data_3VP6 # _model_server_result.job_id X4HGxBSkxRuOLngEXAa9MQ _model_server_result.datetime_utc '2024-11-26 05:43:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3vp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1003}' # _entry.id 3VP6 # _exptl.entry_id 3VP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.14 _cell.angle_gamma 90 _cell.entry_id 3VP6 _cell.length_a 86.006 _cell.length_b 64.084 _cell.length_c 102.646 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3VP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 315 A HIS 404 1_555 A N LLP 316 A LLP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 A C LLP 316 A LLP 405 1_555 A N MET 317 A MET 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 B C HIS 315 B HIS 404 1_555 B N LLP 316 B LLP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 B C LLP 316 B LLP 405 1_555 B N MET 317 B MET 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3VP6 _atom_sites.fract_transf_matrix[1][1] 0.011627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003809 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HLD A 1 1001 1001 HLD HLD . D 2 HLD B 1 1001 1001 HLD HLD . E 3 GOL B 1 1002 1002 GOL GOL . F 3 GOL B 1 1003 1003 GOL GOL . G 4 HOH A 1 1101 2 HOH HOH . G 4 HOH A 2 1102 5 HOH HOH . G 4 HOH A 3 1103 7 HOH HOH . G 4 HOH A 4 1104 8 HOH HOH . G 4 HOH A 5 1105 11 HOH HOH . G 4 HOH A 6 1106 12 HOH HOH . G 4 HOH A 7 1107 14 HOH HOH . G 4 HOH A 8 1108 15 HOH HOH . G 4 HOH A 9 1109 19 HOH HOH . G 4 HOH A 10 1110 20 HOH HOH . G 4 HOH A 11 1111 26 HOH HOH . G 4 HOH A 12 1112 30 HOH HOH . G 4 HOH A 13 1113 33 HOH HOH . G 4 HOH A 14 1114 40 HOH HOH . G 4 HOH A 15 1115 41 HOH HOH . G 4 HOH A 16 1116 42 HOH HOH . G 4 HOH A 17 1117 44 HOH HOH . G 4 HOH A 18 1118 49 HOH HOH . G 4 HOH A 19 1119 51 HOH HOH . G 4 HOH A 20 1120 52 HOH HOH . G 4 HOH A 21 1121 53 HOH HOH . G 4 HOH A 22 1122 54 HOH HOH . G 4 HOH A 23 1123 55 HOH HOH . G 4 HOH A 24 1124 57 HOH HOH . G 4 HOH A 25 1125 59 HOH HOH . G 4 HOH A 26 1126 60 HOH HOH . G 4 HOH A 27 1127 62 HOH HOH . G 4 HOH A 28 1128 70 HOH HOH . G 4 HOH A 29 1129 74 HOH HOH . G 4 HOH A 30 1130 78 HOH HOH . G 4 HOH A 31 1131 79 HOH HOH . G 4 HOH A 32 1132 80 HOH HOH . G 4 HOH A 33 1133 81 HOH HOH . G 4 HOH A 34 1134 82 HOH HOH . G 4 HOH A 35 1135 83 HOH HOH . G 4 HOH A 36 1136 85 HOH HOH . G 4 HOH A 37 1137 86 HOH HOH . G 4 HOH A 38 1138 89 HOH HOH . G 4 HOH A 39 1139 92 HOH HOH . G 4 HOH A 40 1140 93 HOH HOH . G 4 HOH A 41 1141 94 HOH HOH . G 4 HOH A 42 1142 95 HOH HOH . G 4 HOH A 43 1143 98 HOH HOH . G 4 HOH A 44 1144 99 HOH HOH . G 4 HOH A 45 1145 101 HOH HOH . G 4 HOH A 46 1146 103 HOH HOH . G 4 HOH A 47 1147 106 HOH HOH . G 4 HOH A 48 1148 110 HOH HOH . G 4 HOH A 49 1149 113 HOH HOH . G 4 HOH A 50 1150 115 HOH HOH . G 4 HOH A 51 1151 118 HOH HOH . G 4 HOH A 52 1152 119 HOH HOH . G 4 HOH A 53 1153 120 HOH HOH . G 4 HOH A 54 1154 128 HOH HOH . G 4 HOH A 55 1155 129 HOH HOH . G 4 HOH A 56 1156 130 HOH HOH . G 4 HOH A 57 1157 131 HOH HOH . G 4 HOH A 58 1158 134 HOH HOH . G 4 HOH A 59 1159 135 HOH HOH . G 4 HOH A 60 1160 137 HOH HOH . G 4 HOH A 61 1161 141 HOH HOH . G 4 HOH A 62 1162 142 HOH HOH . G 4 HOH A 63 1163 149 HOH HOH . G 4 HOH A 64 1164 151 HOH HOH . G 4 HOH A 65 1165 152 HOH HOH . G 4 HOH A 66 1166 154 HOH HOH . G 4 HOH A 67 1167 155 HOH HOH . G 4 HOH A 68 1168 156 HOH HOH . G 4 HOH A 69 1169 158 HOH HOH . G 4 HOH A 70 1170 159 HOH HOH . G 4 HOH A 71 1171 160 HOH HOH . G 4 HOH A 72 1172 162 HOH HOH . G 4 HOH A 73 1173 167 HOH HOH . G 4 HOH A 74 1174 169 HOH HOH . G 4 HOH A 75 1175 170 HOH HOH . G 4 HOH A 76 1176 171 HOH HOH . G 4 HOH A 77 1177 173 HOH HOH . G 4 HOH A 78 1178 175 HOH HOH . G 4 HOH A 79 1179 182 HOH HOH . G 4 HOH A 80 1180 183 HOH HOH . G 4 HOH A 81 1181 184 HOH HOH . G 4 HOH A 82 1182 185 HOH HOH . G 4 HOH A 83 1183 186 HOH HOH . G 4 HOH A 84 1184 187 HOH HOH . G 4 HOH A 85 1185 188 HOH HOH . G 4 HOH A 86 1186 193 HOH HOH . G 4 HOH A 87 1187 197 HOH HOH . G 4 HOH A 88 1188 198 HOH HOH . G 4 HOH A 89 1189 201 HOH HOH . G 4 HOH A 90 1190 202 HOH HOH . G 4 HOH A 91 1191 203 HOH HOH . G 4 HOH A 92 1192 204 HOH HOH . G 4 HOH A 93 1193 205 HOH HOH . G 4 HOH A 94 1194 206 HOH HOH . G 4 HOH A 95 1195 207 HOH HOH . G 4 HOH A 96 1196 209 HOH HOH . G 4 HOH A 97 1197 229 HOH HOH . G 4 HOH A 98 1198 235 HOH HOH . G 4 HOH A 99 1199 236 HOH HOH . G 4 HOH A 100 1200 237 HOH HOH . G 4 HOH A 101 1201 238 HOH HOH . G 4 HOH A 102 1202 239 HOH HOH . G 4 HOH A 103 1203 240 HOH HOH . G 4 HOH A 104 1204 241 HOH HOH . G 4 HOH A 105 1205 242 HOH HOH . G 4 HOH A 106 1206 243 HOH HOH . G 4 HOH A 107 1207 244 HOH HOH . G 4 HOH A 108 1208 245 HOH HOH . G 4 HOH A 109 1209 246 HOH HOH . G 4 HOH A 110 1210 247 HOH HOH . G 4 HOH A 111 1211 248 HOH HOH . G 4 HOH A 112 1212 249 HOH HOH . G 4 HOH A 113 1213 250 HOH HOH . G 4 HOH A 114 1214 251 HOH HOH . G 4 HOH A 115 1215 252 HOH HOH . G 4 HOH A 116 1216 253 HOH HOH . G 4 HOH A 117 1217 254 HOH HOH . G 4 HOH A 118 1218 255 HOH HOH . G 4 HOH A 119 1219 257 HOH HOH . G 4 HOH A 120 1220 258 HOH HOH . G 4 HOH A 121 1221 259 HOH HOH . G 4 HOH A 122 1222 260 HOH HOH . G 4 HOH A 123 1223 261 HOH HOH . G 4 HOH A 124 1224 262 HOH HOH . G 4 HOH A 125 1225 263 HOH HOH . G 4 HOH A 126 1226 264 HOH HOH . G 4 HOH A 127 1227 265 HOH HOH . G 4 HOH A 128 1228 268 HOH HOH . G 4 HOH A 129 1229 269 HOH HOH . G 4 HOH A 130 1230 270 HOH HOH . G 4 HOH A 131 1231 272 HOH HOH . G 4 HOH A 132 1232 273 HOH HOH . H 4 HOH B 1 1101 1 HOH HOH . H 4 HOH B 2 1102 3 HOH HOH . H 4 HOH B 3 1103 4 HOH HOH . H 4 HOH B 4 1104 6 HOH HOH . H 4 HOH B 5 1105 9 HOH HOH . H 4 HOH B 6 1106 10 HOH HOH . H 4 HOH B 7 1107 13 HOH HOH . H 4 HOH B 8 1108 16 HOH HOH . H 4 HOH B 9 1109 17 HOH HOH . H 4 HOH B 10 1110 18 HOH HOH . H 4 HOH B 11 1111 21 HOH HOH . H 4 HOH B 12 1112 22 HOH HOH . H 4 HOH B 13 1113 23 HOH HOH . H 4 HOH B 14 1114 24 HOH HOH . H 4 HOH B 15 1115 25 HOH HOH . H 4 HOH B 16 1116 27 HOH HOH . H 4 HOH B 17 1117 28 HOH HOH . H 4 HOH B 18 1118 29 HOH HOH . H 4 HOH B 19 1119 31 HOH HOH . H 4 HOH B 20 1120 32 HOH HOH . H 4 HOH B 21 1121 34 HOH HOH . H 4 HOH B 22 1122 35 HOH HOH . H 4 HOH B 23 1123 36 HOH HOH . H 4 HOH B 24 1124 37 HOH HOH . H 4 HOH B 25 1125 38 HOH HOH . H 4 HOH B 26 1126 39 HOH HOH . H 4 HOH B 27 1127 43 HOH HOH . H 4 HOH B 28 1128 45 HOH HOH . H 4 HOH B 29 1129 46 HOH HOH . H 4 HOH B 30 1130 47 HOH HOH . H 4 HOH B 31 1131 48 HOH HOH . H 4 HOH B 32 1132 50 HOH HOH . H 4 HOH B 33 1133 56 HOH HOH . H 4 HOH B 34 1134 58 HOH HOH . H 4 HOH B 35 1135 61 HOH HOH . H 4 HOH B 36 1136 63 HOH HOH . H 4 HOH B 37 1137 64 HOH HOH . H 4 HOH B 38 1138 65 HOH HOH . H 4 HOH B 39 1139 66 HOH HOH . H 4 HOH B 40 1140 67 HOH HOH . H 4 HOH B 41 1141 68 HOH HOH . H 4 HOH B 42 1142 69 HOH HOH . H 4 HOH B 43 1143 71 HOH HOH . H 4 HOH B 44 1144 72 HOH HOH . H 4 HOH B 45 1145 73 HOH HOH . H 4 HOH B 46 1146 75 HOH HOH . H 4 HOH B 47 1147 76 HOH HOH . H 4 HOH B 48 1148 77 HOH HOH . H 4 HOH B 49 1149 87 HOH HOH . H 4 HOH B 50 1150 88 HOH HOH . H 4 HOH B 51 1151 90 HOH HOH . H 4 HOH B 52 1152 91 HOH HOH . H 4 HOH B 53 1153 96 HOH HOH . H 4 HOH B 54 1154 97 HOH HOH . H 4 HOH B 55 1155 100 HOH HOH . H 4 HOH B 56 1156 104 HOH HOH . H 4 HOH B 57 1157 105 HOH HOH . H 4 HOH B 58 1158 107 HOH HOH . H 4 HOH B 59 1159 108 HOH HOH . H 4 HOH B 60 1160 109 HOH HOH . H 4 HOH B 61 1161 111 HOH HOH . H 4 HOH B 62 1162 112 HOH HOH . H 4 HOH B 63 1163 114 HOH HOH . H 4 HOH B 64 1164 116 HOH HOH . H 4 HOH B 65 1165 117 HOH HOH . H 4 HOH B 66 1166 121 HOH HOH . H 4 HOH B 67 1167 122 HOH HOH . H 4 HOH B 68 1168 123 HOH HOH . H 4 HOH B 69 1169 124 HOH HOH . H 4 HOH B 70 1170 125 HOH HOH . H 4 HOH B 71 1171 126 HOH HOH . H 4 HOH B 72 1172 127 HOH HOH . H 4 HOH B 73 1173 132 HOH HOH . H 4 HOH B 74 1174 133 HOH HOH . H 4 HOH B 75 1175 136 HOH HOH . H 4 HOH B 76 1176 138 HOH HOH . H 4 HOH B 77 1177 139 HOH HOH . H 4 HOH B 78 1178 140 HOH HOH . H 4 HOH B 79 1179 143 HOH HOH . H 4 HOH B 80 1180 144 HOH HOH . H 4 HOH B 81 1181 145 HOH HOH . H 4 HOH B 82 1182 146 HOH HOH . H 4 HOH B 83 1183 147 HOH HOH . H 4 HOH B 84 1184 148 HOH HOH . H 4 HOH B 85 1185 150 HOH HOH . H 4 HOH B 86 1186 153 HOH HOH . H 4 HOH B 87 1187 161 HOH HOH . H 4 HOH B 88 1188 163 HOH HOH . H 4 HOH B 89 1189 164 HOH HOH . H 4 HOH B 90 1190 165 HOH HOH . H 4 HOH B 91 1191 166 HOH HOH . H 4 HOH B 92 1192 168 HOH HOH . H 4 HOH B 93 1193 172 HOH HOH . H 4 HOH B 94 1194 174 HOH HOH . H 4 HOH B 95 1195 176 HOH HOH . H 4 HOH B 96 1196 177 HOH HOH . H 4 HOH B 97 1197 178 HOH HOH . H 4 HOH B 98 1198 180 HOH HOH . H 4 HOH B 99 1199 189 HOH HOH . H 4 HOH B 100 1200 190 HOH HOH . H 4 HOH B 101 1201 192 HOH HOH . H 4 HOH B 102 1202 195 HOH HOH . H 4 HOH B 103 1203 196 HOH HOH . H 4 HOH B 104 1204 199 HOH HOH . H 4 HOH B 105 1205 200 HOH HOH . H 4 HOH B 106 1206 210 HOH HOH . H 4 HOH B 107 1207 211 HOH HOH . H 4 HOH B 108 1208 212 HOH HOH . H 4 HOH B 109 1209 213 HOH HOH . H 4 HOH B 110 1210 214 HOH HOH . H 4 HOH B 111 1211 215 HOH HOH . H 4 HOH B 112 1212 216 HOH HOH . H 4 HOH B 113 1213 217 HOH HOH . H 4 HOH B 114 1214 218 HOH HOH . H 4 HOH B 115 1215 219 HOH HOH . H 4 HOH B 116 1216 220 HOH HOH . H 4 HOH B 117 1217 221 HOH HOH . H 4 HOH B 118 1218 222 HOH HOH . H 4 HOH B 119 1219 223 HOH HOH . H 4 HOH B 120 1220 224 HOH HOH . H 4 HOH B 121 1221 225 HOH HOH . H 4 HOH B 122 1222 226 HOH HOH . H 4 HOH B 123 1223 227 HOH HOH . H 4 HOH B 124 1224 228 HOH HOH . H 4 HOH B 125 1225 231 HOH HOH . H 4 HOH B 126 1226 232 HOH HOH . H 4 HOH B 127 1227 233 HOH HOH . H 4 HOH B 128 1228 234 HOH HOH . H 4 HOH B 129 1229 266 HOH HOH . H 4 HOH B 130 1230 267 HOH HOH . H 4 HOH B 131 1231 271 HOH HOH . H 4 HOH B 132 1232 274 HOH HOH . H 4 HOH B 133 1233 275 HOH HOH . H 4 HOH B 134 1234 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 3.244 -18.679 -1.658 1 42.17 ? C1 GOL 1003 B 1 HETATM 2 O O1 GOL . . . F 3 3.122 -18.684 -3.08 1 43.79 ? O1 GOL 1003 B 1 HETATM 3 C C2 GOL . . . F 3 4.05 -17.489 -1.191 1 38.13 ? C2 GOL 1003 B 1 HETATM 4 O O2 GOL . . . F 3 4.198 -17.512 0.229 1 38.27 ? O2 GOL 1003 B 1 HETATM 5 C C3 GOL . . . F 3 5.405 -17.481 -1.858 1 35.65 ? C3 GOL 1003 B 1 HETATM 6 O O3 GOL . . . F 3 6.432 -17.823 -0.952 1 33.85 ? O3 GOL 1003 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #