data_3VP9
#
_model_server_result.job_id            kpL8dDhDqwA6ccWohyCiCA 
_model_server_result.datetime_utc      '2024-12-21 14:23:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3vp9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":101}' 
#
_entry.id    3VP9 
#
_exptl.entry_id    3VP9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.35 
_cell.angle_gamma         90 
_cell.entry_id            3VP9 
_cell.length_a            56.102 
_cell.length_b            41.461 
_cell.length_c            103.889 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3VP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 56.102 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 70 n n 
C1 O1 DIO sing 71 n n 
C1 H11 DIO sing 72 n n 
C1 H12 DIO sing 73 n n 
C2 C2' DIO sing 74 n n 
C2 O1 DIO sing 75 n n 
C2 H21 DIO sing 76 n n 
C2 H22 DIO sing 77 n n 
C1' O1' DIO sing 78 n n 
C1' "H1'1" DIO sing 79 n n 
C1' "H1'2" DIO sing 80 n n 
C2' O1' DIO sing 81 n n 
C2' "H2'1" DIO sing 82 n n 
C2' "H2'2" DIO sing 83 n n 
#
_atom_sites.entry_id                     3VP9 
_atom_sites.fract_transf_matrix[1][1]    0.017825 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001669 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024119 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009668 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DIO A 1 101 1 DIO DIO . 
D 2 DIO B 1 101 2 DIO DIO . 
E 2 DIO B 1 102 3 DIO DIO . 
F 2 DIO B 1 103 4 DIO DIO . 
G 3 HOH A 1 201 2 HOH HOH . 
G 3 HOH A 2 202 4 HOH HOH . 
G 3 HOH A 3 203 5 HOH HOH . 
G 3 HOH A 4 204 6 HOH HOH . 
G 3 HOH A 5 205 7 HOH HOH . 
G 3 HOH A 6 206 13 HOH HOH . 
G 3 HOH A 7 207 17 HOH HOH . 
G 3 HOH A 8 208 18 HOH HOH . 
G 3 HOH A 9 209 19 HOH HOH . 
G 3 HOH A 10 210 25 HOH HOH . 
G 3 HOH A 11 211 26 HOH HOH . 
G 3 HOH A 12 212 27 HOH HOH . 
G 3 HOH A 13 213 29 HOH HOH . 
G 3 HOH A 14 214 31 HOH HOH . 
G 3 HOH A 15 215 32 HOH HOH . 
G 3 HOH A 16 216 34 HOH HOH . 
G 3 HOH A 17 217 35 HOH HOH . 
G 3 HOH A 18 218 36 HOH HOH . 
G 3 HOH A 19 219 39 HOH HOH . 
G 3 HOH A 20 220 42 HOH HOH . 
G 3 HOH A 21 221 44 HOH HOH . 
G 3 HOH A 22 222 48 HOH HOH . 
G 3 HOH A 23 223 50 HOH HOH . 
G 3 HOH A 24 224 53 HOH HOH . 
G 3 HOH A 25 225 54 HOH HOH . 
G 3 HOH A 26 226 60 HOH HOH . 
G 3 HOH A 27 227 61 HOH HOH . 
G 3 HOH A 28 228 62 HOH HOH . 
G 3 HOH A 29 229 64 HOH HOH . 
G 3 HOH A 30 230 66 HOH HOH . 
G 3 HOH A 31 231 69 HOH HOH . 
G 3 HOH A 32 232 72 HOH HOH . 
G 3 HOH A 33 233 76 HOH HOH . 
G 3 HOH A 34 234 77 HOH HOH . 
G 3 HOH A 35 235 78 HOH HOH . 
G 3 HOH A 36 236 82 HOH HOH . 
G 3 HOH A 37 237 84 HOH HOH . 
G 3 HOH A 38 238 89 HOH HOH . 
G 3 HOH A 39 239 91 HOH HOH . 
G 3 HOH A 40 240 92 HOH HOH . 
G 3 HOH A 41 241 93 HOH HOH . 
G 3 HOH A 42 242 95 HOH HOH . 
G 3 HOH A 43 243 96 HOH HOH . 
G 3 HOH A 44 244 97 HOH HOH . 
G 3 HOH A 45 245 101 HOH HOH . 
G 3 HOH A 46 246 102 HOH HOH . 
G 3 HOH A 47 247 104 HOH HOH . 
G 3 HOH A 48 248 114 HOH HOH . 
G 3 HOH A 49 249 115 HOH HOH . 
G 3 HOH A 50 250 118 HOH HOH . 
G 3 HOH A 51 251 120 HOH HOH . 
G 3 HOH A 52 252 121 HOH HOH . 
G 3 HOH A 53 253 122 HOH HOH . 
G 3 HOH A 54 254 123 HOH HOH . 
G 3 HOH A 55 255 129 HOH HOH . 
G 3 HOH A 56 256 130 HOH HOH . 
G 3 HOH A 57 257 131 HOH HOH . 
G 3 HOH A 58 258 132 HOH HOH . 
G 3 HOH A 59 259 133 HOH HOH . 
G 3 HOH A 60 260 136 HOH HOH . 
G 3 HOH A 61 261 139 HOH HOH . 
G 3 HOH A 62 262 143 HOH HOH . 
G 3 HOH A 63 263 144 HOH HOH . 
G 3 HOH A 64 264 146 HOH HOH . 
G 3 HOH A 65 265 149 HOH HOH . 
G 3 HOH A 66 266 150 HOH HOH . 
G 3 HOH A 67 267 151 HOH HOH . 
G 3 HOH A 68 268 154 HOH HOH . 
G 3 HOH A 69 269 155 HOH HOH . 
G 3 HOH A 70 270 156 HOH HOH . 
G 3 HOH A 71 271 157 HOH HOH . 
G 3 HOH A 72 272 158 HOH HOH . 
G 3 HOH A 73 273 159 HOH HOH . 
G 3 HOH A 74 274 160 HOH HOH . 
G 3 HOH A 75 275 161 HOH HOH . 
G 3 HOH A 76 276 164 HOH HOH . 
G 3 HOH A 77 277 169 HOH HOH . 
H 3 HOH B 1 201 1 HOH HOH . 
H 3 HOH B 2 202 3 HOH HOH . 
H 3 HOH B 3 203 8 HOH HOH . 
H 3 HOH B 4 204 9 HOH HOH . 
H 3 HOH B 5 205 10 HOH HOH . 
H 3 HOH B 6 206 11 HOH HOH . 
H 3 HOH B 7 207 12 HOH HOH . 
H 3 HOH B 8 208 14 HOH HOH . 
H 3 HOH B 9 209 15 HOH HOH . 
H 3 HOH B 10 210 16 HOH HOH . 
H 3 HOH B 11 211 20 HOH HOH . 
H 3 HOH B 12 212 21 HOH HOH . 
H 3 HOH B 13 213 22 HOH HOH . 
H 3 HOH B 14 214 23 HOH HOH . 
H 3 HOH B 15 215 24 HOH HOH . 
H 3 HOH B 16 216 28 HOH HOH . 
H 3 HOH B 17 217 30 HOH HOH . 
H 3 HOH B 18 218 33 HOH HOH . 
H 3 HOH B 19 219 37 HOH HOH . 
H 3 HOH B 20 220 38 HOH HOH . 
H 3 HOH B 21 221 40 HOH HOH . 
H 3 HOH B 22 222 41 HOH HOH . 
H 3 HOH B 23 223 43 HOH HOH . 
H 3 HOH B 24 224 45 HOH HOH . 
H 3 HOH B 25 225 46 HOH HOH . 
H 3 HOH B 26 226 47 HOH HOH . 
H 3 HOH B 27 227 49 HOH HOH . 
H 3 HOH B 28 228 51 HOH HOH . 
H 3 HOH B 29 229 52 HOH HOH . 
H 3 HOH B 30 230 55 HOH HOH . 
H 3 HOH B 31 231 56 HOH HOH . 
H 3 HOH B 32 232 57 HOH HOH . 
H 3 HOH B 33 233 58 HOH HOH . 
H 3 HOH B 34 234 59 HOH HOH . 
H 3 HOH B 35 235 63 HOH HOH . 
H 3 HOH B 36 236 65 HOH HOH . 
H 3 HOH B 37 237 67 HOH HOH . 
H 3 HOH B 38 238 68 HOH HOH . 
H 3 HOH B 39 239 70 HOH HOH . 
H 3 HOH B 40 240 71 HOH HOH . 
H 3 HOH B 41 241 73 HOH HOH . 
H 3 HOH B 42 242 74 HOH HOH . 
H 3 HOH B 43 243 75 HOH HOH . 
H 3 HOH B 44 244 79 HOH HOH . 
H 3 HOH B 45 245 80 HOH HOH . 
H 3 HOH B 46 246 81 HOH HOH . 
H 3 HOH B 47 247 83 HOH HOH . 
H 3 HOH B 48 248 85 HOH HOH . 
H 3 HOH B 49 249 86 HOH HOH . 
H 3 HOH B 50 250 87 HOH HOH . 
H 3 HOH B 51 251 88 HOH HOH . 
H 3 HOH B 52 252 90 HOH HOH . 
H 3 HOH B 53 253 94 HOH HOH . 
H 3 HOH B 54 254 98 HOH HOH . 
H 3 HOH B 55 255 99 HOH HOH . 
H 3 HOH B 56 256 100 HOH HOH . 
H 3 HOH B 57 257 103 HOH HOH . 
H 3 HOH B 58 258 105 HOH HOH . 
H 3 HOH B 59 259 106 HOH HOH . 
H 3 HOH B 60 260 107 HOH HOH . 
H 3 HOH B 61 261 108 HOH HOH . 
H 3 HOH B 62 262 109 HOH HOH . 
H 3 HOH B 63 263 110 HOH HOH . 
H 3 HOH B 64 264 111 HOH HOH . 
H 3 HOH B 65 265 112 HOH HOH . 
H 3 HOH B 66 266 113 HOH HOH . 
H 3 HOH B 67 267 116 HOH HOH . 
H 3 HOH B 68 268 117 HOH HOH . 
H 3 HOH B 69 269 119 HOH HOH . 
H 3 HOH B 70 270 124 HOH HOH . 
H 3 HOH B 71 271 125 HOH HOH . 
H 3 HOH B 72 272 126 HOH HOH . 
H 3 HOH B 73 273 127 HOH HOH . 
H 3 HOH B 74 274 128 HOH HOH . 
H 3 HOH B 75 275 134 HOH HOH . 
H 3 HOH B 76 276 135 HOH HOH . 
H 3 HOH B 77 277 137 HOH HOH . 
H 3 HOH B 78 278 138 HOH HOH . 
H 3 HOH B 79 279 140 HOH HOH . 
H 3 HOH B 80 280 141 HOH HOH . 
H 3 HOH B 81 281 142 HOH HOH . 
H 3 HOH B 82 282 145 HOH HOH . 
H 3 HOH B 83 283 147 HOH HOH . 
H 3 HOH B 84 284 148 HOH HOH . 
H 3 HOH B 85 285 152 HOH HOH . 
H 3 HOH B 86 286 153 HOH HOH . 
H 3 HOH B 87 287 162 HOH HOH . 
H 3 HOH B 88 288 163 HOH HOH . 
H 3 HOH B 89 289 165 HOH HOH . 
H 3 HOH B 90 290 166 HOH HOH . 
H 3 HOH B 91 291 167 HOH HOH . 
H 3 HOH B 92 292 168 HOH HOH . 
H 3 HOH B 93 293 170 HOH HOH . 
H 3 HOH B 94 294 171 HOH HOH . 
H 3 HOH B 95 295 172 HOH HOH . 
H 3 HOH B 96 296 173 HOH HOH . 
H 3 HOH B 97 297 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . D 2 13.053 26.011 6.678 1 26.04 ? C1 DIO 101 B 1 
HETATM 2 C C2 DIO . . . D 2 13.932 27.958 5.852 1 26.14 ? C2 DIO 101 B 1 
HETATM 3 C C1' DIO . . . D 2 14.382 25.334 6.528 1 28.96 ? C1' DIO 101 B 1 
HETATM 4 C C2' DIO . . . D 2 15.287 27.334 5.837 1 22.04 ? C2' DIO 101 B 1 
HETATM 5 O O1 DIO . . . D 2 13.136 27.376 6.824 1 29.24 ? O1 DIO 101 B 1 
HETATM 6 O O1' DIO . . . D 2 15.223 25.97 5.624 1 25.21 ? O1' DIO 101 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#