,3,4-thiadiazol-2-amine)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N27 C31 BP9 sing 70 n n S35 C31 BP9 sing 71 n y S35 C33 BP9 sing 72 n y C31 N28 BP9 doub 73 n y C33 C30 BP9 sing 74 n n C33 N26 BP9 doub 75 n y N28 N26 BP9 sing 76 n y C30 C32 BP9 sing 77 n n N27 H1 BP9 sing 78 n n N27 H2 BP9 sing 79 n n C30 H3 BP9 sing 80 n n C30 H4 BP9 sing 81 n n C32 H5 BP9 sing 82 n n C32 H6 BP9 sing 83 n n C32 C1 BP9 sing 84 n n C1 C2 BP9 sing 85 n n C2 C3 BP9 sing 86 n n C3 N1 BP9 doub 87 n y N1 N2 BP9 sing 88 n y N2 C6 BP9 doub 89 n y C6 S1 BP9 sing 90 n y S1 C3 BP9 sing 91 n y C6 N3 BP9 sing 92 n n C1 H7 BP9 sing 93 n n C1 H8 BP9 sing 94 n n C2 H9 BP9 sing 95 n n C2 H10 BP9 sing 96 n n N3 H11 BP9 sing 97 n n N3 H12 BP9 sing 98 n n # _atom_sites.entry_id 3VP4 _atom_sites.fract_transf_matrix[1][1] 0.007166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BP9 A 1 601 1 BP9 BP . C 3 HOH A 1 701 532 HOH HOH . C 3 HOH A 2 702 533 HOH HOH . C 3 HOH A 3 703 534 HOH HOH . C 3 HOH A 4 704 535 HOH HOH . C 3 HOH A 5 705 536 HOH HOH . C 3 HOH A 6 706 537 HOH HOH . C 3 HOH A 7 707 538 HOH HOH . C 3 HOH A 8 708 539 HOH HOH . C 3 HOH A 9 709 540 HOH HOH . C 3 HOH A 10 710 541 HOH HOH . C 3 HOH A 11 711 542 HOH HOH . C 3 HOH A 12 712 543 HOH HOH . C 3 HOH A 13 713 544 HOH HOH . C 3 HOH A 14 714 545 HOH HOH . C 3 HOH A 15 715 546 HOH HOH . C 3 HOH A 16 716 547 HOH HOH . C 3 HOH A 17 717 548 HOH HOH . C 3 HOH A 18 718 549 HOH HOH . C 3 HOH A 19 719 550 HOH HOH . C 3 HOH A 20 720 551 HOH HOH . C 3 HOH A 21 721 552 HOH HOH . C 3 HOH A 22 722 553 HOH HOH . C 3 HOH A 23 723 554 HOH HOH . C 3 HOH A 24 724 555 HOH HOH . C 3 HOH A 25 725 556 HOH HOH . C 3 HOH A 26 726 557 HOH HOH . C 3 HOH A 27 727 558 HOH HOH . C 3 HOH A 28 728 559 HOH HOH . C 3 HOH A 29 729 560 HOH HOH . C 3 HOH A 30 730 561 HOH HOH . C 3 HOH A 31 731 562 HOH HOH . C 3 HOH A 32 732 563 HOH HOH . C 3 HOH A 33 733 564 HOH HOH . C 3 HOH A 34 734 565 HOH HOH . C 3 HOH A 35 735 566 HOH HOH . C 3 HOH A 36 736 567 HOH HOH . C 3 HOH A 37 737 568 HOH HOH . C 3 HOH A 38 738 569 HOH HOH . C 3 HOH A 39 739 570 HOH HOH . C 3 HOH A 40 740 571 HOH HOH . C 3 HOH A 41 741 572 HOH HOH . C 3 HOH A 42 742 573 HOH HOH . C 3 HOH A 43 743 574 HOH HOH . C 3 HOH A 44 744 575 HOH HOH . C 3 HOH A 45 745 576 HOH HOH . C 3 HOH A 46 746 577 HOH HOH . C 3 HOH A 47 747 578 HOH HOH . C 3 HOH A 48 748 579 HOH HOH . C 3 HOH A 49 749 580 HOH HOH . C 3 HOH A 50 750 581 HOH HOH . C 3 HOH A 51 751 582 HOH HOH . C 3 HOH A 52 752 583 HOH HOH . C 3 HOH A 53 753 584 HOH HOH . C 3 HOH A 54 754 585 HOH HOH . C 3 HOH A 55 755 586 HOH HOH . C 3 HOH A 56 756 587 HOH HOH . C 3 HOH A 57 757 588 HOH HOH . C 3 HOH A 58 758 589 HOH HOH . C 3 HOH A 59 759 590 HOH HOH . C 3 HOH A 60 760 591 HOH HOH . C 3 HOH A 61 761 592 HOH HOH . C 3 HOH A 62 762 593 HOH HOH . C 3 HOH A 63 763 594 HOH HOH . C 3 HOH A 64 764 595 HOH HOH . C 3 HOH A 65 765 596 HOH HOH . C 3 HOH A 66 766 597 HOH HOH . C 3 HOH A 67 767 598 HOH HOH . C 3 HOH A 68 768 599 HOH HOH . C 3 HOH A 69 769 600 HOH HOH . C 3 HOH A 70 770 601 HOH HOH . C 3 HOH A 71 771 602 HOH HOH . C 3 HOH A 72 772 603 HOH HOH . C 3 HOH A 73 773 604 HOH HOH . C 3 HOH A 74 774 605 HOH HOH . C 3 HOH A 75 775 606 HOH HOH . C 3 HOH A 76 776 607 HOH HOH . C 3 HOH A 77 777 608 HOH HOH . C 3 HOH A 78 778 609 HOH HOH . C 3 HOH A 79 779 610 HOH HOH . C 3 HOH A 80 780 611 HOH HOH . C 3 HOH A 81 781 612 HOH HOH . C 3 HOH A 82 782 613 HOH HOH . C 3 HOH A 83 783 614 HOH HOH . C 3 HOH A 84 784 615 HOH HOH . C 3 HOH A 85 785 616 HOH HOH . C 3 HOH A 86 786 617 HOH HOH . C 3 HOH A 87 787 618 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N26 BP9 . . . B 2 4.305 -9.991 0.53 1 77.01 ? N26 BP9 601 A 1 HETATM 2 N N27 BP9 . . . B 2 2.324 -10.045 -2.65 1 78.3 ? N27 BP9 601 A 1 HETATM 3 N N28 BP9 . . . B 2 3.128 -10.025 -0.127 1 78.5 ? N28 BP9 601 A 1 HETATM 4 C C30 BP9 . . . B 2 6.681 -9.92 0.444 1 76.47 ? C30 BP9 601 A 1 HETATM 5 C C31 BP9 . . . B 2 3.212 -10.021 -1.562 1 78.6 ? C31 BP9 601 A 1 HETATM 6 C C32 BP9 . . . B 2 7.104 -8.455 0.519 1 71.9 ? C32 BP9 601 A 1 HETATM 7 C C33 BP9 . . . B 2 5.402 -9.958 -0.338 1 77.86 ? C33 BP9 601 A 1 HETATM 8 S S35 BP9 . . . B 2 4.887 -9.973 -1.866 1 79.05 ? S35 BP9 601 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #